Prupe.6G146500_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
12132476 .. 12138336
5861 bp
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UTR
Exon/CDS
Intron
Prupe.6G146500.1

Sequence Viewer

Length: 348 bp
ATGGACGAGGCTGAATTCCGACGCCTTCTCGATCTCTTCCCAATAGTCCGATCTCGCGACCACCATGCTGAATTAGAGCAATCTAAAGAATCAACTTCTAAGTCAGCCCAGTACGAAGAGGTGAAAGAATGGCAGGATGCATGGGATGAGGGAGATAAAAAAGAAGTGGAGAAGCAAGGACTTGACCAACATGGTGCATTTTGGGAGAAGCTAAAGTTGGTTGCTGAGAGAAAGGTGGGTGAAGCAGAAGCGGAGAGATTTTGCAAGGCATTTCAACAAATTCATAAGAAACTCGTCTATGAAGAACTGAGTTTGGATGCTGCCCAGAAATTCCTGAACTCGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.53

Weight (kDa)

5.16

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010096)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 57
AciI CCGC 1 cut(s) 251
AcsI RAATTY 3 cut(s) 14, 279, 329
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 1 cut(s) 113
AgsI TTSAA 1 cut(s) 275
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 3 cut(s) 14, 279, 329
AsuHPI GGTGA 2 cut(s) 133, 251
BbvI GCAGC 1 cut(s) 307
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BmrI ACTGGG 1 cut(s) 103
BmsI GCATC 2 cut(s) 127, 307
BmuI ACTGGG 1 cut(s) 103
BsaHI GRCGYC 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 109
BseGI GGATG 3 cut(s) 142, 151, 322
BseMII CTCAG 2 cut(s) 216, 299
BseNI ACTGG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 307
Bsh1236I CGCG 1 cut(s) 57
Bsp143I GATC 2 cut(s) 31, 50
Bsp68I TCGCGA 1 cut(s) 57
BspACI CCGC 1 cut(s) 251
BspCNI CTCAG 2 cut(s) 217, 300
BspFNI CGCG 1 cut(s) 57
BsrI ACTGG 1 cut(s) 109
BssMI GATC 2 cut(s) 31, 50
BssNI GRCGYC 1 cut(s) 22
Bst6I CTCTTC 2 cut(s) 41, 111
BstACI GRCGYC 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 99, 225, 308
BstF5I GGATG 3 cut(s) 142, 151, 322
BstFNI CGCG 1 cut(s) 57
BstKTI GATC 2 cut(s) 34, 53
BstMBI GATC 2 cut(s) 31, 50
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 307
BtsCI GGATG 3 cut(s) 142, 151, 322
BtuMI TCGCGA 1 cut(s) 57
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 112
CviAII CATG 3 cut(s) 65, 141, 191
CviJI RGCY 3 cut(s) 11, 107, 211
CviKI_1 RGCY 3 cut(s) 11, 107, 211
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 3 cut(s) 99, 225, 308
DpnI GATC 2 cut(s) 33, 52
DpnII GATC 2 cut(s) 31, 50
Eam1104I CTCTTC 2 cut(s) 41, 111
EarI CTCTTC 2 cut(s) 41, 111
EcoRI GAATTC 1 cut(s) 14
EcoT22I ATGCAT 1 cut(s) 142
FaeI CATG 3 cut(s) 68, 144, 194
FaiI YATR 5 cut(s) 66, 142, 192, 285, 300
FatI CATG 3 cut(s) 64, 140, 190
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 3 cut(s) 149, 158, 329
Fsp4HI GCNGC 1 cut(s) 321
GluI GCNGC 1 cut(s) 321
HgaI GACGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 3 cut(s) 68, 144, 194
HinfI GANTC 1 cut(s) 89
HphI GGTGA 2 cut(s) 133, 251
Hpy188I TCNGA 2 cut(s) 20, 50
Hpy188III TCNNGA 4 cut(s) 29, 56, 334, 345
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 1 cut(s) 35
HpyCH4V TGCA 3 cut(s) 140, 197, 264
HpyF3I CTNAG 3 cut(s) 99, 225, 308
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 3 cut(s) 68, 144, 194
Kzo9I GATC 2 cut(s) 31, 50
LpnPI CCDG 3 cut(s) 119, 122, 338
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 2 cut(s) 127, 307
MalI GATC 2 cut(s) 33, 52
MboI GATC 2 cut(s) 31, 50
MboII GAAGA 3 cut(s) 28, 128, 314
MluCI AATT 4 cut(s) 14, 71, 279, 329
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 2 cut(s) 112, 142
Mph1103I ATGCAT 1 cut(s) 142
MvnI CGCG 1 cut(s) 57
NdeII GATC 2 cut(s) 31, 50
NlaIII CATG 3 cut(s) 68, 144, 194
NruI TCGCGA 1 cut(s) 57
NsiI ATGCAT 1 cut(s) 142
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 1 cut(s) 322
RruI TCGCGA 1 cut(s) 57
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 2 cut(s) 31, 50
SetI ASST 3 cut(s) 123, 213, 237
SfaNI GCATC 2 cut(s) 127, 307
Sse9I AATT 4 cut(s) 14, 71, 279, 329
SsiI CCGC 1 cut(s) 251
TaqI TCGA 1 cut(s) 30
TasI AATT 4 cut(s) 14, 71, 279, 329
TfiI GAWTC 1 cut(s) 89
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 272, 315
XapI RAATTY 3 cut(s) 14, 279, 329
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.