MD03G1144400.v1.1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
15575123 .. 15577348
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1144400.v1.1.491

Sequence Viewer

Length: 1155 bp
ATGGCAGCCTCCACTGTCCTATTCACAATTATTCTGCTCTTCCTCGGTCTTTCAGATTCAAGTGTCCAAGTCCAGAGCCTGAGCTTCGGAATCAACTATGGACAAATAGCCAACAACCTCCCATCTCCGTCGCGAGTGGCCGTCCTCCTCCAGTCCCTCAACGTCAGCCTAGTCAAACTTTACGACGCAGATCCGAACGTCCTCCAAGCCTTCGCGAACTCCGAGGTTGATTTCATCATCGGCCTCGGCAACGAGTACTTGCAGAGCATGTCCACCGACCCTCTCAAAGCCCAATCCTGGATTCAGCAGCACGTGCAGCCCCATCTCCCCCAGACCAAAATCACGTGCATCAACGTCGGGAACGAAGTCCTCGGCGGCACCGACACCCAGCTGTGGTCGTACCTCCTCCCGGCAATGCAATCAGTCTACCGTGCCCTCGTCAACCTCGGCCTCTCCAAACAAGTAGCTGTCACGACCGCGCACTCGCTTACTATTTTAGGAAACTCCTACCCGCCGTCGTCGGGGAGTTTCCGACAAGATCTCGCTCAATATATCCAGCCGATCCTCAGCTTCCACTCGCAAGTTAATTCGCCTTTTTTGATAAATGCTTATCCGTACTTTGCTTACAAGGACAATCCAGGTGAAGTTTCGATAGAGTACGTGCTGTTCCAGCCTAATTCTGGTATGGTCGATTCAGTCACAAATCTCCACTACGACAACATGCTGGATGCCCAGATTGATGCCGTTTATTCCGCCATCAAGGTGATGGGCCATTCGGACATCGAGGTCCGAATATCCGAGACCGGCTGGCCTTCCAAGGGGGATGCCAACGAGGCCGGCGCCACGCCGGAGAATGCTGGTATTTACAATGGGAATCTGATGAGGAAAATTGAAGAGAAGAAAGGGACGCCGGCGAAGACTCAAGTTCCGATTGACATTTACGTTTTTGCACTGTTTAATGAGGATTTGAAGCCTGGTCCGGCATCGGAGAGGAACTATGGACTATATTATCCTAATGGTACTCAGGTTTATGATATTGGATCCCAGGGTTATCTTCCTCAGCTAACTTTTTCTGCAGACTCTAATATAAATGCCATATCCATCTTCAATTTTCTGAGCCTTCTCATTGTGTACATATTATTATGTGCTTATTAG

Protein Analysis

385

Amino Acids

42.09

Weight (kDa)

4.75

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 30 - 346 2e-88 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 785
AccB1I GGYRCC 2 cut(s) 377, 839
AccI GTMKAC 1 cut(s) 426
AccII CGCG 3 cut(s) 133, 215, 479
AciI CCGC 4 cut(s) 375, 477, 512, 753
AclWI GGATC 4 cut(s) 185, 556, 1035, 1048
AcoI YGGCCR 1 cut(s) 138
AcvI CACGTG 2 cut(s) 313, 345
AcyI GRCGYC 2 cut(s) 840, 908
AfaI GTAC 6 cut(s) 257, 401, 617, 659, 1021, 1133
AfiI CCNNNNNNNGG 6 cut(s) 297, 393, 409, 521, 680, 818
AgsI TTSAA 4 cut(s) 60, 893, 970, 1108
AjnI CCWGG 4 cut(s) 296, 637, 973, 1044
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 5 cut(s) 84, 391, 467, 570, 1063
AluI AGCT 5 cut(s) 84, 391, 467, 570, 1063
Alw26I GTCTC 1 cut(s) 794
AlwI GGATC 4 cut(s) 185, 556, 1035, 1048
AlwNI CAGNNNCTG 1 cut(s) 79
AoxI GGCC 6 cut(s) 138, 241, 448, 769, 809, 834
ApeKI GCWGC 3 cut(s) 5, 307, 316
AspLEI GCGC 2 cut(s) 481, 842
AspS9I GGNCC 3 cut(s) 769, 787, 977
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 2 cut(s) 653, 775
AvaII GGWCC 2 cut(s) 787, 977
BaeGI GKGCMC 1 cut(s) 436
BaeI ACNNNNGTAYC 2 cut(s) 1011, 1044
BamHI GGATCC 1 cut(s) 1040
BanI GGYRCC 2 cut(s) 377, 839
BbrPI CACGTG 2 cut(s) 313, 345
BbsI GAAGAC 1 cut(s) 923
BbvCI CCTCAGC 2 cut(s) 566, 1059
BbvI GCAGC 3 cut(s) 17, 319, 328
BccI CCATC 5 cut(s) 130, 330, 760, 764, 1109
BceAI ACGGC 3 cut(s) 125, 499, 728
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BciT130I CCWGG 4 cut(s) 298, 639, 975, 1046
BcnI CCSGG 1 cut(s) 410
BcoDI GTCTC 1 cut(s) 794
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 1074
BfoI RGCGCY 1 cut(s) 843
BglI GCCNNNNNGGC 1 cut(s) 833
BglII AGATCT 1 cut(s) 538
BisI GCNGC 4 cut(s) 6, 308, 317, 376
BlsI GCNGC 4 cut(s) 7, 309, 318, 377
BmcAI AGTACT 1 cut(s) 257
Bme1390I CCNGG 5 cut(s) 298, 410, 639, 975, 1046
Bme18I GGWCC 2 cut(s) 787, 977
BmgT120I GGNCC 3 cut(s) 769, 787, 977
BmiI GGNNCC 3 cut(s) 379, 841, 1042
BmrFI CCNGG 5 cut(s) 298, 410, 639, 975, 1046
BmsI GCATC 5 cut(s) 357, 718, 730, 814, 992
BpiI GAAGAC 1 cut(s) 923
BpmI CTGGAG 1 cut(s) 134
Bpu10I CCTNAGC 3 cut(s) 80, 566, 1059
BpuEI CTTGAG 1 cut(s) 906
BpuMI CCSGG 1 cut(s) 410
BsaAI YACGTR 3 cut(s) 313, 345, 661
BsaHI GRCGYC 2 cut(s) 840, 908
BsaI GGTCTC 1 cut(s) 794
BsaJI CCNNGG 8 cut(s) 43, 222, 244, 370, 445, 816, 1044, 1045
Bsc4I CCNNNNNNNGG 6 cut(s) 297, 393, 409, 521, 680, 818
Bse118I RCCGGY 3 cut(s) 803, 836, 910
Bse1I ACTGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 420
BseBI CCWGG 4 cut(s) 298, 639, 975, 1046
BseDI CCNNGG 8 cut(s) 43, 222, 244, 370, 445, 816, 1044, 1045
BseGI GGATG 2 cut(s) 733, 829
BseLI CCNNNNNNNGG 6 cut(s) 297, 393, 409, 521, 680, 818
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 5 cut(s) 71, 580, 1037, 1073, 1106
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 2 cut(s) 137, 395
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 3 cut(s) 17, 319, 328
BseYI CCCAGC 1 cut(s) 387
BsgI GTGCAG 1 cut(s) 335
Bsh1236I CGCG 3 cut(s) 133, 215, 479
Bsh1285I CGRYCG 1 cut(s) 477
BshFI GGCC 6 cut(s) 140, 243, 450, 771, 811, 836
BshNI GGYRCC 2 cut(s) 377, 839
BsiEI CGRYCG 1 cut(s) 477
BsiSI CCGG 6 cut(s) 410, 804, 837, 848, 911, 980
BslFI GGGAC 2 cut(s) 139, 919
BslI CCNNNNNNNGG 6 cut(s) 297, 393, 409, 521, 680, 818
BsmAI GTCTC 1 cut(s) 794
BsmFI GGGAC 2 cut(s) 139, 919
BsmI GAATGC 1 cut(s) 859
BsnI GGCC 6 cut(s) 140, 243, 450, 771, 811, 836
Bso31I GGTCTC 1 cut(s) 794
Bsp1286I GDGCHC 1 cut(s) 436
Bsp1407I TGTACA 1 cut(s) 1131
Bsp143I GATC 4 cut(s) 190, 538, 561, 1040
Bsp68I TCGCGA 2 cut(s) 133, 215
BspACI CCGC 4 cut(s) 375, 477, 512, 753
BspANI GGCC 6 cut(s) 140, 243, 450, 771, 811, 836
BspCNI CTCAG 5 cut(s) 72, 579, 1036, 1072, 1107
BspFNI CGCG 3 cut(s) 133, 215, 479
BspLI GGNNCC 3 cut(s) 379, 841, 1042
BspMAI CTGCAG 1 cut(s) 1078
BspPI GGATC 4 cut(s) 185, 556, 1035, 1048
BspQI GCTCTTC 1 cut(s) 44
BspT107I GGYRCC 2 cut(s) 377, 839
BspTNI GGTCTC 1 cut(s) 794
BsrDI GCAATG 1 cut(s) 420
BsrFI RCCGGY 3 cut(s) 803, 836, 910
BsrGI TGTACA 1 cut(s) 1131
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 3 cut(s) 803, 836, 910
BssECI CCNNGG 8 cut(s) 43, 222, 244, 370, 445, 816, 1044, 1045
BssMI GATC 4 cut(s) 190, 538, 561, 1040
BssNI GRCGYC 2 cut(s) 840, 908
BssT1I CCWWGG 1 cut(s) 816
Bst2UI CCWGG 4 cut(s) 298, 639, 975, 1046
Bst4CI ACNGT 3 cut(s) 16, 431, 954
Bst6I CTCTTC 2 cut(s) 44, 888
BstACI GRCGYC 2 cut(s) 840, 908
BstAPI GCANNNNNTGC 1 cut(s) 313
BstAUI TGTACA 1 cut(s) 1131
BstBAI YACGTR 3 cut(s) 313, 345, 661
BstC8I GCNNGC 3 cut(s) 809, 838, 912
BstDEI CTNAG 5 cut(s) 80, 566, 1023, 1059, 1115
BstF5I GGATG 2 cut(s) 733, 829
BstFNI CGCG 3 cut(s) 133, 215, 479
BstH2I RGCGCY 1 cut(s) 843
BstHHI GCGC 2 cut(s) 481, 842
BstKTI GATC 4 cut(s) 193, 541, 564, 1043
BstMAI GTCTC 1 cut(s) 794
BstMBI GATC 4 cut(s) 190, 538, 561, 1040
BstMCI CGRYCG 1 cut(s) 477
BstMWI GCNNNNNNNGC 4 cut(s) 313, 316, 670, 833
BstNI CCWGG 4 cut(s) 298, 639, 975, 1046
BstNSI RCATGY 2 cut(s) 271, 724
BstSCI CCNGG 5 cut(s) 296, 408, 637, 973, 1044
BstSFI CTRYAG 1 cut(s) 1074
BstSLI GKGCMC 1 cut(s) 436
BstUI CGCG 3 cut(s) 133, 215, 479
BstV1I GCAGC 3 cut(s) 17, 319, 328
BstV2I GAAGAC 1 cut(s) 923
BstX2I RGATCY 3 cut(s) 190, 538, 1040
BstYI RGATCY 3 cut(s) 190, 538, 1040
BsuRI GGCC 6 cut(s) 140, 243, 450, 771, 811, 836
BtsCI GGATG 2 cut(s) 733, 829
BtsIMutI CAGTG 2 cut(s) 12, 950
BtuMI TCGCGA 2 cut(s) 133, 215
Cac8I GCNNGC 3 cut(s) 809, 838, 912
CaiI CAGNNNCTG 1 cut(s) 79
CfoI GCGC 2 cut(s) 481, 842
Cfr10I RCCGGY 3 cut(s) 803, 836, 910
Cfr13I GGNCC 3 cut(s) 769, 787, 977
CseI GACGC 2 cut(s) 194, 916
Csp6I GTAC 6 cut(s) 256, 400, 616, 658, 1020, 1132
CviAII CATG 2 cut(s) 268, 721
CviQI GTAC 6 cut(s) 256, 400, 616, 658, 1020, 1132
DdeI CTNAG 5 cut(s) 80, 566, 1023, 1059, 1115
DinI GGCGCC 1 cut(s) 841
DpnI GATC 4 cut(s) 192, 540, 563, 1042
DpnII GATC 4 cut(s) 190, 538, 561, 1040
DrdI GACNNNNNNGTC 1 cut(s) 785
DseDI GACNNNNNNGTC 1 cut(s) 785
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 2 cut(s) 44, 888
EarI CTCTTC 2 cut(s) 44, 888
EciI GGCGGA 1 cut(s) 742
Eco130I CCWWGG 1 cut(s) 816
Eco31I GGTCTC 1 cut(s) 794
Eco47I GGWCC 2 cut(s) 787, 977
Eco72I CACGTG 2 cut(s) 313, 345
EcoRII CCWGG 4 cut(s) 296, 637, 973, 1044
EcoT14I CCWWGG 1 cut(s) 816
EgeI GGCGCC 1 cut(s) 841
EheI GGCGCC 1 cut(s) 841
ErhI CCWWGG 1 cut(s) 816
FaeI CATG 2 cut(s) 271, 724
FaqI GGGAC 2 cut(s) 139, 919
FatI CATG 2 cut(s) 267, 720
FauI CCCGC 1 cut(s) 519
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 4 cut(s) 6, 308, 317, 376
FokI GGATG 2 cut(s) 740, 836
Fsp4HI GCNGC 4 cut(s) 6, 308, 317, 376
FspBI CTAG 1 cut(s) 170
GlaI GCGC 2 cut(s) 480, 841
GluI GCNGC 4 cut(s) 6, 308, 317, 376
GsaI CCCAGC 1 cut(s) 391
GsuI CTGGAG 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 843
HaeIII GGCC 6 cut(s) 140, 243, 450, 771, 811, 836
HapII CCGG 6 cut(s) 410, 804, 837, 848, 911, 980
HgaI GACGC 2 cut(s) 194, 916
HhaI GCGC 2 cut(s) 481, 842
Hin1I GRCGYC 2 cut(s) 840, 908
Hin1II CATG 2 cut(s) 271, 724
Hin6I GCGC 2 cut(s) 479, 840
HinP1I GCGC 2 cut(s) 479, 840
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HinfI GANTC 7 cut(s) 56, 90, 301, 692, 874, 919, 1079
HpaII CCGG 6 cut(s) 410, 804, 837, 848, 911, 980
HphI GGTGA 2 cut(s) 653, 775
Hpy166II GTNNAC 4 cut(s) 273, 427, 442, 1132
Hpy188III TCNNGA 5 cut(s) 73, 132, 214, 358, 472
Hpy8I GTNNAC 4 cut(s) 273, 427, 442, 1132
Hpy99I CGWCG 5 cut(s) 133, 188, 359, 520, 523
HpyAV CCTTC 3 cut(s) 220, 822, 1130
HpyCH4III ACNGT 3 cut(s) 16, 431, 954
HpyCH4IV ACGT 7 cut(s) 162, 198, 312, 344, 354, 660, 942
HpyCH4V TGCA 6 cut(s) 262, 316, 348, 418, 950, 1076
HpyF10VI GCNNNNNNNGC 4 cut(s) 313, 316, 670, 833
HpyF3I CTNAG 5 cut(s) 80, 566, 1023, 1059, 1115
HpySE526I ACGT 7 cut(s) 162, 198, 312, 344, 354, 660, 942
Hsp92I GRCGYC 2 cut(s) 840, 908
Hsp92II CATG 2 cut(s) 271, 724
HspAI GCGC 2 cut(s) 479, 840
KasI GGCGCC 1 cut(s) 839
KroI GCCGGC 2 cut(s) 836, 910
KroNI GCCGGC 2 cut(s) 838, 912
Kzo9I GATC 4 cut(s) 190, 538, 561, 1040
LguI GCTCTTC 1 cut(s) 44
Lsp1109I GCAGC 3 cut(s) 17, 319, 328
LweI GCATC 5 cut(s) 357, 718, 730, 814, 992
MaeI CTAG 1 cut(s) 170
MaeII ACGT 7 cut(s) 162, 198, 312, 344, 354, 660, 942
MaeIII GTNAC 2 cut(s) 469, 697
MalI GATC 4 cut(s) 192, 540, 563, 1042
MboI GATC 4 cut(s) 190, 538, 561, 1040
MboII GAAGA 6 cut(s) 31, 905, 910, 928, 1046, 1096
MflI RGATCY 3 cut(s) 190, 538, 1040
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 5 cut(s) 27, 586, 676, 888, 1108
Mly113I GGCGCC 1 cut(s) 840
MlyI GAGTC 2 cut(s) 913, 1073
MmeI TCCRAC 1 cut(s) 556
MreI CGCCGGCG 1 cut(s) 910
MroNI GCCGGC 2 cut(s) 836, 910
MseI TTAA 2 cut(s) 585, 957
MslI CAYNNNNRTG 1 cut(s) 761
MspA1I CMGCKG 1 cut(s) 391
MspI CCGG 6 cut(s) 410, 804, 837, 848, 911, 980
MspR9I CCNGG 5 cut(s) 298, 410, 639, 975, 1046
Mva1269I GAATGC 1 cut(s) 859
MvaI CCWGG 4 cut(s) 298, 639, 975, 1046
MvnI CGCG 3 cut(s) 133, 215, 479
MwoI GCNNNNNNNGC 4 cut(s) 313, 316, 670, 833
NaeI GCCGGC 2 cut(s) 838, 912
NarI GGCGCC 1 cut(s) 840
NciI CCSGG 1 cut(s) 410
NdeII GATC 4 cut(s) 190, 538, 561, 1040
NgoMIV GCCGGC 2 cut(s) 836, 910
NlaIII CATG 2 cut(s) 271, 724
NlaIV GGNNCC 3 cut(s) 379, 841, 1042
NmeAIII GCCGAG 3 cut(s) 225, 351, 426
NmuCI GTSAC 2 cut(s) 469, 697
NruI TCGCGA 2 cut(s) 133, 215
NspI RCATGY 2 cut(s) 271, 724
PasI CCCWGGG 1 cut(s) 1045
PciSI GCTCTTC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 3 cut(s) 219, 360, 378
PctI GAATGC 1 cut(s) 859
PdiI GCCGGC 2 cut(s) 838, 912
PfeI GAWTC 5 cut(s) 56, 90, 301, 692, 874
PfoI TCCNGGA 1 cut(s) 296
PkrI GCNGC 4 cut(s) 7, 309, 318, 377
PleI GAGTC 2 cut(s) 913, 1073
PluTI GGCGCC 1 cut(s) 843
PmaCI CACGTG 2 cut(s) 313, 345
PmlI CACGTG 2 cut(s) 313, 345
PpsI GAGTC 2 cut(s) 913, 1073
Ppu21I YACGTR 3 cut(s) 313, 345, 661
Psp6I CCWGG 4 cut(s) 296, 637, 973, 1044
PspCI CACGTG 2 cut(s) 313, 345
PspFI CCCAGC 1 cut(s) 387
PspGI CCWGG 4 cut(s) 296, 637, 973, 1044
PspN4I GGNNCC 3 cut(s) 379, 841, 1042
PspPI GGNCC 3 cut(s) 769, 787, 977
PsrI GAACNNNNNNTAC 2 cut(s) 650, 682
PstI CTGCAG 1 cut(s) 1078
PstNI CAGNNNCTG 1 cut(s) 79
PsuI RGATCY 3 cut(s) 190, 538, 1040
PvuII CAGCTG 1 cut(s) 391
RruI TCGCGA 2 cut(s) 133, 215
RsaI GTAC 6 cut(s) 257, 401, 617, 659, 1021, 1133
RsaNI GTAC 6 cut(s) 256, 400, 616, 658, 1020, 1132
RseI CAYNNNNRTG 1 cut(s) 761
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 2 cut(s) 585, 957
SatI GCNGC 4 cut(s) 6, 308, 317, 376
Sau3AI GATC 4 cut(s) 190, 538, 561, 1040
Sau96I GGNCC 3 cut(s) 769, 787, 977
ScaI AGTACT 1 cut(s) 257
SchI GAGTC 2 cut(s) 913, 1073
ScrFI CCNGG 5 cut(s) 298, 410, 639, 975, 1046
SduI GDGCHC 1 cut(s) 436
SfaNI GCATC 5 cut(s) 357, 718, 730, 814, 992
SfcI CTRYAG 1 cut(s) 1074
SfoI GGCGCC 1 cut(s) 841
SgrAI CRCCGGYG 1 cut(s) 910
SinI GGWCC 2 cut(s) 787, 977
SmiMI CAYNNNNRTG 1 cut(s) 761
SmlI CTYRAG 1 cut(s) 921
SmoI CTYRAG 1 cut(s) 921
Sse9I AATT 5 cut(s) 27, 586, 676, 888, 1108
SsiI CCGC 4 cut(s) 375, 477, 512, 753
SspDI GGCGCC 1 cut(s) 839
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 5 cut(s) 296, 408, 637, 973, 1044
StyI CCWWGG 1 cut(s) 816
TaaI ACNGT 3 cut(s) 16, 431, 954
TaiI ACGT 7 cut(s) 165, 201, 315, 347, 357, 663, 945
TaqI TCGA 3 cut(s) 650, 690, 783
TaqII GACCGA 1 cut(s) 35
TasI AATT 5 cut(s) 27, 586, 676, 888, 1108
TatI WGTACW 2 cut(s) 255, 1131
TauI GCSGC 1 cut(s) 378
TfiI GAWTC 5 cut(s) 56, 90, 301, 692, 874
Tru1I TTAA 2 cut(s) 585, 957
Tru9I TTAA 2 cut(s) 585, 957
TscAI CASTG 2 cut(s) 19, 957
TseFI GTSAC 2 cut(s) 469, 697
TseI GCWGC 3 cut(s) 5, 307, 316
Tsp45I GTSAC 2 cut(s) 469, 697
TspDTI ATGAA 1 cut(s) 223
TspGWI ACGGA 2 cut(s) 117, 603
TspRI CASTG 2 cut(s) 19, 957
VpaK11BI GGWCC 2 cut(s) 787, 977
XceI RCATGY 2 cut(s) 271, 724
XcmI CCANNNNNNNNNTGG 2 cut(s) 677, 763
XmiI GTMKAC 1 cut(s) 426
XspI CTAG 1 cut(s) 170
ZrmI AGTACT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.