Rmu_sc0003628.1_g000025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003628.1
OG0010096
Physical Location & Seq
Forward (+)
67425 .. 71826
4402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003628.1_g000025.1.cds

Sequence Viewer

Length: 423 bp
atggacgaagctgaatttcgacgccttctccttcttttccctgtcgtccgatctcgtgactaccatgctgaatcagagcaatctagagagtcaacttctaagtcagcagaatctgaagcgctaaaagaatggcaggatgcatgggatgagggagagaaaatagacgtggagaaggaaacacgtgatgtacatgatgcattttgggagaaactaaagttggttgctgagagaaagaatgcattttcttatctttattcagtactgtatgcatatggtgattttagattacatatatctatgcctgatatgtgtcccaatttcatcattgctcatgtcaacctttatccattggaaaatttagtcccatctacgattgaaaataataattattctagatgcctaggtatggagaaatgggtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

16.54

Weight (kDa)

4.93

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12240 AT5G12240
fragaria_vesca FvH4_3g26230 FvH4_3g26230
malus_domestica MD11G1174500.v1.1
prunus_persica Prupe.6G146500_v2.0.a1
pyrus_communis pycom11g14920
rosa_chinensis RchiOBHm_Chr5g0048901
rosa_laevigata RLG00000034561
rosa_multiflora Rmu_sc0003628.1_g000025
rosa_roxburghii Rroxscaffold_1G00032990
rosa_rugosa Rorug05G0241300 Rorug05G0241400
rosa_samantha Rh5AG321200 Rh5AG323400 Rh5BG331600 Rh5CG357000 Rh5DG343200
rosa_wichuraiana Rw5G030100 Rw5G030300 Rw5G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 14, 355
AcuI CTGAAG 1 cut(s) 135
AcvI CACGTG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 2 cut(s) 189, 261
AfeI AGCGCT 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 406
AflIII ACRYGT 1 cut(s) 179
AgsI TTSAA 1 cut(s) 377
AjiI CACGTC 1 cut(s) 166
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
AlwNI CAGNNNCTG 1 cut(s) 113
Aor51HI AGCGCT 1 cut(s) 120
ApoI RAATTY 2 cut(s) 14, 355
AspA2I CCTAGG 1 cut(s) 400
AspLEI GCGC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 287
AvrII CCTAGG 1 cut(s) 400
BauI CACGAG 1 cut(s) 54
BbrPI CACGTG 1 cut(s) 182
BccI CCATC 1 cut(s) 373
BfaI CTAG 3 cut(s) 84, 393, 401
BfoI RGCGCY 1 cut(s) 122
BlnI CCTAGG 1 cut(s) 400
BmcAI AGTACT 1 cut(s) 261
BmgBI CACGTC 1 cut(s) 166
BmsI GCATC 3 cut(s) 127, 184, 386
BsaAI YACGTR 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 400
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse3DI GCAATG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 400
BseGI GGATG 2 cut(s) 142, 151
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 216
BslFI GGGAC 2 cut(s) 297, 347
BslI CCNNNNNNNGG 1 cut(s) 406
BsmFI GGGAC 2 cut(s) 297, 347
BsmI GAATGC 1 cut(s) 241
Bsp1407I TGTACA 1 cut(s) 187
Bsp143I GATC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 324
BsrGI TGTACA 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 400
BssMI GATC 1 cut(s) 50
BssNI GRCGYC 1 cut(s) 22
BssSI CACGAG 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 400
Bst2BI CACGAG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 264
BstACI GRCGYC 1 cut(s) 22
BstAUI TGTACA 1 cut(s) 187
BstBAI YACGTR 1 cut(s) 182
BstDEI CTNAG 2 cut(s) 99, 225
BstF5I GGATG 2 cut(s) 142, 151
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 1 cut(s) 53
BstMBI GATC 1 cut(s) 50
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 2 cut(s) 142, 151
CaiI CAGNNNCTG 1 cut(s) 113
CfoI GCGC 1 cut(s) 121
CseI GACGC 1 cut(s) 30
Csp6I GTAC 2 cut(s) 188, 260
CviAII CATG 4 cut(s) 65, 141, 191, 332
CviJI RGCY 1 cut(s) 11
CviKI_1 RGCY 1 cut(s) 11
CviQI GTAC 2 cut(s) 188, 260
DdeI CTNAG 2 cut(s) 99, 225
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 400
Eco47III AGCGCT 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 135
Eco72I CACGTG 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 400
EcoT22I ATGCAT 4 cut(s) 142, 199, 241, 271
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 4 cut(s) 68, 144, 194, 335
FaqI GGGAC 2 cut(s) 297, 347
FatI CATG 4 cut(s) 64, 140, 190, 331
FauNDI CATATG 1 cut(s) 271
FokI GGATG 2 cut(s) 149, 158
FspBI CTAG 3 cut(s) 84, 393, 401
GlaI GCGC 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 122
HgaI GACGC 1 cut(s) 30
HhaI GCGC 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 4 cut(s) 68, 144, 194, 335
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HincII GTYRAC 2 cut(s) 93, 337
HindII GTYRAC 2 cut(s) 93, 337
HinfI GANTC 3 cut(s) 71, 89, 110
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 2 cut(s) 93, 337
Hpy188I TCNGA 3 cut(s) 50, 76, 115
Hpy188III TCNNGA 3 cut(s) 56, 84, 393
Hpy8I GTNNAC 2 cut(s) 93, 337
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 3 cut(s) 35, 41, 166
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4IV ACGT 2 cut(s) 165, 181
HpyCH4V TGCA 4 cut(s) 140, 197, 239, 269
HpyF3I CTNAG 2 cut(s) 99, 225
HpySE526I ACGT 2 cut(s) 165, 181
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 4 cut(s) 68, 144, 194, 335
HspAI GCGC 1 cut(s) 119
Kzo9I GATC 1 cut(s) 50
LpnPI CCDG 3 cut(s) 54, 119, 315
LweI GCATC 3 cut(s) 127, 184, 386
MaeI CTAG 3 cut(s) 84, 393, 401
MaeII ACGT 2 cut(s) 165, 181
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MluCI AATT 4 cut(s) 14, 316, 355, 385
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 1 cut(s) 142
Mph1103I ATGCAT 4 cut(s) 142, 199, 241, 271
Mva1269I GAATGC 1 cut(s) 241
NdeI CATATG 1 cut(s) 271
NdeII GATC 1 cut(s) 50
NlaIII CATG 4 cut(s) 68, 144, 194, 335
NmuCI GTSAC 1 cut(s) 56
NsiI ATGCAT 4 cut(s) 142, 199, 241, 271
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 2 cut(s) 71, 110
PleI GAGTC 1 cut(s) 97
PmaCI CACGTG 1 cut(s) 182
PmlI CACGTG 1 cut(s) 182
PpsI GAGTC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 182
PspCI CACGTG 1 cut(s) 182
PstNI CAGNNNCTG 1 cut(s) 113
RsaI GTAC 2 cut(s) 189, 261
RsaNI GTAC 2 cut(s) 188, 260
Sau3AI GATC 1 cut(s) 50
ScaI AGTACT 1 cut(s) 261
SchI GAGTC 1 cut(s) 98
SetI ASST 5 cut(s) 13, 168, 184, 342, 406
SfaNI GCATC 3 cut(s) 127, 184, 386
Sse9I AATT 4 cut(s) 14, 316, 355, 385
SspMI CTAG 3 cut(s) 84, 393, 401
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 1 cut(s) 264
TaiI ACGT 2 cut(s) 168, 184
TaqI TCGA 1 cut(s) 19
TasI AATT 4 cut(s) 14, 316, 355, 385
TatI WGTACW 2 cut(s) 187, 259
TfiI GAWTC 2 cut(s) 71, 110
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 310
XapI RAATTY 2 cut(s) 14, 355
XbaI TCTAGA 2 cut(s) 83, 392
XmaJI CCTAGG 1 cut(s) 400
XspI CTAG 3 cut(s) 84, 393, 401
ZrmI AGTACT 1 cut(s) 261
Zsp2I ATGCAT 4 cut(s) 142, 199, 241, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.