Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008701

Physical Location & Seq

Genomic Coordinates Reverse (-)

18894965 .. 18898459

Gene Structure 3495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1159200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCACCGCCTGATTCGCAAACTCCGGCCTCGCCTCCTCTCGTGGCTCCGCCGATCTCGGTCGGGACTGTTGTGCCAAATATTATTTATGAAGCGTTTTCCTTACAAGGATATAAAGAGAGCAACGGATGGTTTTGAGACGATCATGTATACCAATTCTCATATAGCTGCTTATAAGGCCAGATTTCATGATGGTGGAGTTGTATTGATAAAAGAAATTAGAGACTATGATCAAGGAAAAGATGTCTTCTACAGAGAAGTGCAACTCTTGGGGTGCTTGCATCATCGTCACCTTCTTGCTCTCAGGGGATTCTCTACTGGACATAGACGGTTCCTAGTGTTTGACAACATAGAAAGGGGGAGCTTGAAGGAGCATCTTAATGATCCCATTAGAACTCCCTTGAATTGGAGGACACGGCTACAAATAGCCATTGGTGTCGTGGCTGCATTGGAGTACTTGCTTCTCTTCAATGAACCTCCAATGTATCACGTCTCCATTAACTCAAGTAGCATCATGCTAGATGAAAACTTTAATGCAAAGCTTTCAGACGTCGGGCTTCAAAGTTCTGGTGAAAGTTATGTCACAGTACCACATACCTCGTGCCCGAAAGATTGCATGGGTCAGGAATGCGGTAACATAATGTTCCAGCTTGGGGTGCTGATCCTGGAGCTCATCACCGGTCAATCATCAGAAAACGGGGGAGCAGATCTAGTTCAATGGATCCGAGAGTCTCGCTTCTGCAGTTCTATTCACAAAATGCTAGATCCTGATCTAGGCAGCAGTTACGATTCTAGGGAGCTCAAAAGTCTTCTAGCTGTGGCAAAGTTATGTGTTAGATGTGGGGATAAGCCAAAGGCTTCTATGCAGCAAATTCTTCGGTATCTCCGTAAAAAGATCGAAATTCCACGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

305

Amino Acids

34.94

Weight (kDa)

9.39

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	62 - 194	8.2e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	65 - 210	8.2e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22050 AT5G22050
fragaria_vesca	FvH4_3g26180 FvH4_3g26180 FvH4_3g26180 FvH4_3g26180 FvH4_3g26180
malus_domestica	MD03G1159200.v1.1
prunus_persica	Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1
pyrus_communis	pycom03g11150
rosa_chinensis	RchiOBHm_Chr5g0049031
rosa_laevigata	RLG00000034585
rosa_multiflora	Rmu_sc0004522.1_g000006
rosa_roxburghii	Rroxscaffold_1G00032840
rosa_rugosa	Rorug05G0242400
rosa_samantha	Rh5AG322300 Rh5BG332500 Rh5CG357700 Rh5DG344200
rosa_wichuraiana	Rw5G030410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
AatII	GACGTC	1 cut(s)	552
AccI	GTMKAC	1 cut(s)	149
AciI	CCGC	3 cut(s)	7, 49, 630
AclWI	GGATC	5 cut(s)	377, 655, 715, 728, 758
AcsI	RAATTY	2 cut(s)	870, 900
AcyI	GRCGYC	1 cut(s)	549
AfaI	GTAC	2 cut(s)	455, 588
AfiI	CCNNNNNNNGG	3 cut(s)	405, 652, 773
AgeI	ACCGGT	1 cut(s)	677
AgsI	TTSAA	5 cut(s)	367, 403, 469, 560, 716
AjiI	CACGTC	1 cut(s)	490
AjnI	CCWGG	1 cut(s)	663
AluBI	AGCT	7 cut(s)	167, 363, 541, 649, 670, 799, 815
AluI	AGCT	7 cut(s)	167, 363, 541, 649, 670, 799, 815
Alw21I	GWGCWC	2 cut(s)	672, 801
Alw26I	GTCTC	5 cut(s)	131, 216, 496, 735, 903
AlwI	GGATC	5 cut(s)	377, 655, 715, 728, 758
AoxI	GGCC	2 cut(s)	26, 177
ApeKI	GCWGC	4 cut(s)	167, 443, 777, 865
ApoI	RAATTY	2 cut(s)	870, 900
AsiGI	ACCGGT	1 cut(s)	677
AsuHPI	GGTGA	3 cut(s)	281, 581, 667
BaeGI	GKGCMC	1 cut(s)	605
BamHI	GGATCC	1 cut(s)	720
BanII	GRGCYC	2 cut(s)	672, 801
BauI	CACGAG	3 cut(s)	40, 598, 906
BbsI	GAAGAC	2 cut(s)	238, 800
Bbv12I	GWGCWC	2 cut(s)	672, 801
BbvI	GCAGC	4 cut(s)	154, 430, 789, 877
BccI	CCATC	2 cut(s)	122, 185
BceAI	ACGGC	1 cut(s)	431
BcgI	CGANNNNNNTGC	2 cut(s)	857, 891
BciT130I	CCWGG	1 cut(s)	665
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	5 cut(s)	131, 216, 496, 735, 903
BfaI	CTAG	8 cut(s)	335, 518, 710, 761, 773, 792, 812, 913
BfmI	CTRYAG	2 cut(s)	250, 739
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	4 cut(s)	168, 444, 778, 866
BlsI	GCNGC	4 cut(s)	169, 445, 779, 867
BmcAI	AGTACT	1 cut(s)	455
Bme1390I	CCNGG	1 cut(s)	665
BmgBI	CACGTC	1 cut(s)	490
BmiI	GGNNCC	3 cut(s)	47, 332, 722
BmrFI	CCNGG	1 cut(s)	665
BmsI	GCATC	3 cut(s)	289, 382, 519
BpiI	GAAGAC	2 cut(s)	238, 800
BpmI	CTGGAG	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	487
BsaBI	GATNNNNATC	1 cut(s)	768
BsaHI	GRCGYC	1 cut(s)	549
BsaWI	WCCGGW	1 cut(s)	677
Bsc4I	CCNNNNNNNGG	3 cut(s)	405, 652, 773
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	1 cut(s)	322
Bse8I	GATNNNNATC	1 cut(s)	768
BseBI	CCWGG	1 cut(s)	665
BseGI	GGATG	1 cut(s)	133
BseJI	GATNNNNATC	1 cut(s)	768
BseLI	CCNNNNNNNGG	3 cut(s)	405, 652, 773
BseMII	CTCAG	1 cut(s)	316
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	605
BseXI	GCAGC	4 cut(s)	154, 430, 789, 877
Bsh1285I	CGRYCG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	28, 179
BshTI	ACCGGT	1 cut(s)	677
BsiEI	CGRYCG	1 cut(s)	62
BsiHKAI	GWGCWC	2 cut(s)	672, 801
BsiSI	CCGG	2 cut(s)	25, 678
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	3 cut(s)	405, 652, 773
BsmAI	GTCTC	5 cut(s)	131, 216, 496, 735, 903
BsmBI	CGTCTC	2 cut(s)	131, 496
BsmFI	GGGAC	1 cut(s)	78
BsmI	GAATGC	1 cut(s)	632
BsnI	GGCC	2 cut(s)	28, 179
Bsp1286I	GDGCHC	3 cut(s)	605, 672, 801
BspACI	CCGC	3 cut(s)	7, 49, 630
BspANI	GGCC	2 cut(s)	28, 179
BspCNI	CTCAG	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	3 cut(s)	47, 332, 722
BspMAI	CTGCAG	1 cut(s)	743
BspPI	GGATC	5 cut(s)	377, 655, 715, 728, 758
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	677
BssNAI	GTATAC	1 cut(s)	150
BssNI	GRCGYC	1 cut(s)	549
BssSI	CACGAG	3 cut(s)	40, 598, 906
Bst1107I	GTATAC	1 cut(s)	150
Bst2BI	CACGAG	3 cut(s)	40, 598, 906
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	3 cut(s)	69, 330, 586
Bst6I	CTCTTC	1 cut(s)	470
BstACI	GRCGYC	1 cut(s)	549
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	1 cut(s)	302
BstENI	CCTNNNNNAGG	1 cut(s)	771
BstF5I	GGATG	1 cut(s)	133
BstMAI	GTCTC	5 cut(s)	131, 216, 496, 735, 903
BstMCI	CGRYCG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 176, 655
BstNI	CCWGG	1 cut(s)	665
BstSCI	CCNGG	1 cut(s)	663
BstSFI	CTRYAG	2 cut(s)	250, 739
BstSLI	GKGCMC	1 cut(s)	605
BstV1I	GCAGC	4 cut(s)	154, 430, 789, 877
BstV2I	GAAGAC	2 cut(s)	238, 800
BstX2I	RGATCY	3 cut(s)	706, 720, 763
BstYI	RGATCY	3 cut(s)	706, 720, 763
BstZ17I	GTATAC	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	28, 179
BtrI	CACGTC	1 cut(s)	490
BtsCI	GGATG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	278
CciI	TCATGA	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	677
Csp6I	GTAC	2 cut(s)	454, 587
CspAI	ACCGGT	1 cut(s)	677
CviAII	CATG	4 cut(s)	145, 188, 514, 616
CviQI	GTAC	2 cut(s)	454, 587
DdeI	CTNAG	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
EciI	GGCGGA	1 cut(s)	38
Ecl136II	GAGCTC	2 cut(s)	670, 799
Eco24I	GRGCYC	2 cut(s)	672, 801
Eco53kI	GAGCTC	2 cut(s)	670, 799
EcoICRI	GAGCTC	2 cut(s)	670, 799
EcoNI	CCTNNNNNAGG	1 cut(s)	771
EcoRII	CCWGG	1 cut(s)	663
EcoT38I	GRGCYC	2 cut(s)	672, 801
Esp3I	CGTCTC	2 cut(s)	131, 496
FaeI	CATG	4 cut(s)	148, 191, 517, 619
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	4 cut(s)	144, 187, 513, 615
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	4 cut(s)	168, 444, 778, 866
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	2 cut(s)	672, 801
Fsp4HI	GCNGC	4 cut(s)	168, 444, 778, 866
FspBI	CTAG	8 cut(s)	335, 518, 710, 761, 773, 792, 812, 913
GluI	GCNGC	4 cut(s)	168, 444, 778, 866
GsuI	CTGGAG	1 cut(s)	686
HaeIII	GGCC	2 cut(s)	28, 179
HapII	CCGG	2 cut(s)	25, 678
Hin1I	GRCGYC	1 cut(s)	549
Hin1II	CATG	4 cut(s)	148, 191, 517, 619
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	4 cut(s)	13, 309, 728, 788
HpaII	CCGG	2 cut(s)	25, 678
HphI	GGTGA	3 cut(s)	281, 581, 667
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	3 cut(s)	547, 691, 725
Hpy188III	TCNNGA	4 cut(s)	63, 188, 623, 767
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	1 cut(s)	554
HpyAV	CCTTC	2 cut(s)	302, 361
HpyCH4III	ACNGT	3 cut(s)	69, 330, 586
HpyCH4IV	ACGT	2 cut(s)	489, 549
HpyCH4V	TGCA	8 cut(s)	4, 262, 280, 446, 536, 615, 741, 865
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 176, 655
HpyF3I	CTNAG	1 cut(s)	302
HpySE526I	ACGT	2 cut(s)	489, 549
Hsp92I	GRCGYC	1 cut(s)	549
Hsp92II	CATG	4 cut(s)	148, 191, 517, 619
Ksp22I	TGATCA	1 cut(s)	229
LmnI	GCTCC	6 cut(s)	51, 360, 370, 667, 701, 796
Lsp1109I	GCAGC	4 cut(s)	154, 430, 789, 877
LweI	GCATC	3 cut(s)	289, 382, 519
MaeI	CTAG	8 cut(s)	335, 518, 710, 761, 773, 792, 812, 913
MaeII	ACGT	2 cut(s)	489, 549
MaeIII	GTNAC	4 cut(s)	287, 580, 632, 782
MboII	GAAGA	4 cut(s)	238, 457, 800, 866
MflI	RGATCY	3 cut(s)	706, 720, 763
MhlI	GDGCHC	3 cut(s)	605, 672, 801
MluCI	AATT	5 cut(s)	154, 216, 403, 870, 900
MlyI	GAGTC	1 cut(s)	737
MnlI	CCTC	6 cut(s)	39, 44, 47, 402, 486, 607
MseI	TTAA	3 cut(s)	378, 498, 531
MslI	CAYNNNNRTG	2 cut(s)	192, 378
MspI	CCGG	2 cut(s)	25, 678
MspR9I	CCNGG	1 cut(s)	665
Mva1269I	GAATGC	1 cut(s)	632
MvaI	CCWGG	1 cut(s)	665
MwoI	GCNNNNNNNGC	3 cut(s)	15, 176, 655
NlaIII	CATG	4 cut(s)	148, 191, 517, 619
NlaIV	GGNNCC	3 cut(s)	47, 332, 722
NmuCI	GTSAC	2 cut(s)	287, 580
PagI	TCATGA	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	883
PctI	GAATGC	1 cut(s)	632
PfeI	GAWTC	3 cut(s)	13, 309, 788
PfoI	TCCNGGA	1 cut(s)	663
PinAI	ACCGGT	1 cut(s)	677
PkrI	GCNGC	4 cut(s)	169, 445, 779, 867
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
PsiI	TTATAA	1 cut(s)	174
Psp124BI	GAGCTC	2 cut(s)	672, 801
Psp6I	CCWGG	1 cut(s)	663
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	3 cut(s)	47, 332, 722
PstI	CTGCAG	1 cut(s)	743
PsuI	RGATCY	3 cut(s)	706, 720, 763
RsaI	GTAC	2 cut(s)	455, 588
RsaNI	GTAC	2 cut(s)	454, 587
RseI	CAYNNNNRTG	2 cut(s)	192, 378
SacI	GAGCTC	2 cut(s)	672, 801
SaqAI	TTAA	3 cut(s)	378, 498, 531
SatI	GCNGC	4 cut(s)	168, 444, 778, 866
ScaI	AGTACT	1 cut(s)	455
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	1 cut(s)	665
SduI	GDGCHC	3 cut(s)	605, 672, 801
SfaNI	GCATC	3 cut(s)	289, 382, 519
SfcI	CTRYAG	2 cut(s)	250, 739
SmiMI	CAYNNNNRTG	2 cut(s)	192, 378
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	5 cut(s)	154, 216, 403, 870, 900
SsiI	CCGC	3 cut(s)	7, 49, 630
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	8 cut(s)	335, 518, 710, 761, 773, 792, 812, 913
SstI	GAGCTC	2 cut(s)	672, 801
StyD4I	CCNGG	1 cut(s)	663
TaaI	ACNGT	3 cut(s)	69, 330, 586
TaiI	ACGT	2 cut(s)	492, 552
TaqI	TCGA	1 cut(s)	897
TaqII	GACCGA	1 cut(s)	48
TasI	AATT	5 cut(s)	154, 216, 403, 870, 900
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	3 cut(s)	13, 309, 788
Tru1I	TTAA	3 cut(s)	378, 498, 531
Tru9I	TTAA	3 cut(s)	378, 498, 531
TseFI	GTSAC	2 cut(s)	287, 580
TseI	GCWGC	4 cut(s)	167, 443, 777, 865
Tsp45I	GTSAC	2 cut(s)	287, 580
TspDTI	ATGAA	4 cut(s)	104, 176, 486, 537
TspGWI	ACGGA	2 cut(s)	140, 875
XagI	CCTNNNNNAGG	1 cut(s)	771
XapI	RAATTY	2 cut(s)	870, 900
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	149
XspI	CTAG	8 cut(s)	335, 518, 710, 761, 773, 792, 812, 913
ZraI	GACGTC	1 cut(s)	550
ZrmI	AGTACT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.