Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008701

Physical Location & Seq

Genomic Coordinates Reverse (-)

47028712 .. 47033397

Gene Structure 4686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG344200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGATCTCTCTGTCCCCAAATTCCGATCTCGTCTCCTCGCCTGGCTCTGCAGATCTCGCCCCGGCCCAATAGTATTTATGAAGCGTTTTCCATACAAGGATATAAAGAGAGCTACAGATAGTTTTCATAGGATCATGTATTCCAACTCTCACGTAGCTGTCTACAAGGCCAGATTTCAAGATGGCGGGGTTGCTTTGATAAAAGAAATTAGAGATTTTAGTCAAGCAGAACATGTCTTCTACAGGGAAGTGCAACTCTTGGGGCGTCTGCATCATCGGCACCTTCTTGCTCTTAGGGGTTTCTCTATCGGAAATAAACGGTTGCTAGTATTTGAAAATATAGAAAGAGGGAGCTTGAAGGAACATCTCAATGATCCCCTTAGGACTCCCTTGAATTGGAGGACAAGACTTCAAATAGCCGTTGGTGTGGTGGCAGCATTGGAATATTTGCTTCTTTTCAATGAACCCCCAATGTTTCATGTCTCCATTAGCTCAAGTAACATAATGCTAGATGAAAACTTCAATGCAAAGCTTTCAGACATGGGTTTTCAAAGTTCCGGTGAAAATTGCGTCACGGTGCCTCATACCTCATGTCCAAAAGATTGCATGGGTCAGGAATGTGGTAACATTATGTTCCAGCTTGGGGTGCTGATCCTGGAGCTCATCACTGGTCAATCATCTGAAAATGGGGGTGCTGATCTAGTTCAGTGGATCCGAGAGTCTCGCTTCTGCAGTTCGATTGACAATATGATAGATCCTGATCTAGGTAATAGTTATGATTCTAGGGAGCTTAGAAATCTTCTAGCTGTGGCAAAGTTGTGTGTAAAATCTGGGGATAAGTCAACGACTTCTATTCTGCATATACTCCGGTATCTCCAGAAAAAATTAGTTATTTCTCGTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

301

Amino Acids

34.31

Weight (kDa)

9.17

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	54 - 192	2.5e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	64 - 187	2.7e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22050 AT5G22050
fragaria_vesca	FvH4_3g26180 FvH4_3g26180 FvH4_3g26180 FvH4_3g26180 FvH4_3g26180
malus_domestica	MD03G1159200.v1.1
prunus_persica	Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1
pyrus_communis	pycom03g11150
rosa_chinensis	RchiOBHm_Chr5g0049031
rosa_laevigata	RLG00000034585
rosa_multiflora	Rmu_sc0004522.1_g000006
rosa_roxburghii	Rroxscaffold_1G00032840
rosa_rugosa	Rorug05G0242400
rosa_samantha	Rh5AG322300 Rh5BG332500 Rh5CG357700 Rh5DG344200
rosa_wichuraiana	Rw5G030410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	279, 577
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	7 cut(s)	12, 140, 368, 646, 706, 719, 749
AcsI	RAATTY	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	265
AfiI	CCNNNNNNNGG	3 cut(s)	396, 643, 764
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	8 cut(s)	179, 335, 358, 394, 413, 460, 523, 551
AjnI	CCWGG	2 cut(s)	41, 654
AluBI	AGCT	9 cut(s)	113, 158, 354, 492, 532, 640, 661, 790, 806
AluI	AGCT	9 cut(s)	113, 158, 354, 492, 532, 640, 661, 790, 806
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	3 cut(s)	38, 487, 726
AlwI	GGATC	7 cut(s)	12, 140, 368, 646, 706, 719, 749
AoxI	GGCC	2 cut(s)	64, 168
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	572
AxyI	CCTNAGG	1 cut(s)	380
BaeI	ACNNNNGTAYC	2 cut(s)	854, 887
BamHI	GGATCC	1 cut(s)	711
BanI	GGYRCC	2 cut(s)	279, 577
BanII	GRGCYC	1 cut(s)	663
BauI	CACGAG	1 cut(s)	897
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	663
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	2 cut(s)	43, 656
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	3 cut(s)	38, 487, 726
BfaI	CTAG	7 cut(s)	326, 509, 701, 764, 783, 803, 904
BfmI	CTRYAG	4 cut(s)	49, 114, 241, 730
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
Bme1390I	CCNGG	3 cut(s)	43, 63, 656
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	3 cut(s)	281, 579, 713
BmrFI	CCNGG	3 cut(s)	43, 63, 656
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	229
BpmI	CTGGAG	2 cut(s)	677, 860
BpuEI	CTTGAG	1 cut(s)	478
BpuMI	CCSGG	1 cut(s)	63
BsaAI	YACGTR	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	759
BsaHI	GRCGYC	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	2 cut(s)	557, 867
Bsc4I	CCNNNNNNNGG	3 cut(s)	396, 643, 764
Bse1I	ACTGG	1 cut(s)	673
Bse21I	CCTNAGG	1 cut(s)	380
Bse8I	GATNNNNATC	1 cut(s)	759
BseBI	CCWGG	2 cut(s)	43, 656
BseDI	CCNNGG	1 cut(s)	61
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	3 cut(s)	396, 643, 764
BseNI	ACTGG	1 cut(s)	673
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	446
BshFI	GGCC	2 cut(s)	66, 170
BshNI	GGYRCC	2 cut(s)	279, 577
BsiHKAI	GWGCWC	1 cut(s)	663
BsiSI	CCGG	3 cut(s)	63, 558, 868
BslI	CCNNNNNNNGG	3 cut(s)	396, 643, 764
BsmAI	GTCTC	3 cut(s)	38, 487, 726
BsmBI	CGTCTC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	66, 170
Bsp1286I	GDGCHC	1 cut(s)	663
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	2 cut(s)	66, 170
BspLI	GGNNCC	3 cut(s)	281, 579, 713
BspMAI	CTGCAG	2 cut(s)	53, 734
BspPI	GGATC	7 cut(s)	12, 140, 368, 646, 706, 719, 749
BspT107I	GGYRCC	2 cut(s)	279, 577
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	1 cut(s)	61
BssNI	GRCGYC	1 cut(s)	265
BssSI	CACGAG	1 cut(s)	897
Bst2BI	CACGAG	1 cut(s)	897
Bst2UI	CCWGG	2 cut(s)	43, 656
Bst4CI	ACNGT	2 cut(s)	321, 577
BstACI	GRCGYC	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	154
BstDEI	CTNAG	3 cut(s)	293, 380, 791
BstENI	CCTNNNNNAGG	1 cut(s)	762
BstMAI	GTCTC	3 cut(s)	38, 487, 726
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 277, 646
BstNI	CCWGG	2 cut(s)	43, 656
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	3 cut(s)	41, 61, 654
BstSFI	CTRYAG	4 cut(s)	49, 114, 241, 730
BstV1I	GCAGC	1 cut(s)	446
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	4 cut(s)	4, 53, 711, 754
BstYI	RGATCY	4 cut(s)	4, 53, 711, 754
Bsu36I	CCTNAGG	1 cut(s)	380
BsuRI	GGCC	2 cut(s)	66, 170
BtsIMutI	CAGTG	2 cut(s)	666, 713
Cfr13I	GGNCC	1 cut(s)	65
CseI	GACGC	2 cut(s)	254, 559
CviAII	CATG	6 cut(s)	136, 233, 479, 541, 591, 607
DdeI	CTNAG	3 cut(s)	293, 380, 791
Ecl136II	GAGCTC	1 cut(s)	661
Eco24I	GRGCYC	1 cut(s)	663
Eco53kI	GAGCTC	1 cut(s)	661
Eco81I	CCTNAGG	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	661
EcoNI	CCTNNNNNAGG	1 cut(s)	762
EcoRII	CCWGG	2 cut(s)	41, 654
EcoT38I	GRGCYC	1 cut(s)	663
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	6 cut(s)	139, 236, 482, 544, 594, 610
FatI	CATG	6 cut(s)	135, 232, 478, 540, 590, 606
FauI	CCCGC	1 cut(s)	179
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	435
FriOI	GRGCYC	1 cut(s)	663
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	7 cut(s)	326, 509, 701, 764, 783, 803, 904
GluI	GCNGC	1 cut(s)	435
GsuI	CTGGAG	2 cut(s)	677, 860
HaeIII	GGCC	2 cut(s)	66, 170
HapII	CCGG	3 cut(s)	63, 558, 868
HgaI	GACGC	2 cut(s)	254, 559
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	6 cut(s)	139, 236, 482, 544, 594, 610
HincII	GTYRAC	1 cut(s)	843
HindII	GTYRAC	1 cut(s)	843
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	3 cut(s)	385, 719, 779
HpaII	CCGG	3 cut(s)	63, 558, 868
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	2 cut(s)	163, 843
Hpy188I	TCNGA	5 cut(s)	26, 311, 538, 682, 716
Hpy188III	TCNNGA	5 cut(s)	179, 614, 758, 877, 899
Hpy8I	GTNNAC	2 cut(s)	163, 843
HpyAV	CCTTC	2 cut(s)	293, 352
HpyCH4III	ACNGT	2 cut(s)	321, 577
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	7 cut(s)	51, 253, 271, 527, 606, 732, 859
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 277, 646
HpyF3I	CTNAG	3 cut(s)	293, 380, 791
HpySE526I	ACGT	1 cut(s)	153
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	6 cut(s)	139, 236, 482, 544, 594, 610
LmnI	GCTCC	3 cut(s)	351, 658, 787
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	7 cut(s)	326, 509, 701, 764, 783, 803, 904
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	4 cut(s)	497, 571, 623, 899
MboII	GAAGA	2 cut(s)	229, 791
MflI	RGATCY	4 cut(s)	4, 53, 711, 754
MhlI	GDGCHC	1 cut(s)	663
MluCI	AATT	5 cut(s)	20, 207, 394, 565, 884
MlyI	GAGTC	2 cut(s)	379, 728
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	5 cut(s)	47, 341, 393, 591, 598
MslI	CAYNNNNRTG	1 cut(s)	369
MspI	CCGG	3 cut(s)	63, 558, 868
MspR9I	CCNGG	3 cut(s)	43, 63, 656
MvaI	CCWGG	2 cut(s)	43, 656
MwoI	GCNNNNNNNGC	3 cut(s)	57, 277, 646
NciI	CCSGG	1 cut(s)	63
NlaIII	CATG	6 cut(s)	139, 236, 482, 544, 594, 610
NlaIV	GGNNCC	3 cut(s)	281, 579, 713
NmuCI	GTSAC	2 cut(s)	571, 899
NspI	RCATGY	1 cut(s)	236
PciI	ACATGT	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	779
PfoI	TCCNGGA	1 cut(s)	654
PkrI	GCNGC	1 cut(s)	436
PleI	GAGTC	2 cut(s)	379, 727
PpsI	GAGTC	2 cut(s)	379, 727
Ppu21I	YACGTR	1 cut(s)	154
PscI	ACATGT	1 cut(s)	232
Psp124BI	GAGCTC	1 cut(s)	663
Psp6I	CCWGG	2 cut(s)	41, 654
PspGI	CCWGG	2 cut(s)	41, 654
PspN4I	GGNNCC	3 cut(s)	281, 579, 713
PspPI	GGNCC	1 cut(s)	65
PstI	CTGCAG	2 cut(s)	53, 734
PsuI	RGATCY	4 cut(s)	4, 53, 711, 754
RseI	CAYNNNNRTG	1 cut(s)	369
SacI	GAGCTC	1 cut(s)	663
SatI	GCNGC	1 cut(s)	435
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	2 cut(s)	379, 728
ScrFI	CCNGG	3 cut(s)	43, 63, 656
SduI	GDGCHC	1 cut(s)	663
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	4 cut(s)	49, 114, 241, 730
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	5 cut(s)	20, 207, 394, 565, 884
SsiI	CCGC	1 cut(s)	186
SspI	AATATT	1 cut(s)	446
SspMI	CTAG	7 cut(s)	326, 509, 701, 764, 783, 803, 904
SstI	GAGCTC	1 cut(s)	663
StyD4I	CCNGG	3 cut(s)	41, 61, 654
TaaI	ACNGT	2 cut(s)	321, 577
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	737
TasI	AATT	5 cut(s)	20, 207, 394, 565, 884
TfiI	GAWTC	1 cut(s)	779
TscAI	CASTG	2 cut(s)	673, 713
TseFI	GTSAC	2 cut(s)	571, 899
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	2 cut(s)	571, 899
TspDTI	ATGAA	5 cut(s)	95, 116, 467, 477, 528
TspRI	CASTG	2 cut(s)	673, 713
XagI	CCTNNNNNAGG	1 cut(s)	762
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	7 cut(s)	326, 509, 701, 764, 783, 803, 904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.