Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008701

Physical Location & Seq

Genomic Coordinates Reverse (-)

47902724 .. 47907580

Gene Structure 4857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG322300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAAGCGTTTTCCATACAAGGATATAAAGAGAGCTACAGATAGTTTTCATAGGATCATGTATTCCAACTCTCATGTAGCTGTCTACAAGGCTAGATTTCAAGATGGCGGGGTTGCTTTGATAAAGGAAATTAGAGATTTTAGTCAAGCAGAACATGTCTTCTACAGGGAAGTGCAACTCTTGGGGCGTCTGCATCATCGGCACCTTCTTGCTCTTAGGGGTTTCTCTATCGGAAATAAACGGTTGCTAGTGTTTGAAAATATAGAAAGAGGGAGCTTGAAGGAACATCTCAATGATCCCCTTAGGACTCCCTTGAATTGGAGGACAAGACTTCAAATAGCCGTTGGTGTGGTGGCAGCATTGGAATATTTGCTTCTTTTCAATGAACCCCCAATGTTTCATGTCTCCATTAGCTCAAGTAACATAATGCTAGATGAAAACTTCAATGCAAAGCTTTCAGACATGGGTTTTCAAAGTTCCGGTGAAAATTGCGTCACGGTGCCTCATACCTCATGTCCAAAAGATTGCATGGGTCAGGAATGTGGTAACATTATGTTCCAGCTTGGGGTGCTGATCCTGGAGCTCATCACTGGTCAATCATCTGAAAATGGGGGTGCTGATCTAGTTCAGTGGATCCGAGAGTCTCGCTTCTGCAGTTCGATTGACAATATGATAGATCCTGATCTAGGTAATAGTTATGATTCTAGGGAGCTTAGAAATCTTCTAGCTGTGGCAAAGTTGTGTGTAAAATCTGGGGATAAGTCAACGACTTCTATTCTGCATATACTCCGATATCTCCAGAAAAAATTAGTTATTTCTCGTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

275

Amino Acids

31.29

Weight (kDa)

8.7

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	28 - 166	1.9e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	37 - 161	2e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22050 AT5G22050
fragaria_vesca	FvH4_3g26180 FvH4_3g26180 FvH4_3g26180 FvH4_3g26180 FvH4_3g26180
malus_domestica	MD03G1159200.v1.1
prunus_persica	Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1
pyrus_communis	pycom03g11150
rosa_chinensis	RchiOBHm_Chr5g0049031
rosa_laevigata	RLG00000034585
rosa_multiflora	Rmu_sc0004522.1_g000006
rosa_roxburghii	Rroxscaffold_1G00032840
rosa_rugosa	Rorug05G0242400
rosa_samantha	Rh5AG322300 Rh5BG332500 Rh5CG357700 Rh5DG344200
rosa_wichuraiana	Rw5G030410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	201, 499
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	6 cut(s)	62, 290, 568, 628, 641, 671
AcyI	GRCGYC	1 cut(s)	187
AfiI	CCNNNNNNNGG	3 cut(s)	318, 565, 686
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	8 cut(s)	101, 257, 280, 316, 335, 382, 445, 473
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	9 cut(s)	35, 80, 276, 414, 454, 562, 583, 712, 728
AluI	AGCT	9 cut(s)	35, 80, 276, 414, 454, 562, 583, 712, 728
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	2 cut(s)	409, 648
AlwI	GGATC	6 cut(s)	62, 290, 568, 628, 641, 671
ApeKI	GCWGC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	494
AxyI	CCTNAGG	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	633
BanI	GGYRCC	2 cut(s)	201, 499
BanII	GRGCYC	1 cut(s)	585
BauI	CACGAG	1 cut(s)	819
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	578
BcoDI	GTCTC	2 cut(s)	409, 648
BfaI	CTAG	8 cut(s)	93, 248, 431, 623, 686, 705, 725, 826
BfmI	CTRYAG	3 cut(s)	36, 163, 652
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	578
BmiI	GGNNCC	3 cut(s)	203, 501, 635
BmrFI	CCNGG	1 cut(s)	578
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	151
BpmI	CTGGAG	2 cut(s)	599, 782
BpuEI	CTTGAG	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	681
BsaHI	GRCGYC	1 cut(s)	187
BsaWI	WCCGGW	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	3 cut(s)	318, 565, 686
Bse1I	ACTGG	1 cut(s)	595
Bse21I	CCTNAGG	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	578
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	3 cut(s)	318, 565, 686
BseNI	ACTGG	1 cut(s)	595
BseXI	GCAGC	1 cut(s)	368
BshNI	GGYRCC	2 cut(s)	201, 499
BsiHKAI	GWGCWC	1 cut(s)	585
BsiSI	CCGG	1 cut(s)	480
BslI	CCNNNNNNNGG	3 cut(s)	318, 565, 686
BsmAI	GTCTC	2 cut(s)	409, 648
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	7 cut(s)	54, 295, 573, 619, 633, 676, 682
BspACI	CCGC	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	203, 501, 635
BspMAI	CTGCAG	1 cut(s)	656
BspPI	GGATC	6 cut(s)	62, 290, 568, 628, 641, 671
BspT107I	GGYRCC	2 cut(s)	201, 499
BsrI	ACTGG	1 cut(s)	595
BssMI	GATC	7 cut(s)	54, 295, 573, 619, 633, 676, 682
BssNI	GRCGYC	1 cut(s)	187
BssSI	CACGAG	1 cut(s)	819
Bst2BI	CACGAG	1 cut(s)	819
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	2 cut(s)	243, 499
BstACI	GRCGYC	1 cut(s)	187
BstDEI	CTNAG	3 cut(s)	215, 302, 713
BstENI	CCTNNNNNAGG	1 cut(s)	684
BstKTI	GATC	7 cut(s)	57, 298, 576, 622, 636, 679, 685
BstMAI	GTCTC	2 cut(s)	409, 648
BstMBI	GATC	7 cut(s)	54, 295, 573, 619, 633, 676, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 568
BstNI	CCWGG	1 cut(s)	578
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	576
BstSFI	CTRYAG	3 cut(s)	36, 163, 652
BstV1I	GCAGC	1 cut(s)	368
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	2 cut(s)	633, 676
BstYI	RGATCY	2 cut(s)	633, 676
Bsu36I	CCTNAGG	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	588, 635
CseI	GACGC	2 cut(s)	176, 481
CviAII	CATG	7 cut(s)	58, 74, 155, 401, 463, 513, 529
DdeI	CTNAG	3 cut(s)	215, 302, 713
DpnI	GATC	7 cut(s)	56, 297, 575, 621, 635, 678, 684
DpnII	GATC	7 cut(s)	54, 295, 573, 619, 633, 676, 682
Ecl136II	GAGCTC	1 cut(s)	583
Eco24I	GRGCYC	1 cut(s)	585
Eco32I	GATATC	1 cut(s)	794
Eco53kI	GAGCTC	1 cut(s)	583
Eco81I	CCTNAGG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	583
EcoNI	CCTNNNNNAGG	1 cut(s)	684
EcoRII	CCWGG	1 cut(s)	576
EcoRV	GATATC	1 cut(s)	794
EcoT38I	GRGCYC	1 cut(s)	585
FaeI	CATG	7 cut(s)	61, 77, 158, 404, 466, 516, 532
FatI	CATG	7 cut(s)	57, 73, 154, 400, 462, 512, 528
FauI	CCCGC	1 cut(s)	101
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	357
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	8 cut(s)	93, 248, 431, 623, 686, 705, 725, 826
GluI	GCNGC	1 cut(s)	357
GsuI	CTGGAG	2 cut(s)	599, 782
HapII	CCGG	1 cut(s)	480
HgaI	GACGC	2 cut(s)	176, 481
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	7 cut(s)	61, 77, 158, 404, 466, 516, 532
HincII	GTYRAC	1 cut(s)	765
HindII	GTYRAC	1 cut(s)	765
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	3 cut(s)	307, 641, 701
HpaII	CCGG	1 cut(s)	480
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	2 cut(s)	85, 765
Hpy188I	TCNGA	5 cut(s)	233, 460, 604, 638, 791
Hpy188III	TCNNGA	5 cut(s)	101, 536, 680, 799, 821
Hpy8I	GTNNAC	2 cut(s)	85, 765
HpyAV	CCTTC	2 cut(s)	215, 274
HpyCH4III	ACNGT	2 cut(s)	243, 499
HpyCH4V	TGCA	6 cut(s)	175, 193, 449, 528, 654, 781
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 568
HpyF3I	CTNAG	3 cut(s)	215, 302, 713
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	7 cut(s)	61, 77, 158, 404, 466, 516, 532
Kzo9I	GATC	7 cut(s)	54, 295, 573, 619, 633, 676, 682
LmnI	GCTCC	3 cut(s)	273, 580, 709
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	8 cut(s)	93, 248, 431, 623, 686, 705, 725, 826
MaeIII	GTNAC	4 cut(s)	419, 493, 545, 821
MalI	GATC	7 cut(s)	56, 297, 575, 621, 635, 678, 684
MboI	GATC	7 cut(s)	54, 295, 573, 619, 633, 676, 682
MboII	GAAGA	2 cut(s)	151, 713
MflI	RGATCY	2 cut(s)	633, 676
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	4 cut(s)	129, 316, 487, 806
MlyI	GAGTC	2 cut(s)	301, 650
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	4 cut(s)	263, 315, 513, 520
MslI	CAYNNNNRTG	1 cut(s)	291
MspI	CCGG	1 cut(s)	480
MspR9I	CCNGG	1 cut(s)	578
MvaI	CCWGG	1 cut(s)	578
MwoI	GCNNNNNNNGC	2 cut(s)	199, 568
NdeII	GATC	7 cut(s)	54, 295, 573, 619, 633, 676, 682
NlaIII	CATG	7 cut(s)	61, 77, 158, 404, 466, 516, 532
NlaIV	GGNNCC	3 cut(s)	203, 501, 635
NmuCI	GTSAC	2 cut(s)	493, 821
NspI	RCATGY	1 cut(s)	158
PciI	ACATGT	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	701
PfoI	TCCNGGA	1 cut(s)	576
PkrI	GCNGC	1 cut(s)	358
PleI	GAGTC	2 cut(s)	301, 649
PpsI	GAGTC	2 cut(s)	301, 649
PscI	ACATGT	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	585
Psp6I	CCWGG	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	3 cut(s)	203, 501, 635
PstI	CTGCAG	1 cut(s)	656
PsuI	RGATCY	2 cut(s)	633, 676
RseI	CAYNNNNRTG	1 cut(s)	291
SacI	GAGCTC	1 cut(s)	585
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	7 cut(s)	54, 295, 573, 619, 633, 676, 682
SchI	GAGTC	2 cut(s)	301, 650
ScrFI	CCNGG	1 cut(s)	578
SduI	GDGCHC	1 cut(s)	585
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	3 cut(s)	36, 163, 652
SmiMI	CAYNNNNRTG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
Sse9I	AATT	4 cut(s)	129, 316, 487, 806
SsiI	CCGC	1 cut(s)	108
SspI	AATATT	1 cut(s)	368
SspMI	CTAG	8 cut(s)	93, 248, 431, 623, 686, 705, 725, 826
SstI	GAGCTC	1 cut(s)	585
StyD4I	CCNGG	1 cut(s)	576
TaaI	ACNGT	2 cut(s)	243, 499
TaqI	TCGA	1 cut(s)	659
TasI	AATT	4 cut(s)	129, 316, 487, 806
TfiI	GAWTC	1 cut(s)	701
TscAI	CASTG	2 cut(s)	595, 635
TseFI	GTSAC	2 cut(s)	493, 821
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	2 cut(s)	493, 821
TspDTI	ATGAA	5 cut(s)	17, 38, 389, 399, 450
TspRI	CASTG	2 cut(s)	595, 635
XagI	CCTNNNNNAGG	1 cut(s)	684
XceI	RCATGY	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	8 cut(s)	93, 248, 431, 623, 686, 705, 725, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.