Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008701

Physical Location & Seq

Genomic Coordinates Reverse (-)

10771874 .. 10775181

Gene Structure 3308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g11150.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCACCGCCTGATTCGCAAACTCCGGCCTCGCCTCCTCTCGTGGCTCCGCCGATCTCGGTCGGGCCAAATATTATTTATGAAGCATTTTCCTTACAAGGATATAAAGAGAGCAACGGATGGTTTTGAGACAATCATGTATACCAATTCTCATATAGCTGCTTATAAGGCCAGATTTCATGATGGTGGAGTTGTATTGATAAAAGAAATTAGAGACTACGATCAAGGAAAAGATGTCTTCTACAGAGAAGTGCAACTGTTGGGGTGCTTGCATCATCGTCACCTTCTTGCTCTCAGGGGATTCTCTACTGGACATAGACGGTTCCTAGTGTTTGACAACATAGAAAGGGGGAGCTTGAAGGAGCATCTTAATGATCCCATTAGAACTCCCTTGAATTGGAGGACACGGCTACAAATAGCCATTGGTGTCGTGGCAGCATTGGAGTACTTGCTTCTCTTCAACGAACCTCCAATGTATCACGTCTCCATTAACTCAAGTAGCATCATGCTAGATGAAAACTTTAATGCAAAGCTTTCAGACGTCGGGCTTCAAAGTTCTGGTGAAAGTTATGTCACAGTACCACATACCTCATGCCCGAAAGATTGCATGGGTCAGGAATGCGGTAACATAATGTTCCAGCTTGGGGTGCTGATCCTGGAGCTCATCACCGGTCAATCATCAGAAAATGGAGGAGCAGATCTAGTTCAATGGATCCGGGAGTCTCGCTTCTGTAGTTCTATTCACAAGATGCTAGATCCTGATCTTGGTAGCAGTTACGATTCTAGGGAGCTCAAAAGTCTTCTAGCTGTGGCAAAGTTATGTGTTAGAGATGGGGATAAGCCAAAGGCTTCTATGCAGCAAATTCTGCGGTATCTCCGTAAAAAGATCGAAATTCCACGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

302

Amino Acids

34.6

Weight (kDa)

9.34

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22050 AT5G22050
fragaria_vesca	FvH4_3g26180 FvH4_3g26180 FvH4_3g26180 FvH4_3g26180 FvH4_3g26180
malus_domestica	MD03G1159200.v1.1
prunus_persica	Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1
pyrus_communis	pycom03g11150
rosa_chinensis	RchiOBHm_Chr5g0049031
rosa_laevigata	RLG00000034585
rosa_multiflora	Rmu_sc0004522.1_g000006
rosa_roxburghii	Rroxscaffold_1G00032840
rosa_rugosa	Rorug05G0242400
rosa_samantha	Rh5AG322300 Rh5BG332500 Rh5CG357700 Rh5DG344200
rosa_wichuraiana	Rw5G030410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
AatII	GACGTC	1 cut(s)	543
AccI	GTMKAC	1 cut(s)	140
AciI	CCGC	4 cut(s)	7, 49, 621, 868
AclWI	GGATC	5 cut(s)	368, 646, 706, 719, 749
AcsI	RAATTY	2 cut(s)	861, 891
AcyI	GRCGYC	1 cut(s)	540
AfaI	GTAC	2 cut(s)	446, 579
AfiI	CCNNNNNNNGG	3 cut(s)	396, 643, 764
AgeI	ACCGGT	1 cut(s)	668
AgsI	TTSAA	5 cut(s)	358, 394, 460, 551, 707
AjiI	CACGTC	1 cut(s)	481
AjnI	CCWGG	1 cut(s)	654
AluBI	AGCT	7 cut(s)	158, 354, 532, 640, 661, 790, 806
AluI	AGCT	7 cut(s)	158, 354, 532, 640, 661, 790, 806
Alw21I	GWGCWC	2 cut(s)	663, 792
Alw26I	GTCTC	5 cut(s)	122, 207, 487, 726, 894
AlwI	GGATC	5 cut(s)	368, 646, 706, 719, 749
AoxI	GGCC	3 cut(s)	26, 64, 168
ApeKI	GCWGC	3 cut(s)	158, 434, 856
ApoI	RAATTY	2 cut(s)	861, 891
AsiGI	ACCGGT	1 cut(s)	668
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	716
AsuHPI	GGTGA	3 cut(s)	272, 572, 658
BamHI	GGATCC	1 cut(s)	711
BanII	GRGCYC	2 cut(s)	663, 792
BauI	CACGAG	2 cut(s)	40, 897
BbsI	GAAGAC	2 cut(s)	229, 791
Bbv12I	GWGCWC	2 cut(s)	663, 792
BbvI	GCAGC	3 cut(s)	145, 446, 868
BccI	CCATC	3 cut(s)	113, 176, 824
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	656
BcnI	CCSGG	1 cut(s)	716
BcoDI	GTCTC	5 cut(s)	122, 207, 487, 726, 894
BfaI	CTAG	7 cut(s)	326, 509, 701, 752, 783, 803, 904
BfmI	CTRYAG	2 cut(s)	241, 730
BglII	AGATCT	1 cut(s)	697
BisI	GCNGC	3 cut(s)	159, 435, 857
BlsI	GCNGC	3 cut(s)	160, 436, 858
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	2 cut(s)	656, 716
BmgBI	CACGTC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	3 cut(s)	47, 323, 713
BmrFI	CCNGG	2 cut(s)	656, 716
BmsI	GCATC	4 cut(s)	280, 373, 510, 738
BpiI	GAAGAC	2 cut(s)	229, 791
BpmI	CTGGAG	1 cut(s)	677
BpuEI	CTTGAG	1 cut(s)	478
BpuMI	CCSGG	1 cut(s)	716
BsaBI	GATNNNNATC	1 cut(s)	759
BsaHI	GRCGYC	1 cut(s)	540
BsaWI	WCCGGW	1 cut(s)	668
Bsc4I	CCNNNNNNNGG	3 cut(s)	396, 643, 764
Bse118I	RCCGGY	1 cut(s)	668
Bse1I	ACTGG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	759
BseBI	CCWGG	1 cut(s)	656
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	3 cut(s)	396, 643, 764
BseMII	CTCAG	1 cut(s)	307
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	2 cut(s)	26, 705
BseXI	GCAGC	3 cut(s)	145, 446, 868
Bsh1285I	CGRYCG	1 cut(s)	62
BshFI	GGCC	3 cut(s)	28, 66, 170
BshTI	ACCGGT	1 cut(s)	668
BsiEI	CGRYCG	1 cut(s)	62
BsiHKAI	GWGCWC	2 cut(s)	663, 792
BsiSI	CCGG	3 cut(s)	25, 669, 715
BslI	CCNNNNNNNGG	3 cut(s)	396, 643, 764
BsmAI	GTCTC	5 cut(s)	122, 207, 487, 726, 894
BsmBI	CGTCTC	1 cut(s)	487
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	3 cut(s)	28, 66, 170
Bsp1286I	GDGCHC	2 cut(s)	663, 792
Bsp143I	GATC	9 cut(s)	53, 220, 373, 651, 697, 711, 754, 760, 885
BspACI	CCGC	4 cut(s)	7, 49, 621, 868
BspANI	GGCC	3 cut(s)	28, 66, 170
BspCNI	CTCAG	1 cut(s)	306
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	3 cut(s)	47, 323, 713
BspPI	GGATC	5 cut(s)	368, 646, 706, 719, 749
BsrFI	RCCGGY	1 cut(s)	668
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	668
BssMI	GATC	9 cut(s)	53, 220, 373, 651, 697, 711, 754, 760, 885
BssNAI	GTATAC	1 cut(s)	141
BssNI	GRCGYC	1 cut(s)	540
BssSI	CACGAG	2 cut(s)	40, 897
Bst1107I	GTATAC	1 cut(s)	141
Bst2BI	CACGAG	2 cut(s)	40, 897
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	3 cut(s)	258, 321, 577
Bst6I	CTCTTC	1 cut(s)	461
BstACI	GRCGYC	1 cut(s)	540
BstAPI	GCANNNNNTGC	1 cut(s)	865
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	9 cut(s)	56, 223, 376, 654, 700, 714, 757, 763, 888
BstMAI	GTCTC	5 cut(s)	122, 207, 487, 726, 894
BstMBI	GATC	9 cut(s)	53, 220, 373, 651, 697, 711, 754, 760, 885
BstMCI	CGRYCG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 167, 646, 865
BstNI	CCWGG	1 cut(s)	656
BstSCI	CCNGG	2 cut(s)	654, 714
BstSFI	CTRYAG	2 cut(s)	241, 730
BstV1I	GCAGC	3 cut(s)	145, 446, 868
BstV2I	GAAGAC	2 cut(s)	229, 791
BstX2I	RGATCY	3 cut(s)	697, 711, 754
BstYI	RGATCY	3 cut(s)	697, 711, 754
BstZ17I	GTATAC	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	28, 66, 170
BtrI	CACGTC	1 cut(s)	481
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	269
CciI	TCATGA	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	668
Cfr13I	GGNCC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	445, 578
CspAI	ACCGGT	1 cut(s)	668
CviAII	CATG	5 cut(s)	136, 179, 505, 591, 607
CviQI	GTAC	2 cut(s)	445, 578
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	9 cut(s)	55, 222, 375, 653, 699, 713, 756, 762, 887
DpnII	GATC	9 cut(s)	53, 220, 373, 651, 697, 711, 754, 760, 885
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
EciI	GGCGGA	1 cut(s)	38
Ecl136II	GAGCTC	2 cut(s)	661, 790
Eco24I	GRGCYC	2 cut(s)	663, 792
Eco53kI	GAGCTC	2 cut(s)	661, 790
EcoICRI	GAGCTC	2 cut(s)	661, 790
EcoRII	CCWGG	1 cut(s)	654
EcoT38I	GRGCYC	2 cut(s)	663, 792
Esp3I	CGTCTC	1 cut(s)	487
FaeI	CATG	5 cut(s)	139, 182, 508, 594, 610
FatI	CATG	5 cut(s)	135, 178, 504, 590, 606
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	3 cut(s)	159, 435, 857
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	2 cut(s)	663, 792
Fsp4HI	GCNGC	3 cut(s)	159, 435, 857
FspBI	CTAG	7 cut(s)	326, 509, 701, 752, 783, 803, 904
GluI	GCNGC	3 cut(s)	159, 435, 857
GsuI	CTGGAG	1 cut(s)	677
HaeIII	GGCC	3 cut(s)	28, 66, 170
HapII	CCGG	3 cut(s)	25, 669, 715
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	5 cut(s)	139, 182, 508, 594, 610
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	4 cut(s)	13, 300, 719, 779
HpaII	CCGG	3 cut(s)	25, 669, 715
HphI	GGTGA	3 cut(s)	272, 572, 658
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	2 cut(s)	538, 682
Hpy188III	TCNNGA	3 cut(s)	179, 614, 758
Hpy8I	GTNNAC	1 cut(s)	141
Hpy99I	CGWCG	1 cut(s)	545
HpyAV	CCTTC	2 cut(s)	293, 352
HpyCH4III	ACNGT	3 cut(s)	258, 321, 577
HpyCH4IV	ACGT	2 cut(s)	480, 540
HpyCH4V	TGCA	6 cut(s)	4, 253, 271, 527, 606, 856
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 167, 646, 865
HpyF3I	CTNAG	1 cut(s)	293
HpySE526I	ACGT	2 cut(s)	480, 540
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	5 cut(s)	139, 182, 508, 594, 610
Kzo9I	GATC	9 cut(s)	53, 220, 373, 651, 697, 711, 754, 760, 885
LmnI	GCTCC	6 cut(s)	51, 351, 361, 658, 692, 787
Lsp1109I	GCAGC	3 cut(s)	145, 446, 868
LweI	GCATC	4 cut(s)	280, 373, 510, 738
MaeI	CTAG	7 cut(s)	326, 509, 701, 752, 783, 803, 904
MaeII	ACGT	2 cut(s)	480, 540
MaeIII	GTNAC	4 cut(s)	278, 571, 623, 773
MalI	GATC	9 cut(s)	55, 222, 375, 653, 699, 713, 756, 762, 887
MboI	GATC	9 cut(s)	53, 220, 373, 651, 697, 711, 754, 760, 885
MboII	GAAGA	3 cut(s)	229, 448, 791
MflI	RGATCY	3 cut(s)	697, 711, 754
MhlI	GDGCHC	2 cut(s)	663, 792
MluCI	AATT	5 cut(s)	145, 207, 394, 861, 891
MlyI	GAGTC	1 cut(s)	728
MnlI	CCTC	7 cut(s)	39, 44, 47, 393, 477, 598, 683
MseI	TTAA	3 cut(s)	369, 489, 522
MslI	CAYNNNNRTG	2 cut(s)	183, 369
MspI	CCGG	3 cut(s)	25, 669, 715
MspR9I	CCNGG	2 cut(s)	656, 716
Mva1269I	GAATGC	1 cut(s)	623
MvaI	CCWGG	1 cut(s)	656
MwoI	GCNNNNNNNGC	4 cut(s)	15, 167, 646, 865
NciI	CCSGG	1 cut(s)	716
NdeII	GATC	9 cut(s)	53, 220, 373, 651, 697, 711, 754, 760, 885
NlaIII	CATG	5 cut(s)	139, 182, 508, 594, 610
NlaIV	GGNNCC	3 cut(s)	47, 323, 713
NmuCI	GTSAC	2 cut(s)	278, 571
PagI	TCATGA	1 cut(s)	178
PctI	GAATGC	1 cut(s)	623
PfeI	GAWTC	3 cut(s)	13, 300, 779
PfoI	TCCNGGA	2 cut(s)	654, 714
PinAI	ACCGGT	1 cut(s)	668
PkrI	GCNGC	3 cut(s)	160, 436, 858
PleI	GAGTC	1 cut(s)	727
PpsI	GAGTC	1 cut(s)	727
PsiI	TTATAA	1 cut(s)	165
Psp124BI	GAGCTC	2 cut(s)	663, 792
Psp6I	CCWGG	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	654
PspN4I	GGNNCC	3 cut(s)	47, 323, 713
PspPI	GGNCC	1 cut(s)	64
PsuI	RGATCY	3 cut(s)	697, 711, 754
RsaI	GTAC	2 cut(s)	446, 579
RsaNI	GTAC	2 cut(s)	445, 578
RseI	CAYNNNNRTG	2 cut(s)	183, 369
SacI	GAGCTC	2 cut(s)	663, 792
SaqAI	TTAA	3 cut(s)	369, 489, 522
SatI	GCNGC	3 cut(s)	159, 435, 857
Sau3AI	GATC	9 cut(s)	53, 220, 373, 651, 697, 711, 754, 760, 885
Sau96I	GGNCC	1 cut(s)	64
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	1 cut(s)	728
ScrFI	CCNGG	2 cut(s)	656, 716
SduI	GDGCHC	2 cut(s)	663, 792
SfaNI	GCATC	4 cut(s)	280, 373, 510, 738
SfcI	CTRYAG	2 cut(s)	241, 730
SmiMI	CAYNNNNRTG	2 cut(s)	183, 369
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	5 cut(s)	145, 207, 394, 861, 891
SsiI	CCGC	4 cut(s)	7, 49, 621, 868
SspI	AATATT	1 cut(s)	72
SspMI	CTAG	7 cut(s)	326, 509, 701, 752, 783, 803, 904
SstI	GAGCTC	2 cut(s)	663, 792
StyD4I	CCNGG	2 cut(s)	654, 714
TaaI	ACNGT	3 cut(s)	258, 321, 577
TaiI	ACGT	2 cut(s)	483, 543
TaqI	TCGA	1 cut(s)	888
TaqII	GACCGA	1 cut(s)	48
TasI	AATT	5 cut(s)	145, 207, 394, 861, 891
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	3 cut(s)	13, 300, 779
Tru1I	TTAA	3 cut(s)	369, 489, 522
Tru9I	TTAA	3 cut(s)	369, 489, 522
TseFI	GTSAC	2 cut(s)	278, 571
TseI	GCWGC	3 cut(s)	158, 434, 856
Tsp45I	GTSAC	2 cut(s)	278, 571
TspDTI	ATGAA	3 cut(s)	95, 167, 528
TspGWI	ACGGA	2 cut(s)	131, 866
XapI	RAATTY	2 cut(s)	861, 891
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	7 cut(s)	326, 509, 701, 752, 783, 803, 904
ZraI	GACGTC	1 cut(s)	541
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.