RLG00000034292

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0007295
Physical Location & Seq
Forward (+)
40145766 .. 40147430
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034292

Sequence Viewer

Length: 1155 bp
ATGGCAAGCTTCACCAACACTGCCGTATTCAGAATCATTCTGGTCCTTGTTAGTCTCTCAGATTCAGCTCTGTTCCATGTGCAGTGCTTAAGCTTCGGCATCAACTACGGTCAAATCGCCGACAACCTTCCTTCTCCTTCCCGAGTATTGGTGCTCCTCCAGTCCCTCAACGTCAGCAGAGTCAAACTCTACGACGCCGACCCCAACGTCCTCCAAGCCTTCTCCAACTCCGAGGTCGACTTCATCATCGGACTAGGAAACGAGTTCCTACCCAACATGACTGACCCTCTCAAGGCCCAGAGTTGGATCCAACAACACGTCACCCCTCACCTCCCGCAGACCAAAATCTCCTCCATCCTCGTAGGCAACGAAGTCCTCAGCGGAAACGACACACAGCTCATGCCGTACCTCCTCACCGCAATGCAATCCGTCTACGCCGCCCTCGTCAACCTCGGACTTTCCAAAACCGTCGCCGTCACCACCGCGCATTCCCTTACCATTTTGGGGAACTCCTACCCGCCGTCGGCCGGGACTTTCCGGGAAGACCTCGCCCAATACATCCATCCACTTCTAGACTTCCACTCGCAAATCAATGCCCCGTTTCTCATAAACGCGTACCCTTATTTTGCTTACAAGGGCAGTCCTAATGAAGTTCCCTTAGAGTACGTGCTTTTTCAGCCAAACTCCGGCATGAATGATTCCGGAACCAATCTTCACTACGATAACATGCTTGATGCTCAGATTGATGCTGTCTATGCCGCAATGAAAGTGATGGGGCACATTGATATCGAGGTTCGGATATCGGAAACCGGCTGGCCGTCCAAGGGGGACGAGAACGAGGCGGGGGCCACGCCGGAGAATGCCGGGATTTACAATGGGAATTTGCTCAGGAAAATCGAGGAGAAGAAAGGTACCCCGGCCAAGCCTGACGTTCCCATTGATACGTATGTGTTTGCGCTGTTTAATGAGAACTTGAAGACCGGTCCGGCGTCCGAGAGGAACTACGGGCTGTTTTATCCCGATGGGACTCCGGTGTATGATATCGGAGCAGATGGTTATCTTCCCCAGTTAACTTTTTCTTCAGCTCATGATATTAATGCTTTGTCGATCTTCAATTTTCTGATATTTCTTATACTGTACTTATTATGGAAATAG

Protein Analysis

385

Amino Acids

42.28

Weight (kDa)

4.82

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 33 - 348 1.1e-86 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
Acc65I GGTACC 1 cut(s) 911
AccB1I GGYRCC 1 cut(s) 911
AccI GTMKAC 2 cut(s) 237, 432
AccII CGCG 2 cut(s) 485, 614
AccIII TCCGGA 1 cut(s) 701
AciI CCGC 8 cut(s) 335, 381, 417, 438, 483, 518, 759, 842
AclWI GGATC 2 cut(s) 301, 314
AcoI YGGCCR 3 cut(s) 525, 815, 918
AcsI RAATTY 1 cut(s) 880
AcuI CTGAAG 1 cut(s) 1065
AcyI GRCGYC 2 cut(s) 195, 989
AfaI GTAC 5 cut(s) 407, 617, 665, 913, 1139
AfiI CCNNNNNNNGG 8 cut(s) 148, 292, 303, 504, 523, 527, 686, 824
AflII CTTAAG 1 cut(s) 88
AflIII ACRYGT 2 cut(s) 316, 612
AgeI ACCGGT 1 cut(s) 980
AgsI TTSAA 2 cut(s) 976, 1114
AjiI CACGTC 1 cut(s) 319
AluBI AGCT 5 cut(s) 9, 68, 93, 397, 1085
AluI AGCT 5 cut(s) 9, 68, 93, 397, 1085
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 2 cut(s) 301, 314
Ama87I CYCGRG 1 cut(s) 141
Aor13HI TCCGGA 1 cut(s) 701
AoxI GGCC 5 cut(s) 294, 525, 815, 846, 918
ApoI RAATTY 1 cut(s) 880
AseI ATTAAT 1 cut(s) 1095
AsiGI ACCGGT 1 cut(s) 980
Asp718I GGTACC 1 cut(s) 911
AspLEI GCGC 2 cut(s) 487, 958
AspS9I GGNCC 4 cut(s) 43, 295, 846, 983
AsuC2I CCSGG 4 cut(s) 529, 539, 865, 917
AsuHPI GGTGA 5 cut(s) 4, 313, 320, 406, 469
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 2 cut(s) 43, 983
BaeGI GKGCMC 1 cut(s) 780
BaeI ACNNNNGTAYC 2 cut(s) 933, 966
BamHI GGATCC 1 cut(s) 306
BanI GGYRCC 1 cut(s) 911
BbsI GAAGAC 2 cut(s) 549, 983
Bbv12I GWGCWC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 377
BccI CCATC 5 cut(s) 362, 570, 766, 1016, 1046
BceAI ACGGC 5 cut(s) 8, 388, 458, 505, 802
BcnI CCSGG 4 cut(s) 529, 539, 865, 917
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 2 cut(s) 254, 572
BfrI CTTAAG 1 cut(s) 88
BisI GCNGC 2 cut(s) 438, 759
BlsI GCNGC 2 cut(s) 439, 760
Bme1390I CCNGG 4 cut(s) 529, 539, 865, 917
Bme18I GGWCC 2 cut(s) 43, 983
BmeT110I CYCGRG 1 cut(s) 141
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 4 cut(s) 43, 295, 846, 983
BmiI GGNNCC 4 cut(s) 308, 706, 847, 913
BmrFI CCNGG 4 cut(s) 529, 539, 865, 917
BmrI ACTGGG 1 cut(s) 1060
BmsI GCATC 3 cut(s) 108, 724, 736
BmuI ACTGGG 1 cut(s) 1060
BpiI GAAGAC 2 cut(s) 549, 983
BplI GAGNNNNNCTC 2 cut(s) 171, 203
BpmI CTGGAG 1 cut(s) 143
Bpu10I CCTNAGC 2 cut(s) 377, 887
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 4 cut(s) 529, 539, 865, 917
BsaAI YACGTR 2 cut(s) 667, 945
BsaBI GATNNNNATC 1 cut(s) 1056
BsaHI GRCGYC 2 cut(s) 195, 989
BsaJI CCNNGG 4 cut(s) 231, 451, 822, 915
BsaWI WCCGGW 3 cut(s) 701, 980, 1030
Bsc4I CCNNNNNNNGG 8 cut(s) 148, 292, 303, 504, 523, 527, 686, 824
Bse118I RCCGGY 2 cut(s) 809, 980
Bse1I ACTGG 2 cut(s) 160, 1066
Bse3DI GCAATG 2 cut(s) 426, 768
Bse8I GATNNNNATC 1 cut(s) 1056
BseAI TCCGGA 1 cut(s) 701
BseDI CCNNGG 4 cut(s) 231, 451, 822, 915
BseGI GGATG 3 cut(s) 354, 558, 562
BseJI GATNNNNATC 1 cut(s) 1056
BseLI CCNNNNNNNGG 8 cut(s) 148, 292, 303, 504, 523, 527, 686, 824
BseMI GCAATG 2 cut(s) 426, 768
BseMII CTCAG 4 cut(s) 72, 391, 752, 901
BseNI ACTGG 2 cut(s) 160, 1066
BseRI GAGGAG 4 cut(s) 146, 340, 401, 914
BseSI GKGCMC 1 cut(s) 780
BseX3I CGGCCG 1 cut(s) 525
BsgI GTGCAG 1 cut(s) 101
Bsh1236I CGCG 2 cut(s) 485, 614
Bsh1285I CGRYCG 1 cut(s) 528
BshFI GGCC 5 cut(s) 296, 527, 817, 848, 920
BshNI GGYRCC 1 cut(s) 911
BshTI ACCGGT 1 cut(s) 980
BsiEI CGRYCG 1 cut(s) 528
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 141
BslFI GGGAC 4 cut(s) 148, 544, 842, 1039
BslI CCNNNNNNNGG 8 cut(s) 148, 292, 303, 504, 523, 527, 686, 824
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 4 cut(s) 148, 544, 842, 1039
BsmI GAATGC 2 cut(s) 487, 865
BsnI GGCC 5 cut(s) 296, 527, 817, 848, 920
BsoBI CYCGRG 1 cut(s) 141
Bsp1286I GDGCHC 2 cut(s) 156, 780
Bsp13I TCCGGA 1 cut(s) 701
Bsp143I GATC 2 cut(s) 306, 1107
BspACI CCGC 8 cut(s) 335, 381, 417, 438, 483, 518, 759, 842
BspANI GGCC 5 cut(s) 296, 527, 817, 848, 920
BspCNI CTCAG 4 cut(s) 71, 390, 751, 900
BspEI TCCGGA 1 cut(s) 701
BspFNI CGCG 2 cut(s) 485, 614
BspHI TCATGA 1 cut(s) 1087
BspLI GGNNCC 4 cut(s) 308, 706, 847, 913
BspPI GGATC 2 cut(s) 301, 314
BspT107I GGYRCC 1 cut(s) 911
BspTI CTTAAG 1 cut(s) 88
BsrDI GCAATG 2 cut(s) 426, 768
BsrFI RCCGGY 2 cut(s) 809, 980
BsrI ACTGG 2 cut(s) 160, 1066
BssAI RCCGGY 2 cut(s) 809, 980
BssECI CCNNGG 4 cut(s) 231, 451, 822, 915
BssMI GATC 2 cut(s) 306, 1107
BssNI GRCGYC 2 cut(s) 195, 989
BssT1I CCWWGG 1 cut(s) 822
Bst4CI ACNGT 3 cut(s) 110, 469, 1137
BstACI GRCGYC 2 cut(s) 195, 989
BstAFI CTTAAG 1 cut(s) 88
BstBAI YACGTR 2 cut(s) 667, 945
BstC8I GCNNGC 2 cut(s) 7, 815
BstDEI CTNAG 5 cut(s) 58, 377, 658, 738, 887
BstF5I GGATG 3 cut(s) 354, 558, 562
BstFNI CGCG 2 cut(s) 485, 614
BstHHI GCGC 2 cut(s) 487, 958
BstKTI GATC 2 cut(s) 309, 1110
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 2 cut(s) 306, 1107
BstMCI CGRYCG 1 cut(s) 528
BstMWI GCNNNNNNNGC 2 cut(s) 676, 755
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 4 cut(s) 527, 537, 863, 915
BstSLI GKGCMC 1 cut(s) 780
BstSNI TACGTA 1 cut(s) 945
BstUI CGCG 2 cut(s) 485, 614
BstV2I GAAGAC 2 cut(s) 549, 983
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BstZI CGGCCG 1 cut(s) 525
BsuRI GGCC 5 cut(s) 296, 527, 817, 848, 920
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 3 cut(s) 354, 558, 562
BtsI GCAGTG 2 cut(s) 18, 89
BtsIMutI CAGTG 2 cut(s) 18, 89
Cac8I GCNNGC 2 cut(s) 7, 815
CciI TCATGA 1 cut(s) 1087
CfoI GCGC 2 cut(s) 487, 958
Cfr10I RCCGGY 2 cut(s) 809, 980
Cfr13I GGNCC 4 cut(s) 43, 295, 846, 983
CpoI CGGWCCG 1 cut(s) 983
CseI GACGC 2 cut(s) 203, 978
Csp6I GTAC 5 cut(s) 406, 616, 664, 912, 1138
CspAI ACCGGT 1 cut(s) 980
CspI CGGWCCG 1 cut(s) 983
CviAII CATG 6 cut(s) 77, 277, 400, 691, 727, 1088
CviQI GTAC 5 cut(s) 406, 616, 664, 912, 1138
DdeI CTNAG 5 cut(s) 58, 377, 658, 738, 887
DpnI GATC 2 cut(s) 308, 1109
DpnII GATC 2 cut(s) 306, 1107
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
EaeI YGGCCR 3 cut(s) 525, 815, 918
EagI CGGCCG 1 cut(s) 525
EclXI CGGCCG 1 cut(s) 525
Eco105I TACGTA 1 cut(s) 945
Eco130I CCWWGG 1 cut(s) 822
Eco32I GATATC 3 cut(s) 787, 801, 1042
Eco47I GGWCC 2 cut(s) 43, 983
Eco52I CGGCCG 1 cut(s) 525
Eco57I CTGAAG 1 cut(s) 1065
Eco88I CYCGRG 1 cut(s) 141
EcoRV GATATC 3 cut(s) 787, 801, 1042
EcoT14I CCWWGG 1 cut(s) 822
ErhI CCWWGG 1 cut(s) 822
FaeI CATG 6 cut(s) 80, 280, 403, 694, 730, 1091
FaqI GGGAC 4 cut(s) 148, 544, 842, 1039
FatI CATG 6 cut(s) 76, 276, 399, 690, 726, 1087
FauI CCCGC 3 cut(s) 342, 525, 835
FblI GTMKAC 2 cut(s) 237, 432
Fnu4HI GCNGC 2 cut(s) 438, 759
FokI GGATG 3 cut(s) 341, 545, 549
Fsp4HI GCNGC 2 cut(s) 438, 759
FspBI CTAG 2 cut(s) 254, 572
GlaI GCGC 2 cut(s) 486, 957
GluI GCNGC 2 cut(s) 438, 759
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 5 cut(s) 296, 527, 817, 848, 920
HgaI GACGC 2 cut(s) 203, 978
HhaI GCGC 2 cut(s) 487, 958
Hin1I GRCGYC 2 cut(s) 195, 989
Hin1II CATG 6 cut(s) 80, 280, 403, 694, 730, 1091
Hin6I GCGC 2 cut(s) 485, 956
HinP1I GCGC 2 cut(s) 485, 956
HincII GTYRAC 3 cut(s) 238, 448, 1071
HindII GTYRAC 3 cut(s) 238, 448, 1071
HindIII AAGCTT 2 cut(s) 7, 91
HinfI GANTC 5 cut(s) 33, 62, 180, 698, 1027
HpaI GTTAAC 1 cut(s) 1071
HphI GGTGA 5 cut(s) 4, 313, 320, 406, 469
Hpy166II GTNNAC 4 cut(s) 238, 433, 448, 1071
Hpy188III TCNNGA 6 cut(s) 141, 572, 702, 889, 1019, 1088
Hpy8I GTNNAC 4 cut(s) 238, 433, 448, 1071
Hpy99I CGWCG 3 cut(s) 197, 473, 526
HpyAV CCTTC 4 cut(s) 137, 141, 147, 229
HpyCH4III ACNGT 3 cut(s) 110, 469, 1137
HpyCH4IV ACGT 6 cut(s) 171, 207, 318, 666, 930, 944
HpyCH4V TGCA 2 cut(s) 82, 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 676, 755
HpyF3I CTNAG 5 cut(s) 58, 377, 658, 738, 887
HpySE526I ACGT 6 cut(s) 171, 207, 318, 666, 930, 944
Hsp92I GRCGYC 2 cut(s) 195, 989
Hsp92II CATG 6 cut(s) 80, 280, 403, 694, 730, 1091
HspAI GCGC 2 cut(s) 485, 956
Kpn2I TCCGGA 1 cut(s) 701
KpnI GGTACC 1 cut(s) 915
KspAI GTTAAC 1 cut(s) 1071
Kzo9I GATC 2 cut(s) 306, 1107
LmnI GCTCC 2 cut(s) 159, 1046
LweI GCATC 3 cut(s) 108, 724, 736
MaeI CTAG 2 cut(s) 254, 572
MaeII ACGT 6 cut(s) 171, 207, 318, 666, 930, 944
MaeIII GTNAC 2 cut(s) 319, 475
MalI GATC 2 cut(s) 308, 1109
MboI GATC 2 cut(s) 306, 1107
MboII GAAGA 7 cut(s) 554, 704, 916, 988, 1052, 1071, 1102
MflI RGATCY 1 cut(s) 306
MhlI GDGCHC 2 cut(s) 156, 780
MluCI AATT 2 cut(s) 880, 1114
MluI ACGCGT 1 cut(s) 612
MlyI GAGTC 2 cut(s) 189, 1021
MmeI TCCRAC 3 cut(s) 249, 284, 334
MroI TCCGGA 1 cut(s) 701
MseI TTAA 4 cut(s) 89, 963, 1070, 1095
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 381
MspCI CTTAAG 1 cut(s) 88
MspR9I CCNGG 4 cut(s) 529, 539, 865, 917
Mva1269I GAATGC 2 cut(s) 487, 865
MvnI CGCG 2 cut(s) 485, 614
MwoI GCNNNNNNNGC 2 cut(s) 676, 755
NciI CCSGG 4 cut(s) 529, 539, 865, 917
NdeII GATC 2 cut(s) 306, 1107
NlaIII CATG 6 cut(s) 80, 280, 403, 694, 730, 1091
NlaIV GGNNCC 4 cut(s) 308, 706, 847, 913
NmuCI GTSAC 2 cut(s) 319, 475
NspI RCATGY 1 cut(s) 730
PagI TCATGA 1 cut(s) 1087
PcsI WCGNNNNNNNCGW 2 cut(s) 366, 441
PctI GAATGC 2 cut(s) 487, 865
PfeI GAWTC 3 cut(s) 33, 62, 698
PfoI TCCNGGA 1 cut(s) 537
PinAI ACCGGT 1 cut(s) 980
PkrI GCNGC 2 cut(s) 439, 760
PleI GAGTC 2 cut(s) 188, 1021
PpsI GAGTC 2 cut(s) 188, 1021
Ppu21I YACGTR 2 cut(s) 667, 945
PshBI ATTAAT 1 cut(s) 1095
PspN4I GGNNCC 4 cut(s) 308, 706, 847, 913
PspPI GGNCC 4 cut(s) 43, 295, 846, 983
PsuI RGATCY 1 cut(s) 306
RsaI GTAC 5 cut(s) 407, 617, 665, 913, 1139
RsaNI GTAC 5 cut(s) 406, 616, 664, 912, 1138
RseI CAYNNNNRTG 1 cut(s) 419
Rsr2I CGGWCCG 1 cut(s) 983
RsrII CGGWCCG 1 cut(s) 983
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 4 cut(s) 89, 963, 1070, 1095
SatI GCNGC 2 cut(s) 438, 759
Sau3AI GATC 2 cut(s) 306, 1107
Sau96I GGNCC 4 cut(s) 43, 295, 846, 983
SchI GAGTC 2 cut(s) 189, 1021
ScrFI CCNGG 4 cut(s) 529, 539, 865, 917
SduI GDGCHC 2 cut(s) 156, 780
SfaNI GCATC 3 cut(s) 108, 724, 736
SinI GGWCC 2 cut(s) 43, 983
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 2 cut(s) 88, 290
SmoI CTYRAG 2 cut(s) 88, 290
SnaBI TACGTA 1 cut(s) 945
Sse9I AATT 2 cut(s) 880, 1114
SsiI CCGC 8 cut(s) 335, 381, 417, 438, 483, 518, 759, 842
SspMI CTAG 2 cut(s) 254, 572
StyD4I CCNGG 4 cut(s) 527, 537, 863, 915
StyI CCWWGG 1 cut(s) 822
TaaI ACNGT 3 cut(s) 110, 469, 1137
TaiI ACGT 6 cut(s) 174, 210, 321, 669, 933, 947
TaqI TCGA 4 cut(s) 237, 789, 897, 1106
TasI AATT 2 cut(s) 880, 1114
TatI WGTACW 1 cut(s) 1137
TauI GCSGC 2 cut(s) 440, 761
TfiI GAWTC 3 cut(s) 33, 62, 698
Tru1I TTAA 4 cut(s) 89, 963, 1070, 1095
Tru9I TTAA 4 cut(s) 89, 963, 1070, 1095
TscAI CASTG 2 cut(s) 25, 89
TseFI GTSAC 2 cut(s) 319, 475
Tsp45I GTSAC 2 cut(s) 319, 475
TspDTI ATGAA 4 cut(s) 232, 663, 707, 779
TspGWI ACGGA 1 cut(s) 418
TspRI CASTG 2 cut(s) 25, 89
Vha464I CTTAAG 1 cut(s) 88
VpaK11BI GGWCC 2 cut(s) 43, 983
VspI ATTAAT 1 cut(s) 1095
XapI RAATTY 1 cut(s) 880
XbaI TCTAGA 1 cut(s) 571
XceI RCATGY 1 cut(s) 730
XmiI GTMKAC 2 cut(s) 237, 432
XspI CTAG 2 cut(s) 254, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.