FvH4_3g26230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010096
Physical Location & Seq
Reverse (-)
19169201 .. 19176878
7678 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26230.t2

Sequence Viewer

Length: 348 bp
ATGGACGAAGGTGAATTTCGACGCCTTCTCCTTCTTTTCCCAGTCGTCCGATCTCGTGATTACCATGCTGAATCAGAGAAATCTAAAGAGTCAACTTCTAAGTCAGCAGAATCTGAAGCGCTAAAGGAATGGCATGATGCATGGGATGATGGAGAGAAAAAAGACATGGAGAAGGAAACACGTGATGGACATGATGCATTCTGGGAGAAGCTAAAGTTGGTTGCTGAGAGAAAGGTGGGTGCCACGGAAGCAGAAAGATTTTGCAAGGCATTCCAACGAGTTCATAAGAAACTGGTGTATGAAGAACTGAGTCCGGATGCTGCCAAGACTTTTCTGAGCTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.4

Weight (kDa)

5.63

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12240 AT5G12240
fragaria_vesca FvH4_3g26230 FvH4_3g26230
malus_domestica MD11G1174500.v1.1
prunus_persica Prupe.6G146500_v2.0.a1
pyrus_communis pycom11g14920
rosa_chinensis RchiOBHm_Chr5g0048901
rosa_laevigata RLG00000034561
rosa_multiflora Rmu_sc0003628.1_g000025
rosa_roxburghii Rroxscaffold_1G00032990
rosa_rugosa Rorug05G0241300 Rorug05G0241400
rosa_samantha Rh5AG321200 Rh5AG323400 Rh5BG331600 Rh5CG357000 Rh5DG343200
rosa_wichuraiana Rw5G030100 Rw5G030300 Rw5G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AccIII TCCGGA 1 cut(s) 313
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 135
AcvI CACGTG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 22
AfeI AGCGCT 1 cut(s) 120
AflIII ACRYGT 1 cut(s) 179
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 2 cut(s) 211, 339
AluI AGCT 2 cut(s) 211, 339
Alw21I GWGCWC 1 cut(s) 341
AlwNI CAGNNNCTG 1 cut(s) 113
Aor13HI TCCGGA 1 cut(s) 313
Aor51HI AGCGCT 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 1 cut(s) 14
AspLEI GCGC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 23
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 341
BauI CACGAG 1 cut(s) 54
BbrPI CACGTG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 307
BccI CCATC 2 cut(s) 143, 179
BfoI RGCGCY 1 cut(s) 122
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 241
BmrI ACTGGG 1 cut(s) 35
BmsI GCATC 3 cut(s) 127, 184, 307
BmuI ACTGGG 1 cut(s) 35
BsaAI YACGTR 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 313
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bse1I ACTGG 2 cut(s) 41, 297
BseAI TCCGGA 1 cut(s) 313
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 2 cut(s) 151, 322
BseMII CTCAG 3 cut(s) 216, 299, 326
BseNI ACTGG 2 cut(s) 41, 297
BseXI GCAGC 1 cut(s) 307
BshNI GGYRCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 341
BsiSI CCGG 1 cut(s) 314
BsmI GAATGC 2 cut(s) 197, 269
Bsp1286I GDGCHC 1 cut(s) 341
Bsp13I TCCGGA 1 cut(s) 313
Bsp143I GATC 1 cut(s) 50
BspCNI CTCAG 3 cut(s) 217, 300, 327
BspEI TCCGGA 1 cut(s) 313
BspHI TCATGA 1 cut(s) 344
BspLI GGNNCC 1 cut(s) 241
BspT107I GGYRCC 1 cut(s) 239
BsrI ACTGG 2 cut(s) 41, 297
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 1 cut(s) 50
BssNI GRCGYC 1 cut(s) 22
BssSI CACGAG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 22
BstBAI YACGTR 1 cut(s) 182
BstDEI CTNAG 4 cut(s) 99, 225, 308, 335
BstDSI CCRYGG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 151, 322
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 1 cut(s) 53
BstMBI GATC 1 cut(s) 50
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 307
BtgI CCRYGG 1 cut(s) 243
BtsCI GGATG 2 cut(s) 151, 322
CaiI CAGNNNCTG 1 cut(s) 113
CciI TCATGA 1 cut(s) 344
CfoI GCGC 1 cut(s) 121
CseI GACGC 1 cut(s) 30
CviAII CATG 6 cut(s) 65, 134, 141, 166, 191, 345
CviJI RGCY 2 cut(s) 211, 339
CviKI_1 RGCY 2 cut(s) 211, 339
DdeI CTNAG 4 cut(s) 99, 225, 308, 335
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
Ecl136II GAGCTC 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 341
Eco47III AGCGCT 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 135
Eco72I CACGTG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 339
EcoT22I ATGCAT 2 cut(s) 142, 199
EcoT38I GRGCYC 1 cut(s) 341
FaeI CATG 6 cut(s) 68, 137, 144, 169, 194, 348
FaiI YATR 8 cut(s) 66, 135, 142, 167, 192, 285, 300, 346
FatI CATG 6 cut(s) 64, 133, 140, 165, 190, 344
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 2 cut(s) 158, 329
FriOI GRGCYC 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 321
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 321
HaeII RGCGCY 1 cut(s) 122
HapII CCGG 1 cut(s) 314
HgaI GACGC 1 cut(s) 30
HhaI GCGC 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 6 cut(s) 68, 137, 144, 169, 194, 348
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HinfI GANTC 4 cut(s) 71, 89, 110, 310
HpaII CCGG 1 cut(s) 314
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 4 cut(s) 50, 76, 115, 336
Hpy188III TCNNGA 3 cut(s) 56, 314, 345
Hpy8I GTNNAC 1 cut(s) 93
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 3 cut(s) 35, 41, 166
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 3 cut(s) 140, 197, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 4 cut(s) 99, 225, 308, 335
HpySE526I ACGT 1 cut(s) 181
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 6 cut(s) 68, 137, 144, 169, 194, 348
HspAI GCGC 1 cut(s) 119
Kpn2I TCCGGA 1 cut(s) 313
Kzo9I GATC 1 cut(s) 50
LpnPI CCDG 4 cut(s) 54, 187, 278, 327
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 3 cut(s) 127, 184, 307
MaeII ACGT 1 cut(s) 181
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MboII GAAGA 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 341
MluCI AATT 1 cut(s) 14
MlyI GAGTC 2 cut(s) 98, 319
MmeI TCCRAC 1 cut(s) 298
Mph1103I ATGCAT 2 cut(s) 142, 199
MroI TCCGGA 1 cut(s) 313
MspI CCGG 1 cut(s) 314
Mva1269I GAATGC 2 cut(s) 197, 269
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeII GATC 1 cut(s) 50
NlaIII CATG 6 cut(s) 68, 137, 144, 169, 194, 348
NlaIV GGNNCC 1 cut(s) 241
NsiI ATGCAT 2 cut(s) 142, 199
PagI TCATGA 1 cut(s) 344
PctI GAATGC 2 cut(s) 197, 269
PfeI GAWTC 2 cut(s) 71, 110
PkrI GCNGC 1 cut(s) 322
PleI GAGTC 2 cut(s) 97, 318
PmaCI CACGTG 1 cut(s) 182
PmlI CACGTG 1 cut(s) 182
PpsI GAGTC 2 cut(s) 97, 318
Ppu21I YACGTR 1 cut(s) 182
Psp124BI GAGCTC 1 cut(s) 341
PspCI CACGTG 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 341
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 50
SchI GAGTC 2 cut(s) 98, 319
SduI GDGCHC 1 cut(s) 341
SetI ASST 5 cut(s) 13, 184, 213, 237, 341
SfaNI GCATC 3 cut(s) 127, 184, 307
Sse9I AATT 1 cut(s) 14
SstI GAGCTC 1 cut(s) 341
TaiI ACGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 19
TasI AATT 1 cut(s) 14
TfiI GAWTC 2 cut(s) 71, 110
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 272, 315
TspGWI ACGGA 1 cut(s) 260
XapI RAATTY 1 cut(s) 14
Zsp2I ATGCAT 2 cut(s) 142, 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.