MD11G1174500.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
20436077 .. 20449016
12940 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1174500.v1.1.491

Sequence Viewer

Length: 348 bp
ATGGACGACGCTGAATTTGGACGCCTTCTCGATTTCTTCCCAATCGTCCGATCTCGCGATTACCGTGCTGAATCAGAACAATGTAGAGAATCAACTTCTAAGTCAGCACAGCATGAAGAGCATAAAGAATGGCAAGATGCATGGGATGAGGGAGATAAAATTGAAGTGGAGAAGCAAGGACTTGAGGAACATGGTGAATTCTGGGAGAAGCTAAAGTTGGTCGCTGAGAGAAAGGTGGGTGCAGCAGAAGCAGAGAGATTTTGCAAGGCATTTCAACGAATCCACAAGAAACTCGTCTATGAAGAACTGAGTTTGGATGCTGCCCAAAAATTCCTGAACTCGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.53

Weight (kDa)

5.06

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010096)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 57
AcsI RAATTY 3 cut(s) 14, 197, 329
AcyI GRCGYC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 2 cut(s) 164, 275
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
ApeKI GCWGC 2 cut(s) 242, 320
ApoI RAATTY 3 cut(s) 14, 197, 329
ArsI GACNNNNNNTTYG 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 206
BbvI GCAGC 2 cut(s) 254, 307
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BisI GCNGC 2 cut(s) 243, 321
BlsI GCNGC 2 cut(s) 244, 322
BmsI GCATC 2 cut(s) 127, 307
BpuEI CTTGAG 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 340
BseGI GGATG 2 cut(s) 151, 322
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMII CTCAG 2 cut(s) 216, 299
BseXI GCAGC 2 cut(s) 254, 307
BsgI GTGCAG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 340
Bsp143I GATC 1 cut(s) 50
Bsp68I TCGCGA 1 cut(s) 57
BspCNI CTCAG 2 cut(s) 217, 300
BspFNI CGCG 1 cut(s) 57
BspQI GCTCTTC 1 cut(s) 111
BssMI GATC 1 cut(s) 50
BssNI GRCGYC 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 99, 225, 308
BstF5I GGATG 2 cut(s) 151, 322
BstFNI CGCG 1 cut(s) 57
BstKTI GATC 1 cut(s) 53
BstMBI GATC 1 cut(s) 50
BstMWI GCNNNNNNNGC 2 cut(s) 118, 248
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 254, 307
BtsCI GGATG 2 cut(s) 151, 322
BtuMI TCGCGA 1 cut(s) 57
CseI GACGC 2 cut(s) 17, 30
CviAII CATG 3 cut(s) 113, 141, 191
CviJI RGCY 1 cut(s) 211
CviKI_1 RGCY 1 cut(s) 211
DdeI CTNAG 3 cut(s) 99, 225, 308
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 197
EcoT22I ATGCAT 1 cut(s) 142
FaeI CATG 3 cut(s) 116, 144, 194
FaiI YATR 5 cut(s) 114, 123, 142, 192, 300
FatI CATG 3 cut(s) 112, 140, 190
Fnu4HI GCNGC 2 cut(s) 243, 321
FokI GGATG 2 cut(s) 158, 329
Fsp4HI GCNGC 2 cut(s) 243, 321
GluI GCNGC 2 cut(s) 243, 321
HgaI GACGC 2 cut(s) 17, 30
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 3 cut(s) 116, 144, 194
HinfI GANTC 3 cut(s) 71, 89, 279
HphI GGTGA 1 cut(s) 206
Hpy188I TCNGA 2 cut(s) 50, 76
Hpy188III TCNNGA 3 cut(s) 29, 56, 334
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 3 cut(s) 140, 242, 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 248
HpyF3I CTNAG 3 cut(s) 99, 225, 308
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 3 cut(s) 116, 144, 194
Kzo9I GATC 1 cut(s) 50
LguI GCTCTTC 1 cut(s) 111
LpnPI CCDG 1 cut(s) 187
Lsp1109I GCAGC 2 cut(s) 254, 307
LweI GCATC 2 cut(s) 127, 307
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MboII GAAGA 3 cut(s) 28, 128, 314
MluCI AATT 4 cut(s) 14, 159, 197, 329
MnlI CCTC 2 cut(s) 142, 178
Mph1103I ATGCAT 1 cut(s) 142
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 118, 248
NdeII GATC 1 cut(s) 50
NlaIII CATG 3 cut(s) 116, 144, 194
NmeAIII GCCGAG 1 cut(s) 320
NruI TCGCGA 1 cut(s) 57
NsiI ATGCAT 1 cut(s) 142
PciSI GCTCTTC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PfeI GAWTC 3 cut(s) 71, 89, 279
PkrI GCNGC 2 cut(s) 244, 322
RruI TCGCGA 1 cut(s) 57
SapI GCTCTTC 1 cut(s) 111
SatI GCNGC 2 cut(s) 243, 321
Sau3AI GATC 1 cut(s) 50
SetI ASST 2 cut(s) 213, 237
SfaNI GCATC 2 cut(s) 127, 307
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 4 cut(s) 14, 159, 197, 329
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 30
TasI AATT 4 cut(s) 14, 159, 197, 329
TfiI GAWTC 3 cut(s) 71, 89, 279
TseI GCWGC 2 cut(s) 242, 320
TspDTI ATGAA 2 cut(s) 129, 315
XapI RAATTY 3 cut(s) 14, 197, 329
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.