Rorug05G0217000

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007295
Physical Location & Seq
Forward (+)
22322528 .. 22323962
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0217000.1

Sequence Viewer

Length: 1332 bp
ATGTCTTCTTCTTCCTTTACCATGTCAGTATTGCTCTCCCTGTCTCTTTTCTCACTCTTTGCATTCATTGCTCAGGCTCAAGTTCCGGCAAACCAAACTTTCAAGTTTGTCAACGACCAAGAGTTTGGCCCTTACATAGTAGAATACGACGGAAGCTACCGTATGCTTAGCATCTTTGCCGCTCCTTTCCAACTTGCCTTCTACAACACAACCCCGAATGCCTTCACGTTGGCTCTCCGGATGGGCCTGACCCGCTCGGAGTCCCTCTTCCGTTGGGTTTGGGAGGCCAACCGAGGAAACCCCGTTGGCGAAAATGCCACCCTCACTTTTGGGACTGACGGAAACCTGGTCTTGGCCCACGCCGACGGCCGCGTGGCATGGCAAACCAACACGGCCAATAAGGGTGTCGTGGGCCTCAAGTTGCTTCCAACCGGAAACTTGGTGCTCTACAACTCGAAGGGCAGTTTCGTTTGGCAAAGCTTCGACTACCCGACGGATACTTTGTTGGTTGGCCAGTCGCTTAGGGCAGGGGGAGTGAACAAGCTCGTGAGCCGGCTATCTGAGGCAGAAAACAAAGACGGGCCATACAGCTTGGTGATGGAGCCTAAAGGATTGGCTTTGTACTACAAAAGCGCCAATTCCCCAAAGCCTTTGCTCTACTTCTCATTCTCTGAAAGGATTAACATTCAGAAGGGCACTTTGGACCATGTGACAGTAAATGTGTCTCCGGATACGGATGAGGGTTTTGCCTATAACATAAACCTAGATTATCAAGTGGGTAACACTACTACCTCGGGTGGAATCATTCTAGCAAGACCCAAGTACAACAGCACGCTGACATTCCTCAGGCTCGGCATCGATGGAAATGTTAAGCTTTACACTTACAACGACAAGGTCGATTGGGGTGCTTGGGAGGTGACCTTTAGTCTTTTCGACAGAGATAATTGGATTTGGGAAACCGAGTGCCAATTGCCCGAGCGATGCGGAAGCTTTGGGGTTTGCGAGGACAGCCAGTGTGTTGCTTGCCCATCTTCTAGTGGAGTCTTGTTGGGTTGGAGCAAGACTTGTGCGGCCGAGAAGCTAACTTCTTGTGATGCAAAGAGCTTCCACTACTACAAAATCGAAGGGGTTGATCATTTCTTGAGCAAGTTCACTAGTGGATCGGCTACAACGGAGGTCGCTTGTGGTAAAAAGTGCACTTCCGACTGCAAGTGTCTGGGGTACTTTTACAACAGGGATTCGTCAAGGTGTTGGATAGCTTATGATTTGAAGACCTTGACCAAAGTTGCCAACTCCACTCATGTGGGTTACATCAAGGTATCTAATCACTAG

Protein Analysis

443

Amino Acids

49.09

Weight (kDa)

6.6

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 93 - 177 1.2e-19 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 182, 255
AccII CGCG 1 cut(s) 372
AccIII TCCGGA 2 cut(s) 237, 727
AciI CCGC 5 cut(s) 180, 253, 370, 984, 1070
AclWI GGATC 1 cut(s) 1168
AcoI YGGCCR 4 cut(s) 367, 393, 511, 1071
AfaI GTAC 3 cut(s) 623, 824, 1223
AfiI CCNNNNNNNGG 1 cut(s) 352
AgsI TTSAA 2 cut(s) 103, 1270
AhdI GACNNNNNGTC 1 cut(s) 924
AhlI ACTAGT 1 cut(s) 1154
AjnI CCWGG 1 cut(s) 345
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AleI CACNNNNGTG 1 cut(s) 1301
AluBI AGCT 9 cut(s) 156, 480, 544, 591, 874, 990, 1081, 1104, 1259
AluI AGCT 9 cut(s) 156, 480, 544, 591, 874, 990, 1081, 1104, 1259
Alw21I GWGCWC 2 cut(s) 447, 1199
Alw26I GTCTC 2 cut(s) 48, 729
Alw44I GTGCAC 1 cut(s) 1195
AlwI GGATC 1 cut(s) 1168
Ama87I CYCGRG 2 cut(s) 793, 974
Aor13HI TCCGGA 2 cut(s) 237, 727
ApaLI GTGCAC 1 cut(s) 1195
ArsI GACNNNNNNTTYG 4 cut(s) 107, 139, 484, 516
Asp700I GAANNNNTTC 1 cut(s) 221
AspLEI GCGC 1 cut(s) 635
AspS9I GGNCC 6 cut(s) 128, 244, 355, 412, 581, 703
AsuHPI GGTGA 2 cut(s) 607, 928
AvaI CYCGRG 2 cut(s) 793, 974
AvaII GGWCC 1 cut(s) 703
AxyI CCTNAGG 1 cut(s) 845
BaeGI GKGCMC 2 cut(s) 698, 1199
BalI TGGCCA 1 cut(s) 513
BauI CACGAG 1 cut(s) 545
BbsI GAAGAC 1 cut(s) 1277
Bbv12I GWGCWC 2 cut(s) 447, 1199
BccI CCATC 4 cut(s) 235, 592, 854, 1036
BceAI ACGGC 2 cut(s) 382, 408
BcgI CGANNNNNNTGC 2 cut(s) 887, 921
BciT130I CCWGG 1 cut(s) 347
BciVI GTATCC 2 cut(s) 490, 724
BclI TGATCA 1 cut(s) 1132
BcoDI GTCTC 2 cut(s) 48, 729
BcuI ACTAGT 1 cut(s) 1154
BfaI CTAG 5 cut(s) 764, 809, 1035, 1155, 1330
BfoI RGCGCY 1 cut(s) 636
BfuI GTATCC 2 cut(s) 490, 724
BisI GCNGC 3 cut(s) 180, 370, 1071
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 3 cut(s) 181, 371, 1072
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 1 cut(s) 703
BmeRI GACNNNNNGTC 1 cut(s) 924
BmeT110I CYCGRG 2 cut(s) 793, 974
BmgT120I GGNCC 6 cut(s) 128, 244, 355, 412, 581, 703
BmiI GGNNCC 1 cut(s) 603
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 4 cut(s) 180, 864, 971, 1084
BpiI GAAGAC 1 cut(s) 1277
Bpu10I CCTNAGC 2 cut(s) 72, 521
Bpu1102I GCTNAGC 1 cut(s) 167
BpuEI CTTGAG 3 cut(s) 63, 401, 1162
Bsa29I ATCGAT 1 cut(s) 858
BsaJI CCNNGG 2 cut(s) 292, 792
BsaWI WCCGGW 3 cut(s) 237, 431, 727
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse118I RCCGGY 1 cut(s) 552
Bse1I ACTGG 2 cut(s) 514, 1012
Bse21I CCTNAGG 1 cut(s) 845
Bse3DI GCAATG 1 cut(s) 66
BseAI TCCGGA 2 cut(s) 237, 727
BseBI CCWGG 1 cut(s) 347
BseCI ATCGAT 1 cut(s) 858
BseDI CCNNGG 2 cut(s) 292, 792
BseGI GGATG 2 cut(s) 246, 742
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 3 cut(s) 86, 552, 859
BseNI ACTGG 2 cut(s) 514, 1012
BseSI GKGCMC 2 cut(s) 698, 1199
BseX3I CGGCCG 2 cut(s) 367, 1071
Bsh1236I CGCG 1 cut(s) 372
Bsh1285I CGRYCG 2 cut(s) 370, 1074
BshVI ATCGAT 1 cut(s) 858
BsiEI CGRYCG 2 cut(s) 370, 1074
BsiHKAI GWGCWC 2 cut(s) 447, 1199
BsiHKCI CYCGRG 2 cut(s) 793, 974
BsiSI CCGG 5 cut(s) 86, 238, 432, 553, 728
BslFI GGGAC 2 cut(s) 247, 346
BslI CCNNNNNNNGG 1 cut(s) 352
BsmAI GTCTC 2 cut(s) 48, 729
BsmFI GGGAC 2 cut(s) 247, 346
BsmI GAATGC 2 cut(s) 62, 223
BsoBI CYCGRG 2 cut(s) 793, 974
Bsp1286I GDGCHC 3 cut(s) 447, 698, 1199
Bsp13I TCCGGA 2 cut(s) 237, 727
Bsp143I GATC 2 cut(s) 1132, 1160
Bsp1720I GCTNAGC 1 cut(s) 167
BspACI CCGC 5 cut(s) 180, 253, 370, 984, 1070
BspCNI CTCAG 3 cut(s) 85, 553, 858
BspDI ATCGAT 1 cut(s) 858
BspEI TCCGGA 2 cut(s) 237, 727
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 603
BspPI GGATC 1 cut(s) 1168
BsrBI CCGCTC 2 cut(s) 182, 255
BsrDI GCAATG 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 552
BsrI ACTGG 2 cut(s) 514, 1012
BssAI RCCGGY 1 cut(s) 552
BssECI CCNNGG 2 cut(s) 292, 792
BssMI GATC 2 cut(s) 1132, 1160
BssSI CACGAG 1 cut(s) 545
Bst2BI CACGAG 1 cut(s) 545
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 2 cut(s) 161, 715
Bst6I CTCTTC 1 cut(s) 272
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 3 cut(s) 554, 833, 1024
BstDEI CTNAG 5 cut(s) 72, 167, 521, 561, 845
BstEII GGTNACC 1 cut(s) 916
BstF5I GGATG 2 cut(s) 246, 742
BstFNI CGCG 1 cut(s) 372
BstH2I RGCGCY 1 cut(s) 636
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 2 cut(s) 1135, 1163
BstMAI GTCTC 2 cut(s) 48, 729
BstMBI GATC 2 cut(s) 1132, 1160
BstMCI CGRYCG 2 cut(s) 370, 1074
BstMWI GCNNNNNNNGC 3 cut(s) 68, 252, 1008
BstNI CCWGG 1 cut(s) 347
BstPI GGTNACC 1 cut(s) 916
BstSCI CCNGG 1 cut(s) 345
BstSLI GKGCMC 2 cut(s) 698, 1199
BstUI CGCG 1 cut(s) 372
BstV2I GAAGAC 1 cut(s) 1277
BstXI CCANNNNNNTGG 2 cut(s) 125, 1303
BstZI CGGCCG 2 cut(s) 367, 1071
Bsu15I ATCGAT 1 cut(s) 858
Bsu36I CCTNAGG 1 cut(s) 845
BsuI GTATCC 2 cut(s) 490, 724
BsuTUI ATCGAT 1 cut(s) 858
BtgZI GCGATG 1 cut(s) 994
BtsCI GGATG 2 cut(s) 246, 742
BtsIMutI CAGTG 1 cut(s) 1019
Cac8I GCNNGC 3 cut(s) 554, 833, 1024
CfoI GCGC 1 cut(s) 635
Cfr10I RCCGGY 1 cut(s) 552
Cfr13I GGNCC 6 cut(s) 128, 244, 355, 412, 581, 703
ClaI ATCGAT 1 cut(s) 858
CsiI ACCWGGT 1 cut(s) 345
Csp6I GTAC 3 cut(s) 622, 823, 1222
CviAII CATG 4 cut(s) 22, 378, 707, 1301
CviQI GTAC 3 cut(s) 622, 823, 1222
DdeI CTNAG 5 cut(s) 72, 167, 521, 561, 845
DpnI GATC 2 cut(s) 1134, 1162
DpnII GATC 2 cut(s) 1132, 1160
DriI GACNNNNNGTC 1 cut(s) 924
EaeI YGGCCR 4 cut(s) 367, 393, 511, 1071
EagI CGGCCG 2 cut(s) 367, 1071
Eam1104I CTCTTC 1 cut(s) 272
Eam1105I GACNNNNNGTC 1 cut(s) 924
EarI CTCTTC 1 cut(s) 272
EclXI CGGCCG 2 cut(s) 367, 1071
Eco47I GGWCC 1 cut(s) 703
Eco52I CGGCCG 2 cut(s) 367, 1071
Eco81I CCTNAGG 1 cut(s) 845
Eco88I CYCGRG 2 cut(s) 793, 974
Eco91I GGTNACC 1 cut(s) 916
EcoO65I GGTNACC 1 cut(s) 916
EcoRII CCWGG 1 cut(s) 345
FaeI CATG 4 cut(s) 25, 381, 710, 1304
FaqI GGGAC 2 cut(s) 247, 346
FatI CATG 4 cut(s) 21, 377, 706, 1300
FauI CCCGC 1 cut(s) 260
FbaI TGATCA 1 cut(s) 1132
Fnu4HI GCNGC 3 cut(s) 180, 370, 1071
FokI GGATG 2 cut(s) 253, 749
Fsp4HI GCNGC 3 cut(s) 180, 370, 1071
FspBI CTAG 5 cut(s) 764, 809, 1035, 1155, 1330
GlaI GCGC 1 cut(s) 634
GluI GCNGC 3 cut(s) 180, 370, 1071
HaeII RGCGCY 1 cut(s) 636
HapII CCGG 5 cut(s) 86, 238, 432, 553, 728
HhaI GCGC 1 cut(s) 635
Hin1II CATG 4 cut(s) 25, 381, 710, 1304
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 3 cut(s) 478, 872, 988
HinfI GANTC 4 cut(s) 260, 801, 1041, 1238
HpaII CCGG 5 cut(s) 86, 238, 432, 553, 728
HphI GGTGA 2 cut(s) 607, 928
Hpy166II GTNNAC 4 cut(s) 112, 538, 1152, 1197
Hpy188I TCNGA 5 cut(s) 259, 562, 673, 690, 1204
Hpy188III TCNNGA 4 cut(s) 238, 547, 728, 1141
Hpy8I GTNNAC 4 cut(s) 112, 538, 1152, 1197
Hpy99I CGWCG 3 cut(s) 152, 368, 496
HpyAV CCTTC 5 cut(s) 208, 232, 451, 685, 1118
HpyCH4III ACNGT 2 cut(s) 161, 715
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 4 cut(s) 62, 1097, 1197, 1209
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 252, 1008
HpyF3I CTNAG 5 cut(s) 72, 167, 521, 561, 845
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 4 cut(s) 25, 381, 710, 1304
HspAI GCGC 1 cut(s) 633
Kpn2I TCCGGA 2 cut(s) 237, 727
KroI GCCGGC 1 cut(s) 552
KroNI GCCGGC 1 cut(s) 554
Ksp22I TGATCA 1 cut(s) 1132
Kzo9I GATC 2 cut(s) 1132, 1160
LmnI GCTCC 3 cut(s) 187, 601, 1056
LweI GCATC 4 cut(s) 180, 864, 971, 1084
MabI ACCWGGT 1 cut(s) 345
MaeI CTAG 5 cut(s) 764, 809, 1035, 1155, 1330
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 4 cut(s) 709, 779, 916, 1307
MalI GATC 2 cut(s) 1134, 1162
MbiI CCGCTC 2 cut(s) 182, 255
MboI GATC 2 cut(s) 1132, 1160
MboII GAAGA 4 cut(s) 3, 259, 1023, 1282
MfeI CAATTG 1 cut(s) 968
MhlI GDGCHC 3 cut(s) 447, 698, 1199
MlsI TGGCCA 1 cut(s) 513
MluCI AATT 3 cut(s) 637, 943, 968
MluNI TGGCCA 1 cut(s) 513
MlyI GAGTC 2 cut(s) 269, 1050
MmeI TCCRAC 5 cut(s) 214, 452, 1034, 1227, 1232
Mox20I TGGCCA 1 cut(s) 513
MroI TCCGGA 2 cut(s) 237, 727
MroNI GCCGGC 1 cut(s) 552
MroXI GAANNNNTTC 1 cut(s) 221
MscI TGGCCA 1 cut(s) 513
MseI TTAA 2 cut(s) 681, 870
MslI CAYNNNNRTG 1 cut(s) 1301
Msp20I TGGCCA 1 cut(s) 513
MspI CCGG 5 cut(s) 86, 238, 432, 553, 728
MspR9I CCNGG 1 cut(s) 347
MunI CAATTG 1 cut(s) 968
Mva1269I GAATGC 2 cut(s) 62, 223
MvaI CCWGG 1 cut(s) 347
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 68, 252, 1008
NaeI GCCGGC 1 cut(s) 554
NdeII GATC 2 cut(s) 1132, 1160
NgoMIV GCCGGC 1 cut(s) 552
NlaIII CATG 4 cut(s) 25, 381, 710, 1304
NlaIV GGNNCC 1 cut(s) 603
NmeAIII GCCGAG 2 cut(s) 831, 1099
NmuCI GTSAC 2 cut(s) 709, 916
OliI CACNNNNGTG 1 cut(s) 1301
PcsI WCGNNNNNNNCGW 1 cut(s) 894
PctI GAATGC 2 cut(s) 62, 223
PdiI GCCGGC 1 cut(s) 554
PdmI GAANNNNTTC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 801, 1238
PflFI GACNNNGTC 1 cut(s) 893
PkrI GCNGC 3 cut(s) 181, 371, 1072
PleI GAGTC 2 cut(s) 268, 1049
PpsI GAGTC 2 cut(s) 268, 1049
Psp6I CCWGG 1 cut(s) 345
PspEI GGTNACC 1 cut(s) 916
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 603
PspPI GGNCC 6 cut(s) 128, 244, 355, 412, 581, 703
PsyI GACNNNGTC 1 cut(s) 893
RsaI GTAC 3 cut(s) 623, 824, 1223
RsaNI GTAC 3 cut(s) 622, 823, 1222
RseI CAYNNNNRTG 1 cut(s) 1301
SaqAI TTAA 2 cut(s) 681, 870
SatI GCNGC 3 cut(s) 180, 370, 1071
Sau3AI GATC 2 cut(s) 1132, 1160
Sau96I GGNCC 6 cut(s) 128, 244, 355, 412, 581, 703
SchI GAGTC 2 cut(s) 269, 1050
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 3 cut(s) 447, 698, 1199
SexAI ACCWGGT 1 cut(s) 345
SfaNI GCATC 4 cut(s) 180, 864, 971, 1084
SinI GGWCC 1 cut(s) 703
SmiMI CAYNNNNRTG 1 cut(s) 1301
SmlI CTYRAG 3 cut(s) 78, 416, 1141
SmoI CTYRAG 3 cut(s) 78, 416, 1141
SpeI ACTAGT 1 cut(s) 1154
Sse9I AATT 3 cut(s) 637, 943, 968
SsiI CCGC 5 cut(s) 180, 253, 370, 984, 1070
SspMI CTAG 5 cut(s) 764, 809, 1035, 1155, 1330
StyD4I CCNGG 1 cut(s) 345
TaaI ACNGT 2 cut(s) 161, 715
TaiI ACGT 1 cut(s) 230
TaqI TCGA 6 cut(s) 455, 483, 858, 897, 933, 1122
TasI AATT 3 cut(s) 637, 943, 968
TatI WGTACW 2 cut(s) 621, 822
TauI GCSGC 3 cut(s) 182, 372, 1073
TfiI GAWTC 2 cut(s) 801, 1238
Tru1I TTAA 2 cut(s) 681, 870
Tru9I TTAA 2 cut(s) 681, 870
TscAI CASTG 1 cut(s) 1019
TseFI GTSAC 2 cut(s) 709, 916
Tsp45I GTSAC 2 cut(s) 709, 916
TspDTI ATGAA 1 cut(s) 55
TspGWI ACGGA 6 cut(s) 165, 260, 354, 509, 749, 1187
TspRI CASTG 1 cut(s) 1019
Tth111I GACNNNGTC 1 cut(s) 893
VneI GTGCAC 1 cut(s) 1195
VpaK11BI GGWCC 1 cut(s) 703
XmnI GAANNNNTTC 1 cut(s) 221
XspI CTAG 5 cut(s) 764, 809, 1035, 1155, 1330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.