Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007295

Physical Location & Seq

Genomic Coordinates Forward (+)

10122354 .. 10124598

Gene Structure 2245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G130300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCAAGCTACACTGTCCTATTTAAAATTATTCTGGTCCTTCTTAGTCTCTCAGATTCAGCTGTTCATGTCCTCAGCCTGAGCTTCGGGATCAACTATGGACAAATAGCCAACAACCTACCATCTCCCTCAAGAGTCTCCGTCCTTCTCCAAACTCTAAACGTCAGCAGAGTGAAACTCTACGACGCCGACCCGAACGTCCTCCAAGCATTCTCAAACTCACAAGTTGATTTCATCATAGGACTCGGCAACGAAAATTTGCAGAACATGAAGGATCCTCTCAAGGCCCAAGCTTGGATCCAGCAGCACGTCCAGCCTCACCTTCCCCAGACAAAAATCACCTGCATCACCGTGGGAAACGAAATCCTCGGCGGAAACGACACTCAGCTCATGTCGTATCTCCTCCCTGCAATGCAATCTGTCTATAGAGCTCTTGTTGATCTTGGGCTCTCCAAGCAAGTTACTGTAACAACAGCACATTCTCTTACTATTTTGGGAAACTCCTACCCTCCTTCATCTGGGAGTTTTAAGCAAGATCTTGCTCAGTATATCCAGCCAATTCTCAGTTTCCATGCACAAGTTAATTCACCTTTTCTCATAAATGCATATCCATATTTTGCTTACAAGGACAACCCTGGAGAAGTTCCATTAGAGTATGTGCTTTTTCAGCCTAATTCTGGCATGGTTGATTCAGTTACCAATCTGCACTATGACAACATGTTGGATGCTCAGATTGATGCTGTTTATGCTGCCATCAAGGCAATGGGGCATACCGATGTCGAAGTGCGAATCTCCGAGACGGGTTGGCCTTCGAAGGGGGATCCGAATGAGGCCGGAGCCACGCCGGAGAATGCAGGGTTGTACAATGGGAATTTGATGAGGAAACTTGAAGAGAGGAAAGGAACTCCGGCTAAGCCTTCTGTTCCAATAGACATTTATGTTTTTGCACTTTTTAATGAGGATTTGAAGCCTGGCCCTGCATCAGAAAGGAATTATGGGCTCTATTATCCTGATGGCACACCAGTTTATGATATTGGCTTCAAGGGTTATCTCCCTGAGCTAACCTTTACTGCCGACTCAAATAAAAATAATGTCTTGTCCATCTTCAACTTTCTGATCTTTCTTACTGTGTACTTGTTATTATCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

384

Amino Acids

42.2

Weight (kDa)

5.05

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27500 AT2G27500 AT2G27500
fragaria_vesca	FvH4_3g24930 FvH4_3g24930 FvH4_3g24930 FvH4_3g24930
malus_domestica	MD00G1075400.v1.1 MD03G1144400.v1.1
prunus_persica	Prupe.6G130300_v2.0.a1 Prupe.6G130300_v2.0.a1
pyrus_communis	pycom03g09970 pycom11g13670
rosa_chinensis	RchiOBHm_Chr5g0044721
rosa_laevigata	RLG00000034292 RLG00000034293
rosa_multiflora	Rmu_sc0000228.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036310
rosa_rugosa	Rorug05G0216900 Rorug05G0217000 Rorug05G0217100
rosa_samantha	Rh5AG300400 Rh5BG307100 Rh5DG317200
rosa_wichuraiana	Rw5G027780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	350
AasI	GACNNNNNNGTC	1 cut(s)	197
Acc36I	ACCTGC	1 cut(s)	350
AciI	CCGC	1 cut(s)	372
AclWI	GGATC	7 cut(s)	98, 269, 282, 292, 305, 815, 828
AcsI	RAATTY	2 cut(s)	256, 871
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	2 cut(s)	863, 1133
AfiI	CCNNNNNNNGG	4 cut(s)	294, 518, 677, 815
AflIII	ACRYGT	1 cut(s)	717
AgsI	TTSAA	4 cut(s)	890, 967, 1042, 1108
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	2 cut(s)	634, 970
AluBI	AGCT	7 cut(s)	9, 62, 84, 293, 388, 431, 1060
AluI	AGCT	7 cut(s)	9, 62, 84, 293, 388, 431, 1060
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	3 cut(s)	53, 142, 791
AlwI	GGATC	7 cut(s)	98, 269, 282, 292, 305, 815, 828
AoxI	GGCC	4 cut(s)	285, 806, 831, 973
ApeKI	GCWGC	2 cut(s)	304, 749
ApoI	RAATTY	2 cut(s)	256, 871
AspS9I	GGNCC	3 cut(s)	37, 286, 974
AsuHPI	GGTGA	4 cut(s)	311, 331, 340, 579
AsuII	TTCGAA	1 cut(s)	812
AvaII	GGWCC	1 cut(s)	37
BamHI	GGATCC	3 cut(s)	274, 297, 820
BanII	GRGCYC	3 cut(s)	433, 450, 1002
Bbv12I	GWGCWC	1 cut(s)	433
BbvCI	CCTCAGC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	316, 736
BccI	CCATC	4 cut(s)	130, 761, 1007, 1109
BciT130I	CCWGG	2 cut(s)	636, 972
BcoDI	GTCTC	3 cut(s)	53, 142, 791
BfmI	CTRYAG	1 cut(s)	424
BfuAI	ACCTGC	1 cut(s)	350
BglI	GCCNNNNNGGC	1 cut(s)	758
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	2 cut(s)	305, 750
BlpI	GCTNAGC	1 cut(s)	912
BlsI	GCNGC	2 cut(s)	306, 751
Bme1390I	CCNGG	2 cut(s)	636, 972
Bme18I	GGWCC	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	3 cut(s)	37, 286, 974
BmiI	GGNNCC	4 cut(s)	276, 299, 822, 838
BmrFI	CCNGG	2 cut(s)	636, 972
BmsI	GCATC	4 cut(s)	354, 715, 727, 989
BplI	GAGNNNNNCTC	2 cut(s)	162, 194
BpmI	CTGGAG	1 cut(s)	657
Bpu10I	CCTNAGC	3 cut(s)	74, 80, 1056
Bpu1102I	GCTNAGC	1 cut(s)	912
Bpu14I	TTCGAA	1 cut(s)	812
BpuEI	CTTGAG	2 cut(s)	115, 266
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	351, 367, 634
Bsc4I	CCNNNNNNNGG	4 cut(s)	294, 518, 677, 815
Bse1I	ACTGG	1 cut(s)	1022
Bse3DI	GCAATG	2 cut(s)	417, 768
BseBI	CCWGG	2 cut(s)	636, 972
BseDI	CCNNGG	3 cut(s)	351, 367, 634
BseGI	GGATG	1 cut(s)	730
BseLI	CCNNNNNNNGG	4 cut(s)	294, 518, 677, 815
BseMI	GCAATG	2 cut(s)	417, 768
BseMII	CTCAG	8 cut(s)	66, 71, 88, 398, 557, 577, 743, 1047
BseNI	ACTGG	1 cut(s)	1022
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	316, 736
BsgI	GTGCAG	1 cut(s)	689
BshFI	GGCC	4 cut(s)	287, 808, 833, 975
BsiHKAI	GWGCWC	1 cut(s)	433
BsiSI	CCGG	3 cut(s)	834, 845, 908
BslI	CCNNNNNNNGG	4 cut(s)	294, 518, 677, 815
BsmAI	GTCTC	3 cut(s)	53, 142, 791
BsmBI	CGTCTC	1 cut(s)	791
BsmI	GAATGC	2 cut(s)	209, 856
BsnI	GGCC	4 cut(s)	287, 808, 833, 975
Bsp119I	TTCGAA	1 cut(s)	812
Bsp1286I	GDGCHC	3 cut(s)	433, 450, 1002
Bsp1407I	TGTACA	1 cut(s)	861
Bsp143I	GATC	7 cut(s)	90, 274, 297, 439, 535, 820, 1116
Bsp1720I	GCTNAGC	1 cut(s)	912
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	4 cut(s)	287, 808, 833, 975
BspCNI	CTCAG	8 cut(s)	65, 72, 87, 397, 556, 576, 742, 1048
BspLI	GGNNCC	4 cut(s)	276, 299, 822, 838
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	7 cut(s)	98, 269, 282, 292, 305, 815, 828
BspT104I	TTCGAA	1 cut(s)	812
BsrDI	GCAATG	2 cut(s)	417, 768
BsrGI	TGTACA	1 cut(s)	861
BsrI	ACTGG	1 cut(s)	1022
BssECI	CCNNGG	3 cut(s)	351, 367, 634
BssMI	GATC	7 cut(s)	90, 274, 297, 439, 535, 820, 1116
BssNI	GRCGYC	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	636, 972
Bst4CI	ACNGT	4 cut(s)	16, 352, 466, 1129
Bst6I	CTCTTC	1 cut(s)	885
BstACI	GRCGYC	1 cut(s)	186
BstAUI	TGTACA	1 cut(s)	861
BstBI	TTCGAA	1 cut(s)	812
BstC8I	GCNNGC	1 cut(s)	7
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	730
BstKTI	GATC	7 cut(s)	93, 277, 300, 442, 538, 823, 1119
BstMAI	GTCTC	3 cut(s)	53, 142, 791
BstMBI	GATC	7 cut(s)	90, 274, 297, 439, 535, 820, 1116
BstMWI	GCNNNNNNNGC	5 cut(s)	313, 454, 667, 746, 758
BstNI	CCWGG	2 cut(s)	636, 972
BstNSI	RCATGY	1 cut(s)	721
BstSCI	CCNGG	2 cut(s)	634, 970
BstSFI	CTRYAG	1 cut(s)	424
BstV1I	GCAGC	2 cut(s)	316, 736
BstX2I	RGATCY	4 cut(s)	274, 297, 535, 820
BstYI	RGATCY	4 cut(s)	274, 297, 535, 820
BsuRI	GGCC	4 cut(s)	287, 808, 833, 975
BtgI	CCRYGG	1 cut(s)	351
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	730
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	37, 286, 974
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	862, 1132
CviAII	CATG	6 cut(s)	68, 268, 391, 572, 682, 718
CviQI	GTAC	2 cut(s)	862, 1132
DpnI	GATC	7 cut(s)	92, 276, 299, 441, 537, 822, 1118
DpnII	GATC	7 cut(s)	90, 274, 297, 439, 535, 820, 1116
DraI	TTTAAA	1 cut(s)	25
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	885
EarI	CTCTTC	1 cut(s)	885
EciI	GGCGGA	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	431
Eco24I	GRGCYC	3 cut(s)	433, 450, 1002
Eco47I	GGWCC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	634, 970
EcoT22I	ATGCAT	1 cut(s)	607
EcoT38I	GRGCYC	3 cut(s)	433, 450, 1002
Esp3I	CGTCTC	1 cut(s)	791
FaeI	CATG	6 cut(s)	71, 271, 394, 575, 685, 721
FatI	CATG	6 cut(s)	67, 267, 390, 571, 681, 717
Fnu4HI	GCNGC	2 cut(s)	305, 750
FokI	GGATG	1 cut(s)	737
FriOI	GRGCYC	3 cut(s)	433, 450, 1002
Fsp4HI	GCNGC	2 cut(s)	305, 750
GluI	GCNGC	2 cut(s)	305, 750
GsuI	CTGGAG	1 cut(s)	657
HaeIII	GGCC	4 cut(s)	287, 808, 833, 975
HapII	CCGG	3 cut(s)	834, 845, 908
HgaI	GACGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	6 cut(s)	71, 271, 394, 575, 685, 721
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	6 cut(s)	56, 135, 243, 689, 789, 1076
HpaII	CCGG	3 cut(s)	834, 845, 908
HphI	GGTGA	4 cut(s)	311, 331, 340, 579
Hpy166II	GTNNAC	1 cut(s)	1132
Hpy188I	TCNGA	7 cut(s)	55, 732, 796, 825, 985, 1116, 1147
Hpy188III	TCNNGA	3 cut(s)	88, 132, 1010
Hpy8I	GTNNAC	1 cut(s)	1132
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	8 cut(s)	50, 155, 265, 332, 522, 808, 819, 927
HpyCH4III	ACNGT	4 cut(s)	16, 352, 466, 1129
HpyCH4IV	ACGT	3 cut(s)	162, 198, 309
HpyF10VI	GCNNNNNNNGC	5 cut(s)	313, 454, 667, 746, 758
HpySE526I	ACGT	3 cut(s)	162, 198, 309
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	6 cut(s)	71, 271, 394, 575, 685, 721
Kzo9I	GATC	7 cut(s)	90, 274, 297, 439, 535, 820, 1116
LmnI	GCTCC	1 cut(s)	836
Lsp1109I	GCAGC	2 cut(s)	316, 736
LweI	GCATC	4 cut(s)	354, 715, 727, 989
MaeII	ACGT	3 cut(s)	162, 198, 309
MaeIII	GTNAC	3 cut(s)	460, 466, 694
MalI	GATC	7 cut(s)	92, 276, 299, 441, 537, 822, 1118
MboI	GATC	7 cut(s)	90, 274, 297, 439, 535, 820, 1116
MboII	GAAGA	2 cut(s)	902, 1096
MflI	RGATCY	4 cut(s)	274, 297, 535, 820
MhlI	GDGCHC	3 cut(s)	433, 450, 1002
MluCI	AATT	7 cut(s)	27, 256, 558, 583, 673, 871, 991
MlyI	GAGTC	3 cut(s)	144, 237, 1070
MmeI	TCCRAC	1 cut(s)	702
Mph1103I	ATGCAT	1 cut(s)	607
MseI	TTAA	5 cut(s)	24, 528, 582, 954, 1150
MslI	CAYNNNNRTG	2 cut(s)	350, 774
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	3 cut(s)	834, 845, 908
MspR9I	CCNGG	2 cut(s)	636, 972
Mva1269I	GAATGC	2 cut(s)	209, 856
MvaI	CCWGG	2 cut(s)	636, 972
MwoI	GCNNNNNNNGC	5 cut(s)	313, 454, 667, 746, 758
NdeII	GATC	7 cut(s)	90, 274, 297, 439, 535, 820, 1116
NlaIII	CATG	6 cut(s)	71, 271, 394, 575, 685, 721
NlaIV	GGNNCC	4 cut(s)	276, 299, 822, 838
NmeAIII	GCCGAG	2 cut(s)	225, 348
NsiI	ATGCAT	1 cut(s)	607
NspI	RCATGY	1 cut(s)	721
NspV	TTCGAA	1 cut(s)	812
PaqCI	CACCTGC	1 cut(s)	350
PciI	ACATGT	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PctI	GAATGC	2 cut(s)	209, 856
PfeI	GAWTC	3 cut(s)	56, 689, 789
PkrI	GCNGC	2 cut(s)	306, 751
PleI	GAGTC	3 cut(s)	143, 237, 1070
PpsI	GAGTC	3 cut(s)	143, 237, 1070
PscI	ACATGT	1 cut(s)	717
Psp124BI	GAGCTC	1 cut(s)	433
Psp6I	CCWGG	2 cut(s)	634, 970
PspGI	CCWGG	2 cut(s)	634, 970
PspN4I	GGNNCC	4 cut(s)	276, 299, 822, 838
PspPI	GGNCC	3 cut(s)	37, 286, 974
PsuI	RGATCY	4 cut(s)	274, 297, 535, 820
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	863, 1133
RsaNI	GTAC	2 cut(s)	862, 1132
RseI	CAYNNNNRTG	2 cut(s)	350, 774
SacI	GAGCTC	1 cut(s)	433
SaqAI	TTAA	5 cut(s)	24, 528, 582, 954, 1150
SatI	GCNGC	2 cut(s)	305, 750
Sau3AI	GATC	7 cut(s)	90, 274, 297, 439, 535, 820, 1116
Sau96I	GGNCC	3 cut(s)	37, 286, 974
SchI	GAGTC	3 cut(s)	144, 237, 1070
ScrFI	CCNGG	2 cut(s)	636, 972
SduI	GDGCHC	3 cut(s)	433, 450, 1002
SfaNI	GCATC	4 cut(s)	354, 715, 727, 989
SfcI	CTRYAG	1 cut(s)	424
SfuI	TTCGAA	1 cut(s)	812
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	2 cut(s)	350, 774
SmlI	CTYRAG	2 cut(s)	130, 281
SmoI	CTYRAG	2 cut(s)	130, 281
Sse9I	AATT	7 cut(s)	27, 256, 558, 583, 673, 871, 991
SsiI	CCGC	1 cut(s)	372
SstI	GAGCTC	1 cut(s)	433
StyD4I	CCNGG	2 cut(s)	634, 970
TaaI	ACNGT	4 cut(s)	16, 352, 466, 1129
TaiI	ACGT	3 cut(s)	165, 201, 312
TaqI	TCGA	2 cut(s)	780, 812
TasI	AATT	7 cut(s)	27, 256, 558, 583, 673, 871, 991
TatI	WGTACW	2 cut(s)	861, 1131
TfiI	GAWTC	3 cut(s)	56, 689, 789
Tru1I	TTAA	5 cut(s)	24, 528, 582, 954, 1150
Tru9I	TTAA	5 cut(s)	24, 528, 582, 954, 1150
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	2 cut(s)	304, 749
TspDTI	ATGAA	4 cut(s)	56, 223, 284, 504
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	2 cut(s)	256, 871
XceI	RCATGY	1 cut(s)	721
XcmI	CCANNNNNNNNNTGG	1 cut(s)	760
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.