Rroxscaffold_1G00032990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010096
Physical Location & Seq
Reverse (-)
47414445 .. 47420747
6303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032990.1

Sequence Viewer

Length: 348 bp
ATGGACGAAGCTGAATTTCGACGCCTTCTCCTTCTTTTCCCTGTCGTCCGATCTCGTGACTACCATGCTGAATCAGCGCAATCTAGAGAGTCAACTTCTAAGTCAGCAGAATCTGAAGCGCTAAGAGAATGGCAGGATGCATGGGATGAGGGAGAGAAAATAGACGTGGAGAAGGAAACACCTGATGTACATGATGCATTTTGGGAGAAGCTAAAGTTGGTTGCTGAGAGAAAGGTGGGTGCTACAGAAGCAGAAAGATTTTGCAAGGCATTCCAACGAGTTCATAAGAAACTGGTCTATGAAGAACTGAGTCTGGATGCTGCTAAGACCTTTCTGAACTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.39

Weight (kDa)

5.16

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12240 AT5G12240
fragaria_vesca FvH4_3g26230 FvH4_3g26230
malus_domestica MD11G1174500.v1.1
prunus_persica Prupe.6G146500_v2.0.a1
pyrus_communis pycom11g14920
rosa_chinensis RchiOBHm_Chr5g0048901
rosa_laevigata RLG00000034561
rosa_multiflora Rmu_sc0003628.1_g000025
rosa_roxburghii Rroxscaffold_1G00032990
rosa_rugosa Rorug05G0241300 Rorug05G0241400
rosa_samantha Rh5AG321200 Rh5AG323400 Rh5BG331600 Rh5CG357000 Rh5DG343200
rosa_wichuraiana Rw5G030100 Rw5G030300 Rw5G030540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 135
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 1 cut(s) 189
AfeI AGCGCT 1 cut(s) 120
AjiI CACGTC 1 cut(s) 166
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 2 cut(s) 11, 211
AluI AGCT 2 cut(s) 11, 211
AlwNI CAGNNNCTG 1 cut(s) 113
Aor51HI AGCGCT 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 1 cut(s) 14
AspLEI GCGC 2 cut(s) 79, 121
BauI CACGAG 1 cut(s) 54
BbvI GCAGC 1 cut(s) 307
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 243
BfoI RGCGCY 1 cut(s) 122
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BmgBI CACGTC 1 cut(s) 166
BmsI GCATC 3 cut(s) 127, 184, 307
BsaHI GRCGYC 1 cut(s) 22
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bse1I ACTGG 1 cut(s) 297
BseGI GGATG 3 cut(s) 142, 151, 322
BseMII CTCAG 2 cut(s) 216, 299
BseNI ACTGG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 307
BsmI GAATGC 1 cut(s) 269
Bsp1407I TGTACA 1 cut(s) 187
Bsp143I GATC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 217, 300
BspHI TCATGA 1 cut(s) 344
BsrGI TGTACA 1 cut(s) 187
BsrI ACTGG 1 cut(s) 297
BssMI GATC 1 cut(s) 50
BssNI GRCGYC 1 cut(s) 22
BssSI CACGAG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 22
BstAUI TGTACA 1 cut(s) 187
BstDEI CTNAG 5 cut(s) 99, 122, 225, 308, 324
BstF5I GGATG 3 cut(s) 142, 151, 322
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 2 cut(s) 79, 121
BstKTI GATC 1 cut(s) 53
BstMBI GATC 1 cut(s) 50
BstMWI GCNNNNNNNGC 2 cut(s) 74, 248
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 307
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 3 cut(s) 142, 151, 322
CaiI CAGNNNCTG 1 cut(s) 113
CciI TCATGA 1 cut(s) 344
CfoI GCGC 2 cut(s) 79, 121
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 188
CviAII CATG 4 cut(s) 65, 141, 191, 345
CviJI RGCY 2 cut(s) 11, 211
CviKI_1 RGCY 2 cut(s) 11, 211
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 5 cut(s) 99, 122, 225, 308, 324
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
Eco47III AGCGCT 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 135
EcoT22I ATGCAT 2 cut(s) 142, 199
FaeI CATG 4 cut(s) 68, 144, 194, 348
FaiI YATR 6 cut(s) 66, 142, 192, 285, 300, 346
FatI CATG 4 cut(s) 64, 140, 190, 344
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 3 cut(s) 149, 158, 329
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 84
GlaI GCGC 2 cut(s) 78, 120
GluI GCNGC 1 cut(s) 321
HaeII RGCGCY 1 cut(s) 122
HgaI GACGC 1 cut(s) 30
HhaI GCGC 2 cut(s) 79, 121
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 4 cut(s) 68, 144, 194, 348
Hin6I GCGC 2 cut(s) 77, 119
HinP1I GCGC 2 cut(s) 77, 119
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HinfI GANTC 4 cut(s) 71, 89, 110, 310
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 3 cut(s) 50, 115, 336
Hpy188III TCNNGA 4 cut(s) 56, 84, 314, 345
Hpy8I GTNNAC 1 cut(s) 93
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 3 cut(s) 35, 41, 166
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 3 cut(s) 140, 197, 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 248
HpyF3I CTNAG 5 cut(s) 99, 122, 225, 308, 324
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 4 cut(s) 68, 144, 194, 348
HspAI GCGC 2 cut(s) 77, 119
Kzo9I GATC 1 cut(s) 50
LpnPI CCDG 5 cut(s) 54, 119, 195, 278, 299
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 3 cut(s) 127, 184, 307
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MboII GAAGA 1 cut(s) 314
MluCI AATT 1 cut(s) 14
MlyI GAGTC 2 cut(s) 98, 319
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 1 cut(s) 142
Mph1103I ATGCAT 2 cut(s) 142, 199
Mva1269I GAATGC 1 cut(s) 269
MwoI GCNNNNNNNGC 2 cut(s) 74, 248
NdeII GATC 1 cut(s) 50
NlaIII CATG 4 cut(s) 68, 144, 194, 348
NmuCI GTSAC 1 cut(s) 56
NsiI ATGCAT 2 cut(s) 142, 199
PagI TCATGA 1 cut(s) 344
PctI GAATGC 1 cut(s) 269
PfeI GAWTC 2 cut(s) 71, 110
PkrI GCNGC 1 cut(s) 322
PleI GAGTC 2 cut(s) 97, 318
PpsI GAGTC 2 cut(s) 97, 318
PstNI CAGNNNCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 50
SchI GAGTC 2 cut(s) 98, 319
SetI ASST 6 cut(s) 13, 168, 184, 213, 237, 332
SfaNI GCATC 3 cut(s) 127, 184, 307
SfcI CTRYAG 1 cut(s) 243
Sse9I AATT 1 cut(s) 14
SspMI CTAG 1 cut(s) 84
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 19
TasI AATT 1 cut(s) 14
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 2 cut(s) 71, 110
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 272, 315
XapI RAATTY 1 cut(s) 14
XbaI TCTAGA 1 cut(s) 83
XspI CTAG 1 cut(s) 84
Zsp2I ATGCAT 2 cut(s) 142, 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.