Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007295

Physical Location & Seq

Genomic Coordinates Forward (+)

22337586 .. 22338876

Gene Structure 1291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0217100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGTCTTCCCCTACATTTACAAAGCCATTGCTCTCCCTGTTTCTTTTCTCCATCTTTGCTTTCATTGCTCAAGCTCAAGTTCCTGCAAATGAAACTTTCACGCTTGTCAATGAGGGAGAATTCGGGCCTTATGTTGTCGAGTATTTCGGAGACTACCGTATGCTGCCTCAGGTCTTCAGCTCCCCTTTCCAGCTTGGTTTCTATAACACCACCCCTAATGCCTTTACTCTTGCTCTTCGTATGGGTTTGACGCGTTCGGAGTCACTCATGCGTTGGGTTTGGGAGGCCAACCGTGGAAACCCTGTTGGCGAAAACGCCACTTTCTCTTTGGGGACCGACGGGAACCTCGTCTTGGCCAATGCTGATGGCCGTGTGGCGTGGCAAACCAACACTAGCAACAAAGGTGTAGTAGGTTTCACATTGCTTCCCACCGGCAACATGGTCCTCTATGACGCAAAGGGTAACTTTGTTTGGCAGAGTTTTGACTCCCCTACCGACACTTTGTTGGTCGGTCAATCTCTACGAGCTAGCGGAGTAAGCAAGCTTGTGAGCCGGGCGTCGGAGAAAGAAAACAAAGATGGTCCTTACAGCCTGGTCTTGGAGCCAAAGGGATTGTTTTTGTACTACAAGAGCAGCATCTCCAAAAAGTCACTGCTCTACTCTCAATTCACTAACATTCAGCAGGGAACTTTGGACAATGTGACGTTGAACAGCGCTACTGATGATGGTTTTGTTTGGGACTTATCTTTATTGACCTCGGGTGGAAACAATCTCTATCTAGCTAGACCCAAATTCAATGGCACCTTGACATACCTCAGGCTAGGAATTGATGGAAACATCAAGCTTTACACTTACTACGGCCAGTTGCCGGAGCGATGCGAGAGCTTGGGCGTTTGCGAGGACAACCAGTGCGTTGCTTGCCCAACATCTAACGGACTATCGGGTTGGAGCAAGACTTGTGCGTCGGAGAAGCTAACTTCATGCAAGGAAAACAGCTTTCACTACTACAAGGTTGAAGGTGTAGATCATTTCTTGAGCAAGTATAATAGAGGATCAGCTACAAAGGAGGTCGACTGTGGTAAGAAGTGTAGTTCCGACTGCAAGTGTCTGGGCTACTTTTACAACAGGGATACATCAAGGTGTTTGATAGCTTATGAGTTGAAGACCTTGACCAAAGTTGCAAATTCAACACATGTGGGTTTCATCAAGGCACCAAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

407

Amino Acids

45.04

Weight (kDa)

8.18

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	93 - 179	7.4e-19	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27500 AT2G27500 AT2G27500
fragaria_vesca	FvH4_3g24930 FvH4_3g24930 FvH4_3g24930 FvH4_3g24930
malus_domestica	MD00G1075400.v1.1 MD03G1144400.v1.1
prunus_persica	Prupe.6G130300_v2.0.a1 Prupe.6G130300_v2.0.a1
pyrus_communis	pycom03g09970 pycom11g13670
rosa_chinensis	RchiOBHm_Chr5g0044721
rosa_laevigata	RLG00000034292 RLG00000034293
rosa_multiflora	Rmu_sc0000228.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036310
rosa_rugosa	Rorug05G0216900 Rorug05G0217000 Rorug05G0217100
rosa_samantha	Rh5AG300400 Rh5BG307100 Rh5DG317200
rosa_wichuraiana	Rw5G027780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	961
AccB1I	GGYRCC	2 cut(s)	800, 1210
AccI	GTMKAC	1 cut(s)	1071
AccII	CGCG	1 cut(s)	253
AciI	CCGC	1 cut(s)	531
AclWI	GGATC	1 cut(s)	1060
AcoI	YGGCCR	3 cut(s)	354, 367, 859
AcsI	RAATTY	3 cut(s)	119, 791, 1183
AcuI	CTGAAG	1 cut(s)	160
AcyI	GRCGYC	1 cut(s)	557
AfaI	GTAC	1 cut(s)	623
AfeI	AGCGCT	1 cut(s)	715
AfiI	CCNNNNNNNGG	4 cut(s)	352, 559, 598, 868
AflIII	ACRYGT	2 cut(s)	251, 1192
AgsI	TTSAA	5 cut(s)	709, 796, 1016, 1162, 1188
AjnI	CCWGG	1 cut(s)	591
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	1060
Ama87I	CYCGRG	1 cut(s)	757
Aor51HI	AGCGCT	1 cut(s)	715
AoxI	GGCC	5 cut(s)	125, 285, 354, 367, 859
ApeKI	GCWGC	2 cut(s)	163, 633
ApoI	RAATTY	3 cut(s)	119, 791, 1183
AspLEI	GCGC	1 cut(s)	716
AspS9I	GGNCC	4 cut(s)	125, 333, 442, 581
AsuC2I	CCSGG	1 cut(s)	554
AsuNHI	GCTAGC	1 cut(s)	527
AvaI	CYCGRG	1 cut(s)	757
AvaII	GGWCC	3 cut(s)	333, 442, 581
AxyI	CCTNAGG	2 cut(s)	168, 815
BalI	TGGCCA	1 cut(s)	356
BanI	GGYRCC	2 cut(s)	800, 1210
BbsI	GAAGAC	2 cut(s)	166, 1169
BbvI	GCAGC	2 cut(s)	150, 645
BccI	CCATC	5 cut(s)	59, 359, 572, 719, 824
BceAI	ACGGC	2 cut(s)	354, 874
BciT130I	CCWGG	1 cut(s)	593
BciVI	GTATCC	1 cut(s)	1123
BcnI	CCSGG	1 cut(s)	554
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	6 cut(s)	393, 528, 779, 783, 821, 1222
BfoI	RGCGCY	1 cut(s)	717
BfuI	GTATCC	1 cut(s)	1123
BisI	GCNGC	2 cut(s)	164, 634
BlsI	GCNGC	2 cut(s)	165, 635
Bme1390I	CCNGG	2 cut(s)	554, 593
Bme18I	GGWCC	3 cut(s)	333, 442, 581
BmeT110I	CYCGRG	1 cut(s)	757
BmgT120I	GGNCC	4 cut(s)	125, 333, 442, 581
BmiI	GGNNCC	5 cut(s)	334, 344, 603, 802, 1212
BmrFI	CCNGG	2 cut(s)	554, 593
BmsI	GCATC	2 cut(s)	645, 866
BmtI	GCTAGC	1 cut(s)	531
BpiI	GAAGAC	2 cut(s)	166, 1169
BpuEI	CTTGAG	3 cut(s)	54, 60, 1054
BpuMI	CCSGG	1 cut(s)	554
BsaHI	GRCGYC	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	292, 756
Bsc4I	CCNNNNNNNGG	4 cut(s)	352, 559, 598, 868
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	2 cut(s)	862, 907
Bse21I	CCTNAGG	2 cut(s)	168, 815
Bse3DI	GCAATG	3 cut(s)	26, 63, 419
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	292, 756
BseLI	CCNNNNNNNGG	4 cut(s)	352, 559, 598, 868
BseMI	GCAATG	3 cut(s)	26, 63, 419
BseMII	CTCAG	2 cut(s)	182, 829
BseNI	ACTGG	2 cut(s)	862, 907
BseXI	GCAGC	2 cut(s)	150, 645
Bsh1236I	CGCG	1 cut(s)	253
BshFI	GGCC	5 cut(s)	127, 287, 356, 369, 861
BshNI	GGYRCC	2 cut(s)	800, 1210
BsiHKCI	CYCGRG	1 cut(s)	757
BsiSI	CCGG	3 cut(s)	432, 553, 869
BslFI	GGGAC	2 cut(s)	346, 752
BslI	CCNNNNNNNGG	4 cut(s)	352, 559, 598, 868
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	2 cut(s)	346, 752
BsnI	GGCC	5 cut(s)	127, 287, 356, 369, 861
BsoBI	CYCGRG	1 cut(s)	757
Bsp143I	GATC	2 cut(s)	1024, 1052
BspACI	CCGC	1 cut(s)	531
BspANI	GGCC	5 cut(s)	127, 287, 356, 369, 861
BspCNI	CTCAG	2 cut(s)	181, 828
BspFNI	CGCG	1 cut(s)	253
BspLI	GGNNCC	5 cut(s)	334, 344, 603, 802, 1212
BspOI	GCTAGC	1 cut(s)	531
BspPI	GGATC	1 cut(s)	1060
BspQI	GCTCTTC	1 cut(s)	240
BspT107I	GGYRCC	2 cut(s)	800, 1210
BsrDI	GCAATG	3 cut(s)	26, 63, 419
BsrFI	RCCGGY	1 cut(s)	431
BsrI	ACTGG	2 cut(s)	862, 907
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	2 cut(s)	292, 756
BssMI	GATC	2 cut(s)	1024, 1052
BssNI	GRCGYC	1 cut(s)	557
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	3 cut(s)	158, 293, 1076
Bst6I	CTCTTC	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	557
BstC8I	GCNNGC	3 cut(s)	529, 542, 919
BstDEI	CTNAG	2 cut(s)	168, 815
BstDSI	CCRYGG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	253
BstH2I	RGCGCY	1 cut(s)	717
BstHHI	GCGC	1 cut(s)	716
BstKTI	GATC	2 cut(s)	1027, 1055
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	2 cut(s)	1024, 1052
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 537, 918
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	1 cut(s)	1196
BstSCI	CCNGG	2 cut(s)	552, 591
BstUI	CGCG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	150, 645
BstV2I	GAAGAC	2 cut(s)	166, 1169
Bsu36I	CCTNAGG	2 cut(s)	168, 815
BsuI	GTATCC	1 cut(s)	1123
BsuRI	GGCC	5 cut(s)	127, 287, 356, 369, 861
BtgI	CCRYGG	1 cut(s)	292
BtgZI	GCGATG	1 cut(s)	889
BtsI	GCAGTG	1 cut(s)	650
BtsIMutI	CAGTG	2 cut(s)	650, 914
Cac8I	GCNNGC	3 cut(s)	529, 542, 919
CfoI	GCGC	1 cut(s)	716
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	4 cut(s)	125, 333, 442, 581
CseI	GACGC	4 cut(s)	259, 461, 546, 951
Csp6I	GTAC	1 cut(s)	622
CspCI	CAANNNNNGTGG	2 cut(s)	1176, 1211
CviAII	CATG	4 cut(s)	268, 439, 981, 1193
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	2 cut(s)	168, 815
DpnI	GATC	2 cut(s)	1026, 1054
DpnII	GATC	2 cut(s)	1024, 1052
DrdI	GACNNNNNNGTC	1 cut(s)	961
DseDI	GACNNNNNNGTC	1 cut(s)	961
EaeI	YGGCCR	3 cut(s)	354, 367, 859
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco47I	GGWCC	3 cut(s)	333, 442, 581
Eco47III	AGCGCT	1 cut(s)	715
Eco57I	CTGAAG	1 cut(s)	160
Eco81I	CCTNAGG	2 cut(s)	168, 815
Eco88I	CYCGRG	1 cut(s)	757
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	591
FaeI	CATG	4 cut(s)	271, 442, 984, 1196
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	2 cut(s)	346, 752
FatI	CATG	4 cut(s)	267, 438, 980, 1192
FblI	GTMKAC	1 cut(s)	1071
Fnu4HI	GCNGC	2 cut(s)	164, 634
Fsp4HI	GCNGC	2 cut(s)	164, 634
FspBI	CTAG	6 cut(s)	393, 528, 779, 783, 821, 1222
GlaI	GCGC	1 cut(s)	715
GluI	GCNGC	2 cut(s)	164, 634
HaeII	RGCGCY	1 cut(s)	717
HaeIII	GGCC	5 cut(s)	127, 287, 356, 369, 861
HapII	CCGG	3 cut(s)	432, 553, 869
HgaI	GACGC	4 cut(s)	259, 461, 546, 951
HhaI	GCGC	1 cut(s)	716
Hin1I	GRCGYC	1 cut(s)	557
Hin1II	CATG	4 cut(s)	271, 442, 984, 1196
Hin6I	GCGC	1 cut(s)	714
HinP1I	GCGC	1 cut(s)	714
HincII	GTYRAC	1 cut(s)	1072
HindII	GTYRAC	1 cut(s)	1072
HindIII	AAGCTT	2 cut(s)	542, 842
HinfI	GANTC	2 cut(s)	260, 485
HpaII	CCGG	3 cut(s)	432, 553, 869
Hpy166II	GTNNAC	1 cut(s)	1072
Hpy188I	TCNGA	5 cut(s)	149, 259, 562, 967, 1096
Hpy188III	TCNNGA	1 cut(s)	1033
Hpy8I	GTNNAC	1 cut(s)	1072
Hpy99I	CGWCG	3 cut(s)	341, 562, 967
HpyAV	CCTTC	1 cut(s)	1010
HpyCH4III	ACNGT	3 cut(s)	158, 293, 1076
HpyCH4IV	ACGT	1 cut(s)	704
HpyCH4V	TGCA	4 cut(s)	86, 984, 1101, 1181
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 537, 918
HpyF3I	CTNAG	2 cut(s)	168, 815
HpySE526I	ACGT	1 cut(s)	704
Hsp92I	GRCGYC	1 cut(s)	557
Hsp92II	CATG	4 cut(s)	271, 442, 984, 1196
HspAI	GCGC	1 cut(s)	714
Kzo9I	GATC	2 cut(s)	1024, 1052
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	4 cut(s)	185, 601, 871, 948
Lsp1109I	GCAGC	2 cut(s)	150, 645
LweI	GCATC	2 cut(s)	645, 866
MaeI	CTAG	6 cut(s)	393, 528, 779, 783, 821, 1222
MaeII	ACGT	1 cut(s)	704
MaeIII	GTNAC	4 cut(s)	261, 461, 648, 700
MalI	GATC	2 cut(s)	1026, 1054
MboI	GATC	2 cut(s)	1024, 1052
MboII	GAAGA	3 cut(s)	166, 227, 1174
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	5 cut(s)	119, 665, 791, 825, 1183
MluI	ACGCGT	1 cut(s)	251
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	2 cut(s)	269, 479
MmeI	TCCRAC	4 cut(s)	540, 926, 945, 1119
Mox20I	TGGCCA	1 cut(s)	356
MscI	TGGCCA	1 cut(s)	356
MslI	CAYNNNNRTG	1 cut(s)	1138
Msp20I	TGGCCA	1 cut(s)	356
MspI	CCGG	3 cut(s)	432, 553, 869
MspR9I	CCNGG	2 cut(s)	554, 593
MvaI	CCWGG	1 cut(s)	593
MvnI	CGCG	1 cut(s)	253
MwoI	GCNNNNNNNGC	3 cut(s)	65, 537, 918
NciI	CCSGG	1 cut(s)	554
NdeII	GATC	2 cut(s)	1024, 1052
NheI	GCTAGC	1 cut(s)	527
NlaIII	CATG	4 cut(s)	271, 442, 984, 1196
NlaIV	GGNNCC	5 cut(s)	334, 344, 603, 802, 1212
NmuCI	GTSAC	3 cut(s)	261, 648, 700
NspI	RCATGY	1 cut(s)	1196
PciI	ACATGT	1 cut(s)	1192
PciSI	GCTCTTC	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PkrI	GCNGC	2 cut(s)	165, 635
PleI	GAGTC	2 cut(s)	268, 479
PpsI	GAGTC	2 cut(s)	268, 479
PscI	ACATGT	1 cut(s)	1192
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	5 cut(s)	334, 344, 603, 802, 1212
PspPI	GGNCC	4 cut(s)	125, 333, 442, 581
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
RseI	CAYNNNNRTG	1 cut(s)	1138
SalI	GTCGAC	1 cut(s)	1070
SapI	GCTCTTC	1 cut(s)	240
SatI	GCNGC	2 cut(s)	164, 634
Sau3AI	GATC	2 cut(s)	1024, 1052
Sau96I	GGNCC	4 cut(s)	125, 333, 442, 581
SchI	GAGTC	2 cut(s)	269, 479
ScrFI	CCNGG	2 cut(s)	554, 593
SfaNI	GCATC	2 cut(s)	645, 866
SinI	GGWCC	3 cut(s)	333, 442, 581
SmiMI	CAYNNNNRTG	1 cut(s)	1138
SmlI	CTYRAG	3 cut(s)	69, 75, 1033
SmoI	CTYRAG	3 cut(s)	69, 75, 1033
Sse9I	AATT	5 cut(s)	119, 665, 791, 825, 1183
SsiI	CCGC	1 cut(s)	531
SspMI	CTAG	6 cut(s)	393, 528, 779, 783, 821, 1222
StyD4I	CCNGG	2 cut(s)	552, 591
TaaI	ACNGT	3 cut(s)	158, 293, 1076
TaiI	ACGT	1 cut(s)	707
TaqI	TCGA	2 cut(s)	138, 1071
TaqII	GACCGA	2 cut(s)	350, 500
TasI	AATT	5 cut(s)	119, 665, 791, 825, 1183
TatI	WGTACW	1 cut(s)	621
TscAI	CASTG	2 cut(s)	657, 914
TseFI	GTSAC	3 cut(s)	261, 648, 700
TseI	GCWGC	2 cut(s)	163, 633
Tsp45I	GTSAC	3 cut(s)	261, 648, 700
TspDTI	ATGAA	4 cut(s)	52, 105, 969, 1192
TspGWI	ACGGA	1 cut(s)	948
TspRI	CASTG	2 cut(s)	657, 914
VpaK11BI	GGWCC	3 cut(s)	333, 442, 581
XapI	RAATTY	3 cut(s)	119, 791, 1183
XceI	RCATGY	1 cut(s)	1196
XcmI	CCANNNNNNNNNTGG	2 cut(s)	325, 436
XmiI	GTMKAC	1 cut(s)	1071
XspI	CTAG	6 cut(s)	393, 528, 779, 783, 821, 1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.