Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008701

Physical Location & Seq

Genomic Coordinates Reverse (-)

19062052 .. 19066731

Gene Structure 4680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26180.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGATCTCTCTCTCCCTAAATTCCGATCCCGTCTCCTCGCCTGGCTCTGCAGATCTCGACCCGGCCCAATGATATTTATGAAGCGTTTTCCATACAAAGATATAAAGAGAGCTACAGATGGTTTTCATAGGATCATGTATACCAACTCTCACATAGTTGTCTACAAGGCCAGATATCAAGATGGCGGGGTTGCTTTGGTAAAAGAAATTAGAGATTATAGTCAGGCAGAACATGTCTTCTACAGGGAAATGCAACTCTTGGGGCGTCTGCATCATCGGCATCTTCTTGCTCTCAGGGGTTTCTCTATCGGAAATAAACGGTTGTTAGTGTTTGACAACATAGAAAGAGGGAGTTTGAAGGAACATCTTAATGATCCCCTTAGGACTCCCTTAAATTGGAGGACAAGACTACAAATAGCTGTTGGTGTGGTGGCAGCATTGTTTCTGATGCAGGAGTATCTGCTTCTTTTCAATGAACCCCCAATGTTTCATGTCTCCATTAGCTCAAGTAACATCATGCTAGATGAAAACTTTAATGCAAAGCTTTCAGACATTGGCCTTCAAAGTTCCGGTGAAAATTATGTCACAGTGCCTCATAACTCATGTCCAAAAGTCGTGCAGATTGCATGGGTCAGGAATGTGGCAACATTATGTTCCAACTTGGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

224

Amino Acids

25.76

Weight (kDa)

9.75

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	53 - 188	5.2e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	56 - 206	1.4e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22050 AT5G22050
fragaria_vesca	FvH4_3g26180 FvH4_3g26180 FvH4_3g26180 FvH4_3g26180 FvH4_3g26180
malus_domestica	MD03G1159200.v1.1
prunus_persica	Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1
pyrus_communis	pycom03g11150
rosa_chinensis	RchiOBHm_Chr5g0049031
rosa_laevigata	RLG00000034585
rosa_multiflora	Rmu_sc0004522.1_g000006
rosa_roxburghii	Rroxscaffold_1G00032840
rosa_rugosa	Rorug05G0242400
rosa_samantha	Rh5AG322300 Rh5BG332500 Rh5CG357700 Rh5DG344200
rosa_wichuraiana	Rw5G030410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	140, 162
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	4 cut(s)	12, 21, 140, 368
AcsI	RAATTY	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	265
AfiI	CCNNNNNNNGG	2 cut(s)	396, 663
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	358, 472, 563
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	4 cut(s)	113, 419, 504, 544
AluI	AGCT	4 cut(s)	113, 419, 504, 544
Alw26I	GTCTC	2 cut(s)	38, 499
AlwI	GGATC	4 cut(s)	12, 21, 140, 368
AoxI	GGCC	3 cut(s)	64, 168, 556
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	584
AxyI	CCTNAGG	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	2 cut(s)	113, 176
BciT130I	CCWGG	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	38, 499
BfaI	CTAG	1 cut(s)	521
BfmI	CTRYAG	3 cut(s)	49, 114, 241
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
Bme1390I	CCNGG	2 cut(s)	43, 63
BmgT120I	GGNCC	1 cut(s)	65
BmrFI	CCNGG	2 cut(s)	43, 63
BmsI	GCATC	3 cut(s)	280, 289, 438
BpiI	GAAGAC	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	490
BpuMI	CCSGG	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	2 cut(s)	396, 663
Bse21I	CCTNAGG	1 cut(s)	380
BseBI	CCWGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	396, 663
BseMII	CTCAG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	446
BsgI	GTGCAG	1 cut(s)	638
BshFI	GGCC	3 cut(s)	66, 170, 558
BsiSI	CCGG	2 cut(s)	63, 570
BslI	CCNNNNNNNGG	2 cut(s)	396, 663
BsmAI	GTCTC	2 cut(s)	38, 499
BsmBI	CGTCTC	1 cut(s)	38
BsnI	GGCC	3 cut(s)	66, 170, 558
Bsp143I	GATC	5 cut(s)	4, 26, 53, 132, 373
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	3 cut(s)	66, 170, 558
BspCNI	CTCAG	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	53
BspPI	GGATC	4 cut(s)	12, 21, 140, 368
BssMI	GATC	5 cut(s)	4, 26, 53, 132, 373
BssNAI	GTATAC	1 cut(s)	141
BssNI	GRCGYC	1 cut(s)	265
Bst1107I	GTATAC	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	321, 589
BstACI	GRCGYC	1 cut(s)	265
BstDEI	CTNAG	2 cut(s)	293, 380
BstKTI	GATC	5 cut(s)	7, 29, 56, 135, 376
BstMAI	GTCTC	2 cut(s)	38, 499
BstMBI	GATC	5 cut(s)	4, 26, 53, 132, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	41, 61
BstSFI	CTRYAG	3 cut(s)	49, 114, 241
BstV1I	GCAGC	1 cut(s)	446
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	2 cut(s)	4, 53
BstYI	RGATCY	2 cut(s)	4, 53
BstZ17I	GTATAC	1 cut(s)	141
Bsu36I	CCTNAGG	1 cut(s)	380
BsuRI	GGCC	3 cut(s)	66, 170, 558
BtsIMutI	CAGTG	1 cut(s)	594
Cfr13I	GGNCC	1 cut(s)	65
CseI	GACGC	1 cut(s)	254
CviAII	CATG	6 cut(s)	136, 233, 491, 517, 603, 627
CviJI	RGCY	8 cut(s)	46, 66, 113, 170, 419, 504, 544, 558
CviKI_1	RGCY	8 cut(s)	46, 66, 113, 170, 419, 504, 544, 558
DdeI	CTNAG	2 cut(s)	293, 380
DpnI	GATC	5 cut(s)	6, 28, 55, 134, 375
DpnII	GATC	5 cut(s)	4, 26, 53, 132, 373
Eco32I	GATATC	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	41
EcoRV	GATATC	1 cut(s)	176
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	6 cut(s)	139, 236, 494, 520, 606, 630
FatI	CATG	6 cut(s)	135, 232, 490, 516, 602, 626
FauI	CCCGC	1 cut(s)	179
FblI	GTMKAC	2 cut(s)	140, 162
Fnu4HI	GCNGC	1 cut(s)	435
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	1 cut(s)	521
GluI	GCNGC	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	66, 170, 558
HapII	CCGG	2 cut(s)	63, 570
HgaI	GACGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	6 cut(s)	139, 236, 494, 520, 606, 630
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	1 cut(s)	385
HpaII	CCGG	2 cut(s)	63, 570
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	2 cut(s)	141, 163
Hpy188I	TCNGA	4 cut(s)	26, 311, 447, 550
Hpy188III	TCNNGA	3 cut(s)	57, 179, 634
Hpy8I	GTNNAC	2 cut(s)	141, 163
HpyAV	CCTTC	2 cut(s)	352, 569
HpyCH4III	ACNGT	2 cut(s)	321, 589
HpyCH4V	TGCA	7 cut(s)	51, 253, 271, 451, 539, 619, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	2 cut(s)	293, 380
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	6 cut(s)	139, 236, 494, 520, 606, 630
Kzo9I	GATC	5 cut(s)	4, 26, 53, 132, 373
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	3 cut(s)	280, 289, 438
MaeI	CTAG	1 cut(s)	521
MaeIII	GTNAC	2 cut(s)	509, 583
MalI	GATC	5 cut(s)	6, 28, 55, 134, 375
MboI	GATC	5 cut(s)	4, 26, 53, 132, 373
MboII	GAAGA	2 cut(s)	229, 275
MflI	RGATCY	2 cut(s)	4, 53
MluCI	AATT	4 cut(s)	20, 207, 394, 577
MlyI	GAGTC	1 cut(s)	379
MnlI	CCTC	4 cut(s)	47, 341, 393, 603
MseI	TTAA	3 cut(s)	369, 392, 534
MslI	CAYNNNNRTG	1 cut(s)	369
MspI	CCGG	2 cut(s)	63, 570
MspR9I	CCNGG	2 cut(s)	43, 63
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	277
NciI	CCSGG	1 cut(s)	63
NdeII	GATC	5 cut(s)	4, 26, 53, 132, 373
NlaIII	CATG	6 cut(s)	139, 236, 494, 520, 606, 630
NmuCI	GTSAC	1 cut(s)	583
NspI	RCATGY	1 cut(s)	236
PciI	ACATGT	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	436
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PscI	ACATGT	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	4, 53
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	3 cut(s)	369, 392, 534
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	5 cut(s)	4, 26, 53, 132, 373
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	2 cut(s)	43, 63
SetI	ASST	4 cut(s)	115, 421, 506, 546
SfaNI	GCATC	3 cut(s)	280, 289, 438
SfcI	CTRYAG	3 cut(s)	49, 114, 241
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	505
SmoI	CTYRAG	1 cut(s)	505
Sse9I	AATT	4 cut(s)	20, 207, 394, 577
SsiI	CCGC	1 cut(s)	186
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	2 cut(s)	41, 61
TaaI	ACNGT	2 cut(s)	321, 589
TaqI	TCGA	1 cut(s)	58
TasI	AATT	4 cut(s)	20, 207, 394, 577
Tru1I	TTAA	3 cut(s)	369, 392, 534
Tru9I	TTAA	3 cut(s)	369, 392, 534
TscAI	CASTG	1 cut(s)	594
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	5 cut(s)	95, 116, 479, 489, 540
TspRI	CASTG	1 cut(s)	594
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	1 cut(s)	236
XmiI	GTMKAC	2 cut(s)	140, 162
XspI	CTAG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.