Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008701

Physical Location & Seq

Genomic Coordinates Forward (+)

47180272 .. 47184326

Gene Structure 4055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGATCTCTCCGTCCCCAAATTCCGATCTCGTCTCCTCGCCTGGCTCTGCAGATCTCGTCCCGGCCCAATAGTATTTATGAAGCGTTTTCCATACAAGGATATAAAGAGAGCTACAGATAGTTTTCATAGGATCATGTATTCCAACTCTCACGTAGCTGTCTACAAGGCCAGATTTCAAGATGGTGGGGTTGCTTTGATAAAAGAAATTAGAGATTTTAGTCAAGCAGAACATGTCTTCTACAGGGAAGTGCAACTCTTGGGGCGTCTGCATCATCGGCACCTTCTTGCTCTTAGGGGTTTCTCTATCGGAAATAAACGCTTGCTTGTGTTTGAAAATATAGAAAGAGGGAGCTTGAAGGAACATCTTAATGATCCCCTTAGGACTCCCTTGAATTGGAGGACAAGACTTCAAATAGCCGTTGGTGTGGTGGCAGCATTGGAATATTTGCTTCTTTTCAATGAACCCCCAATGTTTCATGTCTCCATTAGCTCAAGTAACATAATGCTAGATGAAAACTTCAATGCAAAGCTTTCAGACATGGGCTTTCAAAGTTCCGGTGAAAATTGTGTCATGGTGCCTCATACCTCATGTCCAAAAGTCGTGCAGATTGCATGGGTCAGGAATGTGGTAACATTATGTTCCAGCTTGGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

219

Amino Acids

25.14

Weight (kDa)

9.78

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	54 - 189	2.6e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	62 - 188	9.4e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22050 AT5G22050
fragaria_vesca	FvH4_3g26180 FvH4_3g26180 FvH4_3g26180 FvH4_3g26180 FvH4_3g26180
malus_domestica	MD03G1159200.v1.1
prunus_persica	Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1 Prupe.6G147000_v2.0.a1
pyrus_communis	pycom03g11150
rosa_chinensis	RchiOBHm_Chr5g0049031
rosa_laevigata	RLG00000034585
rosa_multiflora	Rmu_sc0004522.1_g000006
rosa_roxburghii	Rroxscaffold_1G00032840
rosa_rugosa	Rorug05G0242400
rosa_samantha	Rh5AG322300 Rh5BG332500 Rh5CG357700 Rh5DG344200
rosa_wichuraiana	Rw5G030410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	279, 577
AccI	GTMKAC	1 cut(s)	162
AclWI	GGATC	3 cut(s)	12, 140, 368
AcsI	RAATTY	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	265
AfiI	CCNNNNNNNGG	2 cut(s)	396, 651
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	8 cut(s)	179, 335, 358, 394, 413, 460, 523, 551
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	6 cut(s)	113, 158, 354, 492, 532, 648
AluI	AGCT	6 cut(s)	113, 158, 354, 492, 532, 648
Alw26I	GTCTC	2 cut(s)	38, 487
AlwI	GGATC	3 cut(s)	12, 140, 368
AoxI	GGCC	2 cut(s)	64, 168
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	572
AxyI	CCTNAGG	1 cut(s)	380
BanI	GGYRCC	2 cut(s)	279, 577
BbsI	GAAGAC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	38, 487
BfaI	CTAG	1 cut(s)	509
BfmI	CTRYAG	3 cut(s)	49, 114, 241
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
Bme1390I	CCNGG	2 cut(s)	43, 63
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	281, 579
BmrFI	CCNGG	2 cut(s)	43, 63
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	478
BpuMI	CCSGG	1 cut(s)	63
BsaAI	YACGTR	1 cut(s)	154
BsaHI	GRCGYC	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	2 cut(s)	396, 651
Bse21I	CCTNAGG	1 cut(s)	380
BseBI	CCWGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	396, 651
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	446
BsgI	GTGCAG	1 cut(s)	626
BshFI	GGCC	2 cut(s)	66, 170
BshNI	GGYRCC	2 cut(s)	279, 577
BsiSI	CCGG	2 cut(s)	63, 558
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	2 cut(s)	396, 651
BsmAI	GTCTC	2 cut(s)	38, 487
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	2 cut(s)	66, 170
Bsp143I	GATC	5 cut(s)	4, 26, 53, 132, 373
BspANI	GGCC	2 cut(s)	66, 170
BspLI	GGNNCC	2 cut(s)	281, 579
BspMAI	CTGCAG	1 cut(s)	53
BspPI	GGATC	3 cut(s)	12, 140, 368
BspT107I	GGYRCC	2 cut(s)	279, 577
BssMI	GATC	5 cut(s)	4, 26, 53, 132, 373
BssNI	GRCGYC	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	43
BstACI	GRCGYC	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	2 cut(s)	293, 380
BstKTI	GATC	5 cut(s)	7, 29, 56, 135, 376
BstMAI	GTCTC	2 cut(s)	38, 487
BstMBI	GATC	5 cut(s)	4, 26, 53, 132, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 654
BstNI	CCWGG	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	41, 61
BstSFI	CTRYAG	3 cut(s)	49, 114, 241
BstV1I	GCAGC	1 cut(s)	446
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	2 cut(s)	4, 53
BstYI	RGATCY	2 cut(s)	4, 53
Bsu36I	CCTNAGG	1 cut(s)	380
BsuRI	GGCC	2 cut(s)	66, 170
Cac8I	GCNNGC	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	65
CseI	GACGC	1 cut(s)	254
CviAII	CATG	7 cut(s)	136, 233, 479, 541, 574, 591, 615
DdeI	CTNAG	2 cut(s)	293, 380
DpnI	GATC	5 cut(s)	6, 28, 55, 134, 375
DpnII	GATC	5 cut(s)	4, 26, 53, 132, 373
Eco81I	CCTNAGG	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	41
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	7 cut(s)	139, 236, 482, 544, 577, 594, 618
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	7 cut(s)	135, 232, 478, 540, 573, 590, 614
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	435
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	1 cut(s)	509
GluI	GCNGC	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	66, 170
HapII	CCGG	2 cut(s)	63, 558
HgaI	GACGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	7 cut(s)	139, 236, 482, 544, 577, 594, 618
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	1 cut(s)	385
HpaII	CCGG	2 cut(s)	63, 558
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	3 cut(s)	26, 311, 538
Hpy188III	TCNNGA	2 cut(s)	179, 622
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	293, 352
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	6 cut(s)	51, 253, 271, 527, 607, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 654
HpyF3I	CTNAG	2 cut(s)	293, 380
HpySE526I	ACGT	1 cut(s)	153
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	7 cut(s)	139, 236, 482, 544, 577, 594, 618
Kzo9I	GATC	5 cut(s)	4, 26, 53, 132, 373
LmnI	GCTCC	1 cut(s)	351
LpnPI	CCDG	7 cut(s)	28, 55, 76, 184, 229, 571, 607
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	497, 631
MalI	GATC	5 cut(s)	6, 28, 55, 134, 375
MboI	GATC	5 cut(s)	4, 26, 53, 132, 373
MboII	GAAGA	1 cut(s)	229
MflI	RGATCY	2 cut(s)	4, 53
MluCI	AATT	4 cut(s)	20, 207, 394, 565
MlyI	GAGTC	1 cut(s)	379
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	5 cut(s)	47, 341, 393, 591, 598
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	369
MspI	CCGG	2 cut(s)	63, 558
MspR9I	CCNGG	2 cut(s)	43, 63
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	2 cut(s)	277, 654
NciI	CCSGG	1 cut(s)	63
NdeII	GATC	5 cut(s)	4, 26, 53, 132, 373
NlaIII	CATG	7 cut(s)	139, 236, 482, 544, 577, 594, 618
NlaIV	GGNNCC	2 cut(s)	281, 579
NspI	RCATGY	1 cut(s)	236
PciI	ACATGT	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	436
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Ppu21I	YACGTR	1 cut(s)	154
PscI	ACATGT	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	281, 579
PspPI	GGNCC	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	4, 53
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	5 cut(s)	4, 26, 53, 132, 373
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	2 cut(s)	43, 63
SetI	ASST	9 cut(s)	115, 156, 160, 285, 356, 494, 534, 590, 650
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	3 cut(s)	49, 114, 241
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	4 cut(s)	20, 207, 394, 565
SspI	AATATT	1 cut(s)	446
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	2 cut(s)	41, 61
TaiI	ACGT	1 cut(s)	156
TasI	AATT	4 cut(s)	20, 207, 394, 565
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseI	GCWGC	1 cut(s)	434
TspDTI	ATGAA	5 cut(s)	95, 116, 467, 477, 528
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.