Rh5DG343200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010096
Physical Location & Seq
Forward (+)
46830544 .. 46837059
6516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG343200.1

Sequence Viewer

Length: 282 bp
ATGGACGAAGCTGAATTTCGACGCCTTCTCCTTCTTTTCCCTGTCGTCCGATCTCGTGACTACCATGCTGAATCAGAGCAATCTAGAGAGTCAACTTCTAAGTCAGCAGAATCTGAAGCGCTAAAAGAATGGCAGGATGCATGGGATGAGGGAGAGAAAATAGACGTGGAGAAGGAAACACGTGATGTACATGATGCATTTTGGGAGAAACTAAAGTTGGTTGCTGAGAGAAAGGTATGTCATTGGCCCATGATCTATTGGGGTTTATTGGTTTTGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

11.21

Weight (kDa)

4.94

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12240 AT5G12240
fragaria_vesca FvH4_3g26230 FvH4_3g26230
malus_domestica MD11G1174500.v1.1
prunus_persica Prupe.6G146500_v2.0.a1
pyrus_communis pycom11g14920
rosa_chinensis RchiOBHm_Chr5g0048901
rosa_laevigata RLG00000034561
rosa_multiflora Rmu_sc0003628.1_g000025
rosa_roxburghii Rroxscaffold_1G00032990
rosa_rugosa Rorug05G0241300 Rorug05G0241400
rosa_samantha Rh5AG321200 Rh5AG323400 Rh5BG331600 Rh5CG357000 Rh5DG343200
rosa_wichuraiana Rw5G030100 Rw5G030300 Rw5G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 135
AcvI CACGTG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 1 cut(s) 189
AfeI AGCGCT 1 cut(s) 120
AflIII ACRYGT 1 cut(s) 179
AjiI CACGTC 1 cut(s) 166
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
AlwNI CAGNNNCTG 1 cut(s) 113
Aor51HI AGCGCT 1 cut(s) 120
AoxI GGCC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 14
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 246
BauI CACGAG 1 cut(s) 54
BbrPI CACGTG 1 cut(s) 182
BfaI CTAG 1 cut(s) 84
BfoI RGCGCY 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 246
BmsI GCATC 2 cut(s) 127, 184
BsaAI YACGTR 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 22
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
BseGI GGATG 2 cut(s) 142, 151
BseMII CTCAG 1 cut(s) 216
BshFI GGCC 1 cut(s) 247
BsnI GGCC 1 cut(s) 247
Bsp1407I TGTACA 1 cut(s) 187
Bsp143I GATC 2 cut(s) 50, 252
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 217
BsrGI TGTACA 1 cut(s) 187
BssMI GATC 2 cut(s) 50, 252
BssNI GRCGYC 1 cut(s) 22
BssSI CACGAG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 22
BstAUI TGTACA 1 cut(s) 187
BstBAI YACGTR 1 cut(s) 182
BstDEI CTNAG 2 cut(s) 99, 225
BstF5I GGATG 2 cut(s) 142, 151
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 2 cut(s) 53, 255
BstMBI GATC 2 cut(s) 50, 252
BsuRI GGCC 1 cut(s) 247
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 2 cut(s) 142, 151
CaiI CAGNNNCTG 1 cut(s) 113
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 246
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 188
CviAII CATG 4 cut(s) 65, 141, 191, 250
CviJI RGCY 2 cut(s) 11, 247
CviKI_1 RGCY 2 cut(s) 11, 247
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 2 cut(s) 99, 225
DpnI GATC 2 cut(s) 52, 254
DpnII GATC 2 cut(s) 50, 252
Eco47III AGCGCT 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 135
Eco72I CACGTG 1 cut(s) 182
EcoT22I ATGCAT 2 cut(s) 142, 199
FaeI CATG 4 cut(s) 68, 144, 194, 253
FaiI YATR 5 cut(s) 66, 142, 192, 238, 251
FatI CATG 4 cut(s) 64, 140, 190, 249
FokI GGATG 2 cut(s) 149, 158
FspBI CTAG 1 cut(s) 84
GlaI GCGC 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 1 cut(s) 247
HgaI GACGC 1 cut(s) 30
HhaI GCGC 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 4 cut(s) 68, 144, 194, 253
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HinfI GANTC 3 cut(s) 71, 89, 110
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 3 cut(s) 50, 76, 115
Hpy188III TCNNGA 2 cut(s) 56, 84
Hpy8I GTNNAC 1 cut(s) 93
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 3 cut(s) 35, 41, 166
HpyCH4IV ACGT 2 cut(s) 165, 181
HpyCH4V TGCA 2 cut(s) 140, 197
HpyF3I CTNAG 2 cut(s) 99, 225
HpySE526I ACGT 2 cut(s) 165, 181
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 4 cut(s) 68, 144, 194, 253
HspAI GCGC 1 cut(s) 119
Kzo9I GATC 2 cut(s) 50, 252
LpnPI CCDG 2 cut(s) 54, 119
LweI GCATC 2 cut(s) 127, 184
MaeI CTAG 1 cut(s) 84
MaeII ACGT 2 cut(s) 165, 181
MaeIII GTNAC 1 cut(s) 56
MalI GATC 2 cut(s) 52, 254
MboI GATC 2 cut(s) 50, 252
MluCI AATT 1 cut(s) 14
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 1 cut(s) 142
Mph1103I ATGCAT 2 cut(s) 142, 199
NdeII GATC 2 cut(s) 50, 252
NlaIII CATG 4 cut(s) 68, 144, 194, 253
NmuCI GTSAC 1 cut(s) 56
NsiI ATGCAT 2 cut(s) 142, 199
PfeI GAWTC 2 cut(s) 71, 110
PleI GAGTC 1 cut(s) 97
PmaCI CACGTG 1 cut(s) 182
PmlI CACGTG 1 cut(s) 182
PpsI GAGTC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 182
PspCI CACGTG 1 cut(s) 182
PspPI GGNCC 1 cut(s) 246
PstNI CAGNNNCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
Sau3AI GATC 2 cut(s) 50, 252
Sau96I GGNCC 1 cut(s) 246
SchI GAGTC 1 cut(s) 98
SetI ASST 4 cut(s) 13, 168, 184, 237
SfaNI GCATC 2 cut(s) 127, 184
Sse9I AATT 1 cut(s) 14
SspMI CTAG 1 cut(s) 84
TaiI ACGT 2 cut(s) 168, 184
TaqI TCGA 1 cut(s) 19
TasI AATT 1 cut(s) 14
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 2 cut(s) 71, 110
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
XapI RAATTY 1 cut(s) 14
XbaI TCTAGA 1 cut(s) 83
XspI CTAG 1 cut(s) 84
Zsp2I ATGCAT 2 cut(s) 142, 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.