pycom11g13670

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0007295
Physical Location & Seq
Forward (+)
13245795 .. 13247553
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g13670.1

Sequence Viewer

Length: 1116 bp
ATGGCAACCTCCACTGTCCTATTCACAATTATTCTGCTCTTCCTCGGTCTGTCGGATTCAACACTCCAAGTCCAGAGCCTGAGCTTCGGAATCAACTATGGACAAATAGCCAACAACCTCCCATCTCCGTCGCGAGTGGCCGTCCTCCTCCAGTCCCTCAATGTCAGCCGCGTCAAACTCTACGACGCCGATCCCAACGTCCTCCAAGCCTTCTCCAACTCCGACGTCGACTTCATCATCGGCCTCGGCAACGAGTACTTGCAGAGCATGTCCACCGACCCTCTCACAGCCCAGTCCTGGATTCAGCAGAACGTGCAGCCCTATCTCCCCCAGACCAAAATCACGTGCATCAATGTCGGAAACGAAGTCCTCGGCGGCAACGACACCCAGCTCTGGTCGTACCTCCTCCCGGCAATGCAATCCGTCTACCGCGCCCTCGTCGCCCTCGGCCTTTCCAAACAAGTAGCTGTCACAACCGCGCACTCGCTTACTATTTTAGGAAACTCCTACCCACCGTCGGCGGGGAGTTTCCGACAAGATCTCACTCAGTATATCCAGCCGATCCTCGGCTTCCACTCGCAAGTTAATTCGCCCTTTTTGATAAATGCTTATCCCTACTTTGCTTACAAGGCCAGTCCAAGTGAAGTTTCTTTGGAGTACGCGCTGTTCCAGCCTAATTCCGGCATGGACGATTCAGTCACGAATCTCCACTACGACAACATGCTGGATGCCCAGATTGATGCCGTTTATTCTGCCATCAAGGCGATGGGGTATTCAGACATCGAGGTCCGAATATCCGAGACCGGCTGGCCTTCGAAAGGGGATGCAAACGAGGCCGGCGCCACGCCGGAAAATGCTGGTATTTACAATGCTAATCTGTTGAGGAAAATTGAAGAGAATCAAGGGACGCCGGCGATGCCTAAAGTTCCGGTCGACATTTACGTTTTTGCACTTTTTAACGAGGATTTGAAGCCCGGTCCTACGTCGGAGAGGAACTACGGACTATATTATCCGGATGGTACTCCGGTTTATGATATCGGATTCCAGGGTAATCCTCCTGGACGATATATTTATATTAATTTGATATCTAAGCCATGTCCATCTTCAATTTTCTGA

Protein Analysis

372

Amino Acids

40.62

Weight (kDa)

4.54

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 30 - 348 1.8e-93 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 695, 785
AatII GACGTC 1 cut(s) 228
AccB1I GGYRCC 1 cut(s) 839
AccI GTMKAC 3 cut(s) 228, 426, 933
AccII CGCG 5 cut(s) 133, 171, 432, 479, 662
AccIII TCCGGA 1 cut(s) 1012
AciI CCGC 5 cut(s) 169, 375, 430, 477, 521
AclWI GGATC 2 cut(s) 185, 556
AcoI YGGCCR 1 cut(s) 138
AcvI CACGTG 1 cut(s) 345
AcyI GRCGYC 4 cut(s) 186, 225, 840, 908
AfaI GTAC 4 cut(s) 257, 401, 659, 1021
AfiI CCNNNNNNNGG 8 cut(s) 297, 393, 409, 517, 521, 566, 680, 818
AgsI TTSAA 4 cut(s) 60, 893, 970, 1107
AjnI CCWGG 3 cut(s) 296, 1044, 1057
AjuI GAANNNNNNNTTGG 2 cut(s) 631, 663
AluBI AGCT 3 cut(s) 84, 391, 467
AluI AGCT 3 cut(s) 84, 391, 467
Alw26I GTCTC 1 cut(s) 794
AlwI GGATC 2 cut(s) 185, 556
AlwNI CAGNNNCTG 1 cut(s) 79
Aor13HI TCCGGA 1 cut(s) 1012
AoxI GGCC 6 cut(s) 138, 241, 448, 630, 809, 834
ApeKI GCWGC 1 cut(s) 316
AseI ATTAAT 1 cut(s) 1077
AspLEI GCGC 4 cut(s) 434, 481, 664, 842
AspS9I GGNCC 2 cut(s) 787, 977
AsuC2I CCSGG 2 cut(s) 410, 975
AsuII TTCGAA 1 cut(s) 815
AvaII GGWCC 2 cut(s) 787, 977
BaeI ACNNNNGTAYC 2 cut(s) 1011, 1044
BanI GGYRCC 1 cut(s) 839
BbrPI CACGTG 1 cut(s) 345
BbvI GCAGC 1 cut(s) 328
BccI CCATC 5 cut(s) 130, 760, 764, 1010, 1108
BceAI ACGGC 2 cut(s) 125, 728
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BciT130I CCWGG 3 cut(s) 298, 1046, 1059
BcnI CCSGG 2 cut(s) 410, 975
BcoDI GTCTC 1 cut(s) 794
BfoI RGCGCY 1 cut(s) 843
BglI GCCNNNNNGGC 1 cut(s) 761
BglII AGATCT 1 cut(s) 538
BisI GCNGC 3 cut(s) 169, 317, 376
BlsI GCNGC 3 cut(s) 170, 318, 377
BmcAI AGTACT 1 cut(s) 257
Bme1390I CCNGG 5 cut(s) 298, 410, 975, 1046, 1059
Bme18I GGWCC 2 cut(s) 787, 977
BmgT120I GGNCC 2 cut(s) 787, 977
BmiI GGNNCC 1 cut(s) 841
BmrFI CCNGG 5 cut(s) 298, 410, 975, 1046, 1059
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 5 cut(s) 357, 718, 730, 814, 906
BmuI ACTGGG 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 134
Bpu10I CCTNAGC 1 cut(s) 80
Bpu14I TTCGAA 1 cut(s) 815
BpuMI CCSGG 2 cut(s) 410, 975
BsaAI YACGTR 1 cut(s) 345
BsaHI GRCGYC 4 cut(s) 186, 225, 840, 908
BsaI GGTCTC 1 cut(s) 794
BsaJI CCNNGG 6 cut(s) 43, 244, 370, 445, 565, 1045
BsaWI WCCGGW 3 cut(s) 928, 1012, 1024
Bsc4I CCNNNNNNNGG 8 cut(s) 297, 393, 409, 517, 521, 566, 680, 818
Bse118I RCCGGY 3 cut(s) 803, 836, 910
Bse1I ACTGG 3 cut(s) 151, 292, 633
Bse3DI GCAATG 1 cut(s) 420
BseAI TCCGGA 1 cut(s) 1012
BseBI CCWGG 3 cut(s) 298, 1046, 1059
BseDI CCNNGG 6 cut(s) 43, 244, 370, 445, 565, 1045
BseGI GGATG 3 cut(s) 733, 829, 1021
BseLI CCNNNNNNNGG 8 cut(s) 297, 393, 409, 517, 521, 566, 680, 818
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 2 cut(s) 71, 560
BseNI ACTGG 3 cut(s) 151, 292, 633
BseRI GAGGAG 2 cut(s) 137, 395
BseXI GCAGC 1 cut(s) 328
BseYI CCCAGC 1 cut(s) 387
BsgI GTGCAG 1 cut(s) 335
Bsh1236I CGCG 5 cut(s) 133, 171, 432, 479, 662
Bsh1285I CGRYCG 1 cut(s) 933
BshFI GGCC 6 cut(s) 140, 243, 450, 632, 811, 836
BshNI GGYRCC 1 cut(s) 839
BsiEI CGRYCG 1 cut(s) 933
BslFI GGGAC 2 cut(s) 139, 919
BslI CCNNNNNNNGG 8 cut(s) 297, 393, 409, 517, 521, 566, 680, 818
BsmAI GTCTC 1 cut(s) 794
BsmFI GGGAC 2 cut(s) 139, 919
BsnI GGCC 6 cut(s) 140, 243, 450, 632, 811, 836
Bso31I GGTCTC 1 cut(s) 794
Bsp119I TTCGAA 1 cut(s) 815
Bsp13I TCCGGA 1 cut(s) 1012
Bsp143I GATC 3 cut(s) 190, 538, 561
Bsp68I TCGCGA 1 cut(s) 133
BspACI CCGC 5 cut(s) 169, 375, 430, 477, 521
BspANI GGCC 6 cut(s) 140, 243, 450, 632, 811, 836
BspCNI CTCAG 2 cut(s) 72, 559
BspEI TCCGGA 1 cut(s) 1012
BspFNI CGCG 5 cut(s) 133, 171, 432, 479, 662
BspLI GGNNCC 1 cut(s) 841
BspPI GGATC 2 cut(s) 185, 556
BspQI GCTCTTC 1 cut(s) 44
BspT104I TTCGAA 1 cut(s) 815
BspT107I GGYRCC 1 cut(s) 839
BspTNI GGTCTC 1 cut(s) 794
BsrDI GCAATG 1 cut(s) 420
BsrFI RCCGGY 3 cut(s) 803, 836, 910
BsrI ACTGG 3 cut(s) 151, 292, 633
BssAI RCCGGY 3 cut(s) 803, 836, 910
BssECI CCNNGG 6 cut(s) 43, 244, 370, 445, 565, 1045
BssMI GATC 3 cut(s) 190, 538, 561
BssNI GRCGYC 4 cut(s) 186, 225, 840, 908
Bst2UI CCWGG 3 cut(s) 298, 1046, 1059
Bst4CI ACNGT 2 cut(s) 16, 516
Bst6I CTCTTC 2 cut(s) 44, 888
BstACI GRCGYC 4 cut(s) 186, 225, 840, 908
BstAPI GCANNNNNTGC 1 cut(s) 313
BstBAI YACGTR 1 cut(s) 345
BstBI TTCGAA 1 cut(s) 815
BstC8I GCNNGC 3 cut(s) 809, 838, 912
BstDEI CTNAG 3 cut(s) 80, 546, 1089
BstENI CCTNNNNNAGG 1 cut(s) 816
BstF5I GGATG 3 cut(s) 733, 829, 1021
BstFNI CGCG 5 cut(s) 133, 171, 432, 479, 662
BstH2I RGCGCY 1 cut(s) 843
BstHHI GCGC 4 cut(s) 434, 481, 664, 842
BstKTI GATC 3 cut(s) 193, 541, 564
BstMAI GTCTC 1 cut(s) 794
BstMBI GATC 3 cut(s) 190, 538, 561
BstMCI CGRYCG 1 cut(s) 933
BstMWI GCNNNNNNNGC 7 cut(s) 313, 440, 629, 670, 761, 833, 916
BstNI CCWGG 3 cut(s) 298, 1046, 1059
BstNSI RCATGY 2 cut(s) 271, 724
BstSCI CCNGG 5 cut(s) 296, 408, 973, 1044, 1057
BstUI CGCG 5 cut(s) 133, 171, 432, 479, 662
BstV1I GCAGC 1 cut(s) 328
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 6 cut(s) 140, 243, 450, 632, 811, 836
BtgZI GCGATG 2 cut(s) 779, 929
BtsCI GGATG 3 cut(s) 733, 829, 1021
BtsIMutI CAGTG 1 cut(s) 12
BtuMI TCGCGA 1 cut(s) 133
Cac8I GCNNGC 3 cut(s) 809, 838, 912
CaiI CAGNNNCTG 1 cut(s) 79
CfoI GCGC 4 cut(s) 434, 481, 664, 842
Cfr10I RCCGGY 3 cut(s) 803, 836, 910
Cfr13I GGNCC 2 cut(s) 787, 977
CseI GACGC 3 cut(s) 160, 194, 916
Csp6I GTAC 4 cut(s) 256, 400, 658, 1020
CviAII CATG 4 cut(s) 268, 685, 721, 1095
CviQI GTAC 4 cut(s) 256, 400, 658, 1020
DdeI CTNAG 3 cut(s) 80, 546, 1089
DinI GGCGCC 1 cut(s) 841
DpnI GATC 3 cut(s) 192, 540, 563
DpnII GATC 3 cut(s) 190, 538, 561
DrdI GACNNNNNNGTC 2 cut(s) 695, 785
DseDI GACNNNNNNGTC 2 cut(s) 695, 785
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 2 cut(s) 44, 888
EarI CTCTTC 2 cut(s) 44, 888
Eco31I GGTCTC 1 cut(s) 794
Eco32I GATATC 2 cut(s) 1036, 1086
Eco47I GGWCC 2 cut(s) 787, 977
Eco72I CACGTG 1 cut(s) 345
EcoNI CCTNNNNNAGG 1 cut(s) 816
EcoRII CCWGG 3 cut(s) 296, 1044, 1057
EcoRV GATATC 2 cut(s) 1036, 1086
EgeI GGCGCC 1 cut(s) 841
EheI GGCGCC 1 cut(s) 841
FaeI CATG 4 cut(s) 271, 688, 724, 1098
FaqI GGGAC 2 cut(s) 139, 919
FatI CATG 4 cut(s) 267, 684, 720, 1094
FauI CCCGC 1 cut(s) 514
FblI GTMKAC 3 cut(s) 228, 426, 933
Fnu4HI GCNGC 3 cut(s) 169, 317, 376
FokI GGATG 3 cut(s) 740, 836, 1028
Fsp4HI GCNGC 3 cut(s) 169, 317, 376
GlaI GCGC 4 cut(s) 433, 480, 663, 841
GluI GCNGC 3 cut(s) 169, 317, 376
GsaI CCCAGC 1 cut(s) 391
GsuI CTGGAG 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 843
HaeIII GGCC 6 cut(s) 140, 243, 450, 632, 811, 836
HgaI GACGC 3 cut(s) 160, 194, 916
HhaI GCGC 4 cut(s) 434, 481, 664, 842
Hin1I GRCGYC 4 cut(s) 186, 225, 840, 908
Hin1II CATG 4 cut(s) 271, 688, 724, 1098
Hin6I GCGC 4 cut(s) 432, 479, 662, 840
HinP1I GCGC 4 cut(s) 432, 479, 662, 840
HincII GTYRAC 2 cut(s) 229, 934
HindII GTYRAC 2 cut(s) 229, 934
HinfI GANTC 7 cut(s) 56, 90, 301, 692, 703, 898, 1041
Hpy166II GTNNAC 4 cut(s) 229, 273, 427, 934
Hpy188III TCNNGA 4 cut(s) 73, 132, 700, 1013
Hpy8I GTNNAC 4 cut(s) 229, 273, 427, 934
Hpy99I CGWCG 7 cut(s) 133, 188, 227, 230, 443, 520, 988
HpyAV CCTTC 2 cut(s) 220, 822
HpyCH4III ACNGT 2 cut(s) 16, 516
HpyCH4IV ACGT 6 cut(s) 198, 225, 312, 344, 942, 983
HpyCH4V TGCA 6 cut(s) 262, 316, 348, 418, 827, 950
HpyF10VI GCNNNNNNNGC 7 cut(s) 313, 440, 629, 670, 761, 833, 916
HpyF3I CTNAG 3 cut(s) 80, 546, 1089
HpySE526I ACGT 6 cut(s) 198, 225, 312, 344, 942, 983
Hsp92I GRCGYC 4 cut(s) 186, 225, 840, 908
Hsp92II CATG 4 cut(s) 271, 688, 724, 1098
HspAI GCGC 4 cut(s) 432, 479, 662, 840
KasI GGCGCC 1 cut(s) 839
Kpn2I TCCGGA 1 cut(s) 1012
KroI GCCGGC 2 cut(s) 836, 910
KroNI GCCGGC 2 cut(s) 838, 912
Kzo9I GATC 3 cut(s) 190, 538, 561
LguI GCTCTTC 1 cut(s) 44
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 5 cut(s) 357, 718, 730, 814, 906
MaeII ACGT 6 cut(s) 198, 225, 312, 344, 942, 983
MaeIII GTNAC 2 cut(s) 469, 697
MalI GATC 3 cut(s) 192, 540, 563
MboI GATC 3 cut(s) 190, 538, 561
MboII GAAGA 3 cut(s) 31, 905, 1095
MflI RGATCY 1 cut(s) 538
MluCI AATT 6 cut(s) 27, 586, 676, 888, 1078, 1107
Mly113I GGCGCC 1 cut(s) 840
MmeI TCCRAC 6 cut(s) 33, 240, 246, 337, 556, 966
MreI CGCCGGCG 1 cut(s) 910
MroI TCCGGA 1 cut(s) 1012
MroNI GCCGGC 2 cut(s) 836, 910
MseI TTAA 3 cut(s) 585, 957, 1077
MspR9I CCNGG 5 cut(s) 298, 410, 975, 1046, 1059
MvaI CCWGG 3 cut(s) 298, 1046, 1059
MvnI CGCG 5 cut(s) 133, 171, 432, 479, 662
MwoI GCNNNNNNNGC 7 cut(s) 313, 440, 629, 670, 761, 833, 916
NaeI GCCGGC 2 cut(s) 838, 912
NarI GGCGCC 1 cut(s) 840
NciI CCSGG 2 cut(s) 410, 975
NdeII GATC 3 cut(s) 190, 538, 561
NgoMIV GCCGGC 2 cut(s) 836, 910
NlaIII CATG 4 cut(s) 271, 688, 724, 1098
NlaIV GGNNCC 1 cut(s) 841
NmeAIII GCCGAG 4 cut(s) 225, 351, 426, 546
NmuCI GTSAC 2 cut(s) 469, 697
NruI TCGCGA 1 cut(s) 133
NspI RCATGY 2 cut(s) 271, 724
NspV TTCGAA 1 cut(s) 815
PciSI GCTCTTC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 2 cut(s) 378, 939
PdiI GCCGGC 2 cut(s) 838, 912
PfeI GAWTC 7 cut(s) 56, 90, 301, 692, 703, 898, 1041
PfoI TCCNGGA 2 cut(s) 296, 1057
PkrI GCNGC 3 cut(s) 170, 318, 377
PluTI GGCGCC 1 cut(s) 843
PmaCI CACGTG 1 cut(s) 345
PmlI CACGTG 1 cut(s) 345
Ppu21I YACGTR 1 cut(s) 345
PshBI ATTAAT 1 cut(s) 1077
Psp6I CCWGG 3 cut(s) 296, 1044, 1057
PspCI CACGTG 1 cut(s) 345
PspFI CCCAGC 1 cut(s) 387
PspGI CCWGG 3 cut(s) 296, 1044, 1057
PspN4I GGNNCC 1 cut(s) 841
PspPI GGNCC 2 cut(s) 787, 977
PsrI GAACNNNNNNTAC 2 cut(s) 650, 682
PstNI CAGNNNCTG 1 cut(s) 79
PsuI RGATCY 1 cut(s) 538
RruI TCGCGA 1 cut(s) 133
RsaI GTAC 4 cut(s) 257, 401, 659, 1021
RsaNI GTAC 4 cut(s) 256, 400, 658, 1020
SalI GTCGAC 2 cut(s) 227, 932
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 3 cut(s) 585, 957, 1077
SatI GCNGC 3 cut(s) 169, 317, 376
Sau3AI GATC 3 cut(s) 190, 538, 561
Sau96I GGNCC 2 cut(s) 787, 977
ScaI AGTACT 1 cut(s) 257
ScrFI CCNGG 5 cut(s) 298, 410, 975, 1046, 1059
SfaNI GCATC 5 cut(s) 357, 718, 730, 814, 906
SfoI GGCGCC 1 cut(s) 841
SfuI TTCGAA 1 cut(s) 815
SgrAI CRCCGGYG 1 cut(s) 910
SinI GGWCC 2 cut(s) 787, 977
Sse9I AATT 6 cut(s) 27, 586, 676, 888, 1078, 1107
SsiI CCGC 5 cut(s) 169, 375, 430, 477, 521
SspDI GGCGCC 1 cut(s) 839
StyD4I CCNGG 5 cut(s) 296, 408, 973, 1044, 1057
TaaI ACNGT 2 cut(s) 16, 516
TaiI ACGT 6 cut(s) 201, 228, 315, 347, 945, 986
TaqI TCGA 4 cut(s) 228, 783, 815, 933
TaqII GACCGA 1 cut(s) 35
TasI AATT 6 cut(s) 27, 586, 676, 888, 1078, 1107
TatI WGTACW 1 cut(s) 255
TauI GCSGC 2 cut(s) 171, 378
TfiI GAWTC 7 cut(s) 56, 90, 301, 692, 703, 898, 1041
Tru1I TTAA 3 cut(s) 585, 957, 1077
Tru9I TTAA 3 cut(s) 585, 957, 1077
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 2 cut(s) 469, 697
TseI GCWGC 1 cut(s) 316
Tsp45I GTSAC 2 cut(s) 469, 697
TspDTI ATGAA 1 cut(s) 223
TspGWI ACGGA 3 cut(s) 117, 412, 1014
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 2 cut(s) 787, 977
VspI ATTAAT 1 cut(s) 1077
XagI CCTNNNNNAGG 1 cut(s) 816
XceI RCATGY 2 cut(s) 271, 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 763
XmiI GTMKAC 3 cut(s) 228, 426, 933
ZraI GACGTC 1 cut(s) 226
ZrmI AGTACT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.