Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008701

Physical Location & Seq

Genomic Coordinates Reverse (-)

42191171 .. 42195971

Gene Structure 4801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG357700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGTAATGAACTTATGCTATGAAGATATGAAATGTTTTTTACTATCTTTTTTTTCAGGCCCAATAGTATTTATGAAGCGTTTTCCATACAAGGATATAAAGAGAGCTACAGATAGTTTTCATAGGATCATGTATTCCAACTCTCACGTAGCCGTCTACAAGGCCAGATTTCAAGATGGCGGGGTTGCTTTGATAAAAGAAATTAGAGATTTTAGTCAAGCAGAACATGTCTTCTACAGGGAAGTGCAACTCTTGGGGCGTCTGCATCATCGGCACCTTCTTGCTCTTAGGGGTTTCTCTATCGGAAATAAACGGTTGCTAGTGTTTGAAAATATAGAAAGAGGGAGCTTGAAGGAACATCTCAATGATCCCCTTAGGACTCCCTTGAATTGGAGGACAAGACTTAAAATAGCCGTTGGTGTGGTGGCAGCATTGGAATATTTGCTTCTTTTCAATGAACCCCCAATGTTTCATGTCTCCATTAGCTCAAGTAACATAATGCTAGATGAAAACTTCAATGCAAAGCTTTCAGACATGGGCTTTCAAAGTTCCGGTGAAAATTGCGTCACGGTGCCTCATACCTCATGTCCAAAAGATTGCATGGGTCAGGAATGTGGTAACATTATGTTCCAGCTTGGGGTGCTGATCCTGGAGCTCATCACTGGTCAATCATCTGAAAATGGGGGTGCTGATCTAGTTCAGTGGATCCGAGAGTCTCGCTTCCGCAGTTCGATTGACAATATGATAGATCCTGATCTAGGTAATAGTTATGATTCTAGGGAGCTTAGAAATCTTCTAGCTGTGGCAAAGTTGTGTGTTAAATCTGGGGATAAGTCAACGACTTCTATTCTGCATATACTCCGGTATCTCCAGAAAAAATTAGTTATTTCTCGTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

299

Amino Acids

34.16

Weight (kDa)

8.78

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	52 - 190	1.6e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	61 - 185	3.2e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22050 AT5G22050
fragaria_vesca	FvH4_3g26180 FvH4_3g26180 FvH4_3g26180 FvH4_3g26180 FvH4_3g26180
malus_domestica	MD03G1159200.v1.1
prunus_persica	Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1
pyrus_communis	pycom03g11150
rosa_chinensis	RchiOBHm_Chr5g0049031
rosa_laevigata	RLG00000034585
rosa_multiflora	Rmu_sc0004522.1_g000006
rosa_roxburghii	Rroxscaffold_1G00032840
rosa_rugosa	Rorug05G0242400
rosa_samantha	Rh5AG322300 Rh5BG332500 Rh5CG357700 Rh5DG344200
rosa_wichuraiana	Rw5G030410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	273, 571
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	2 cut(s)	180, 724
AclWI	GGATC	6 cut(s)	134, 362, 640, 700, 713, 743
AcyI	GRCGYC	1 cut(s)	259
AfiI	CCNNNNNNNGG	3 cut(s)	390, 637, 758
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	7 cut(s)	173, 329, 352, 388, 454, 517, 545
AjnI	CCWGG	1 cut(s)	648
AluBI	AGCT	8 cut(s)	107, 348, 486, 526, 634, 655, 784, 800
AluI	AGCT	8 cut(s)	107, 348, 486, 526, 634, 655, 784, 800
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	2 cut(s)	481, 720
AlwI	GGATC	6 cut(s)	134, 362, 640, 700, 713, 743
AoxI	GGCC	2 cut(s)	58, 162
ApeKI	GCWGC	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	566
AxyI	CCTNAGG	1 cut(s)	374
BaeI	ACNNNNGTAYC	2 cut(s)	848, 881
BamHI	GGATCC	1 cut(s)	705
BanI	GGYRCC	2 cut(s)	273, 571
BanII	GRGCYC	1 cut(s)	657
BauI	CACGAG	1 cut(s)	891
BbsI	GAAGAC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	657
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	2 cut(s)	137, 398
BciT130I	CCWGG	1 cut(s)	650
BcoDI	GTCTC	2 cut(s)	481, 720
BfaI	CTAG	7 cut(s)	320, 503, 695, 758, 777, 797, 898
BfmI	CTRYAG	2 cut(s)	108, 235
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	650
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	3 cut(s)	275, 573, 707
BmrFI	CCNGG	1 cut(s)	650
BmsI	GCATC	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	223
BpmI	CTGGAG	2 cut(s)	671, 854
BpuEI	CTTGAG	1 cut(s)	472
BsaAI	YACGTR	1 cut(s)	148
BsaBI	GATNNNNATC	1 cut(s)	753
BsaHI	GRCGYC	1 cut(s)	259
BsaWI	WCCGGW	2 cut(s)	551, 861
Bsc4I	CCNNNNNNNGG	3 cut(s)	390, 637, 758
Bse1I	ACTGG	1 cut(s)	667
Bse21I	CCTNAGG	1 cut(s)	374
Bse8I	GATNNNNATC	1 cut(s)	753
BseBI	CCWGG	1 cut(s)	650
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	3 cut(s)	390, 637, 758
BseNI	ACTGG	1 cut(s)	667
BseXI	GCAGC	1 cut(s)	440
BshFI	GGCC	2 cut(s)	60, 164
BshNI	GGYRCC	2 cut(s)	273, 571
BsiHKAI	GWGCWC	1 cut(s)	657
BsiSI	CCGG	2 cut(s)	552, 862
BslI	CCNNNNNNNGG	3 cut(s)	390, 637, 758
BsmAI	GTCTC	2 cut(s)	481, 720
BsnI	GGCC	2 cut(s)	60, 164
Bsp1286I	GDGCHC	1 cut(s)	657
Bsp143I	GATC	7 cut(s)	126, 367, 645, 691, 705, 748, 754
BspACI	CCGC	2 cut(s)	180, 724
BspANI	GGCC	2 cut(s)	60, 164
BspLI	GGNNCC	3 cut(s)	275, 573, 707
BspPI	GGATC	6 cut(s)	134, 362, 640, 700, 713, 743
BspT107I	GGYRCC	2 cut(s)	273, 571
BsrI	ACTGG	1 cut(s)	667
BssMI	GATC	7 cut(s)	126, 367, 645, 691, 705, 748, 754
BssNI	GRCGYC	1 cut(s)	259
BssSI	CACGAG	1 cut(s)	891
Bst2BI	CACGAG	1 cut(s)	891
Bst2UI	CCWGG	1 cut(s)	650
Bst4CI	ACNGT	2 cut(s)	315, 571
BstACI	GRCGYC	1 cut(s)	259
BstBAI	YACGTR	1 cut(s)	148
BstDEI	CTNAG	3 cut(s)	287, 374, 785
BstENI	CCTNNNNNAGG	1 cut(s)	756
BstKTI	GATC	7 cut(s)	129, 370, 648, 694, 708, 751, 757
BstMAI	GTCTC	2 cut(s)	481, 720
BstMBI	GATC	7 cut(s)	126, 367, 645, 691, 705, 748, 754
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 640
BstNI	CCWGG	1 cut(s)	650
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	648
BstSFI	CTRYAG	2 cut(s)	108, 235
BstV1I	GCAGC	1 cut(s)	440
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	2 cut(s)	705, 748
BstYI	RGATCY	2 cut(s)	705, 748
Bsu36I	CCTNAGG	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	60, 164
BtsIMutI	CAGTG	2 cut(s)	660, 707
Cfr13I	GGNCC	1 cut(s)	59
CseI	GACGC	2 cut(s)	248, 553
CviAII	CATG	6 cut(s)	130, 227, 473, 535, 585, 601
DdeI	CTNAG	3 cut(s)	287, 374, 785
DpnI	GATC	7 cut(s)	128, 369, 647, 693, 707, 750, 756
DpnII	GATC	7 cut(s)	126, 367, 645, 691, 705, 748, 754
Ecl136II	GAGCTC	1 cut(s)	655
Eco24I	GRGCYC	1 cut(s)	657
Eco53kI	GAGCTC	1 cut(s)	655
Eco81I	CCTNAGG	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	655
EcoNI	CCTNNNNNAGG	1 cut(s)	756
EcoRII	CCWGG	1 cut(s)	648
EcoT38I	GRGCYC	1 cut(s)	657
FaeI	CATG	6 cut(s)	133, 230, 476, 538, 588, 604
FatI	CATG	6 cut(s)	129, 226, 472, 534, 584, 600
FauI	CCCGC	1 cut(s)	173
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	429
FriOI	GRGCYC	1 cut(s)	657
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	7 cut(s)	320, 503, 695, 758, 777, 797, 898
GluI	GCNGC	1 cut(s)	429
GsuI	CTGGAG	2 cut(s)	671, 854
HaeIII	GGCC	2 cut(s)	60, 164
HapII	CCGG	2 cut(s)	552, 862
HgaI	GACGC	2 cut(s)	248, 553
Hin1I	GRCGYC	1 cut(s)	259
Hin1II	CATG	6 cut(s)	133, 230, 476, 538, 588, 604
HincII	GTYRAC	1 cut(s)	837
HindII	GTYRAC	1 cut(s)	837
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	3 cut(s)	379, 713, 773
HpaII	CCGG	2 cut(s)	552, 862
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	2 cut(s)	157, 837
Hpy188I	TCNGA	4 cut(s)	305, 532, 676, 710
Hpy188III	TCNNGA	5 cut(s)	173, 608, 752, 871, 893
Hpy8I	GTNNAC	2 cut(s)	157, 837
HpyAV	CCTTC	2 cut(s)	287, 346
HpyCH4III	ACNGT	2 cut(s)	315, 571
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	5 cut(s)	247, 265, 521, 600, 853
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 640
HpyF3I	CTNAG	3 cut(s)	287, 374, 785
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	259
Hsp92II	CATG	6 cut(s)	133, 230, 476, 538, 588, 604
Kzo9I	GATC	7 cut(s)	126, 367, 645, 691, 705, 748, 754
LmnI	GCTCC	3 cut(s)	345, 652, 781
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	7 cut(s)	320, 503, 695, 758, 777, 797, 898
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	4 cut(s)	491, 565, 617, 893
MalI	GATC	7 cut(s)	128, 369, 647, 693, 707, 750, 756
MboI	GATC	7 cut(s)	126, 367, 645, 691, 705, 748, 754
MboII	GAAGA	3 cut(s)	35, 223, 785
MflI	RGATCY	2 cut(s)	705, 748
MhlI	GDGCHC	1 cut(s)	657
MluCI	AATT	4 cut(s)	201, 388, 559, 878
MlyI	GAGTC	2 cut(s)	373, 722
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	4 cut(s)	335, 387, 585, 592
MseI	TTAA	2 cut(s)	405, 819
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	2 cut(s)	552, 862
MspR9I	CCNGG	1 cut(s)	650
MvaI	CCWGG	1 cut(s)	650
MwoI	GCNNNNNNNGC	2 cut(s)	271, 640
NdeII	GATC	7 cut(s)	126, 367, 645, 691, 705, 748, 754
NlaIII	CATG	6 cut(s)	133, 230, 476, 538, 588, 604
NlaIV	GGNNCC	3 cut(s)	275, 573, 707
NmuCI	GTSAC	2 cut(s)	565, 893
NspI	RCATGY	1 cut(s)	230
PciI	ACATGT	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	773
PfoI	TCCNGGA	1 cut(s)	648
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	2 cut(s)	373, 721
PpsI	GAGTC	2 cut(s)	373, 721
Ppu21I	YACGTR	1 cut(s)	148
PscI	ACATGT	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	657
Psp6I	CCWGG	1 cut(s)	648
PspGI	CCWGG	1 cut(s)	648
PspN4I	GGNNCC	3 cut(s)	275, 573, 707
PspPI	GGNCC	1 cut(s)	59
PsuI	RGATCY	2 cut(s)	705, 748
RseI	CAYNNNNRTG	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	657
SaqAI	TTAA	2 cut(s)	405, 819
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	7 cut(s)	126, 367, 645, 691, 705, 748, 754
Sau96I	GGNCC	1 cut(s)	59
SchI	GAGTC	2 cut(s)	373, 722
ScrFI	CCNGG	1 cut(s)	650
SduI	GDGCHC	1 cut(s)	657
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	2 cut(s)	108, 235
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
Sse9I	AATT	4 cut(s)	201, 388, 559, 878
SsiI	CCGC	2 cut(s)	180, 724
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	7 cut(s)	320, 503, 695, 758, 777, 797, 898
SstI	GAGCTC	1 cut(s)	657
StyD4I	CCNGG	1 cut(s)	648
TaaI	ACNGT	2 cut(s)	315, 571
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	731
TasI	AATT	4 cut(s)	201, 388, 559, 878
TfiI	GAWTC	1 cut(s)	773
Tru1I	TTAA	2 cut(s)	405, 819
Tru9I	TTAA	2 cut(s)	405, 819
TscAI	CASTG	2 cut(s)	667, 707
TseFI	GTSAC	2 cut(s)	565, 893
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	2 cut(s)	565, 893
TspDTI	ATGAA	8 cut(s)	23, 36, 44, 89, 110, 461, 471, 522
TspRI	CASTG	2 cut(s)	667, 707
XagI	CCTNNNNNAGG	1 cut(s)	756
XceI	RCATGY	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	7 cut(s)	320, 503, 695, 758, 777, 797, 898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.