Rh5BG331600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
46065735 .. 46072250
6516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG331600.1

Sequence Viewer

Length: 267 bp
ATGGACGAAGCTGAATTTCGACGCCTTCTCCTTCTTTTCCCTGTCGTCCGATCTCGTGACTACCATGCTGAATCAGAGCAATCTAGAGAGTCAACTTCTAAGTCAGCAGAATCTGAAGCGGATGCATGGGATGAGGGAGAGAAAATAGACGTGGAGAAGGAAACACGTGATGTACATGATGCATTTTGGGAGAAACTAAAGTTGGTTGCTGAGAGAAAGGTATGTCATTGGCCCATGATCTATTGGGGTTTATTGGTTTTGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.52

Weight (kDa)

4.91

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010096)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 119
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 135
AcvI CACGTG 1 cut(s) 167
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 1 cut(s) 174
AflIII ACRYGT 1 cut(s) 164
AjiI CACGTC 1 cut(s) 151
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 231
BauI CACGAG 1 cut(s) 54
BbrPI CACGTG 1 cut(s) 167
BfaI CTAG 1 cut(s) 84
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 231
BmsI GCATC 2 cut(s) 112, 169
BsaAI YACGTR 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 22
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
BseGI GGATG 2 cut(s) 127, 136
BseMII CTCAG 1 cut(s) 201
BshFI GGCC 1 cut(s) 232
BsnI GGCC 1 cut(s) 232
Bsp1407I TGTACA 1 cut(s) 172
Bsp143I GATC 2 cut(s) 50, 237
BspACI CCGC 1 cut(s) 119
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 202
BsrGI TGTACA 1 cut(s) 172
BssMI GATC 2 cut(s) 50, 237
BssNI GRCGYC 1 cut(s) 22
BssSI CACGAG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 22
BstAUI TGTACA 1 cut(s) 172
BstBAI YACGTR 1 cut(s) 167
BstDEI CTNAG 2 cut(s) 99, 210
BstF5I GGATG 2 cut(s) 127, 136
BstKTI GATC 2 cut(s) 53, 240
BstMBI GATC 2 cut(s) 50, 237
BsuRI GGCC 1 cut(s) 232
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 2 cut(s) 127, 136
CaiI CAGNNNCTG 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 231
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 173
CviAII CATG 4 cut(s) 65, 126, 176, 235
CviJI RGCY 2 cut(s) 11, 232
CviKI_1 RGCY 2 cut(s) 11, 232
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 2 cut(s) 99, 210
DpnI GATC 2 cut(s) 52, 239
DpnII GATC 2 cut(s) 50, 237
Eco57I CTGAAG 1 cut(s) 135
Eco72I CACGTG 1 cut(s) 167
EcoT22I ATGCAT 2 cut(s) 127, 184
FaeI CATG 4 cut(s) 68, 129, 179, 238
FaiI YATR 5 cut(s) 66, 127, 177, 223, 236
FatI CATG 4 cut(s) 64, 125, 175, 234
FokI GGATG 2 cut(s) 134, 143
FspBI CTAG 1 cut(s) 84
HaeIII GGCC 1 cut(s) 232
HgaI GACGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 4 cut(s) 68, 129, 179, 238
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HinfI GANTC 3 cut(s) 71, 89, 110
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 3 cut(s) 50, 76, 115
Hpy188III TCNNGA 2 cut(s) 56, 84
Hpy8I GTNNAC 1 cut(s) 93
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 3 cut(s) 35, 41, 151
HpyCH4IV ACGT 2 cut(s) 150, 166
HpyCH4V TGCA 2 cut(s) 125, 182
HpyF3I CTNAG 2 cut(s) 99, 210
HpySE526I ACGT 2 cut(s) 150, 166
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 4 cut(s) 68, 129, 179, 238
Kzo9I GATC 2 cut(s) 50, 237
LpnPI CCDG 1 cut(s) 54
LweI GCATC 2 cut(s) 112, 169
MaeI CTAG 1 cut(s) 84
MaeII ACGT 2 cut(s) 150, 166
MaeIII GTNAC 1 cut(s) 56
MalI GATC 2 cut(s) 52, 239
MboI GATC 2 cut(s) 50, 237
MluCI AATT 1 cut(s) 14
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 1 cut(s) 127
Mph1103I ATGCAT 2 cut(s) 127, 184
NdeII GATC 2 cut(s) 50, 237
NlaIII CATG 4 cut(s) 68, 129, 179, 238
NmuCI GTSAC 1 cut(s) 56
NsiI ATGCAT 2 cut(s) 127, 184
PfeI GAWTC 2 cut(s) 71, 110
PleI GAGTC 1 cut(s) 97
PmaCI CACGTG 1 cut(s) 167
PmlI CACGTG 1 cut(s) 167
PpsI GAGTC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 167
PspCI CACGTG 1 cut(s) 167
PspPI GGNCC 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
Sau3AI GATC 2 cut(s) 50, 237
Sau96I GGNCC 1 cut(s) 231
SchI GAGTC 1 cut(s) 98
SetI ASST 4 cut(s) 13, 153, 169, 222
SfaNI GCATC 2 cut(s) 112, 169
Sse9I AATT 1 cut(s) 14
SsiI CCGC 1 cut(s) 119
SspMI CTAG 1 cut(s) 84
TaiI ACGT 2 cut(s) 153, 169
TaqI TCGA 1 cut(s) 19
TasI AATT 1 cut(s) 14
TatI WGTACW 1 cut(s) 172
TfiI GAWTC 2 cut(s) 71, 110
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
XapI RAATTY 1 cut(s) 14
XbaI TCTAGA 1 cut(s) 83
XspI CTAG 1 cut(s) 84
Zsp2I ATGCAT 2 cut(s) 127, 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.