Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013645

Physical Location & Seq

Genomic Coordinates Reverse (-)

20244127 .. 20248263

Gene Structure 4137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGAAGATTGCAAACCTCCATCATCCTTGTCATCAAAGAAGCCTAAAATGTTAACTCCAGAAGGTCCATACAGACTTCTCTATTGTTCGAGTAAGGGTGACAAAACAGGGGTGATGCAGGAGTTAGAGAAAGGCGTAGAGCCAGATCTTGGGGACTATGATAAGAGAACAGCTCTTCATTTGGCATCTTGTGAAGGCTGCACCGAGATTGTTCTTCTTCTTCTTCACAAAGGTGCTAATGTTAATTGCACTGATCGTTGGGGCCGCACTCCATTGTCGGATGCTCGTAGCTTTGGTCATGATGGGATTTGCAAGATATTGGAATCTAGGGGCGGAATAGATCCGGTAGGGCTTGACTCTCAACTTCCGTGCTATGAAATTTCTTACAAAGAGGTGAACATGGACGAGGCAACACTTATTGGAGAGGGAGCATATGGTGAAATTTATTTAGTAAAGTGGCGCGGTACAGAAGTTGCTGCTAAAACAATCCGTCCCTCCATCGCTTCTAAACCAACTGTCAAGGATCTATTTCTGAAGGAACTTGCTTTGTGGCAACGGTTGCGTCACCCAAACATAGTTCAATTCCTTGGGGTCATGAAGCACCCTGATCGCTTGATCTTCCTTACGGAGTTCCTTTGTAATGGAAGTTTGCATGATATATTGAAAAGGAAGGGAAGACTTGATCTACAAACCGTTATTGGTTATGCTTTGGATATTGCTAGAGGTATGAATTATCTCCATCAGCATAAACCGCGCCCTATAATCCATAGAGATTTGACACCAAGAAATGTGTTACAAGATGAAGCTGGACGCCTCAAGGTCACAGATTTTGGCTTAAGCAAAATAGCACAGCACAATGACGTATCTGGTTATAAAATGACTGGAAGGACAGGTTCATATCGGTATATGGCACCAGAGGTTTATCGTCGAGAATCATATGGAAAGAGTATTGATATCTTCTCATTTGCTCTAATAGTACATGAGATGTTTCTAGGAGGACCATCAAATCTGGCAGAGGATCCTGAACAAATTGCAGACAAGAGAGCATATGAGCATTCAAGACCACCTCTCTACTCTTATTTGTACCCCGAACCAATTAGAGCGCTTCTAAAAGAATGCTGGCACCCGAATCCAGATTGCCGACCAACATTCCAAGAGATCATTGAGCAGTTGGAGCTTATTCAAGAGGATACTCAAGTCAAGAAAAGATTGGGGTCTACTTGTAATAGTAAGTGTGTCATCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0004713 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0023052 GO:0030154 GO:0030435 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Pkinase Pkinase_Tyr

Protein Analysis

416

Amino Acids

46.98

Weight (kDa)

7.91

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	26 - 114	5.1e-11	Ankyrin repeats (3 copies)
Ank_5	PF13857	43 - 92	9.5e-06	Ankyrin repeats (many copies)
Ank	PF00023	55 - 86	2.8e-08	Ankyrin repeat
Pkinase	PF00069	138 - 389	1.5e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	139 - 391	2.1e-53	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013645)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27170 FvH4_7g14180
malus_domestica	MD07G1138800.v1.1
prunus_persica	Prupe.2G168200_v2.0.a1
pyrus_communis	pycom01g08770 pycom07g13590
rosa_chinensis	RchiOBHm_Chr1g0355091
rosa_laevigata	RLG00000028178
rosa_multiflora	Rmu_sc0003115.1_g000031 Rmu_sc0016725.1_g000005
rosa_roxburghii	Rroxscaffold_4G00300680
rosa_rugosa	Rorug01G0245000
rosa_samantha	Rh1AG257300 Rh1BG226600 Rh1CG240900 Rh1DG254200
rosa_wichuraiana	Rw0G011220 Rw1G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	873
AccB1I	GGYRCC	2 cut(s)	910, 1122
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	1217
AccII	CGCG	2 cut(s)	462, 754
AciI	CCGC	4 cut(s)	265, 333, 462, 752
AclWI	GGATC	4 cut(s)	335, 531, 1013, 1026
AcsI	RAATTY	2 cut(s)	378, 441
AcuI	CTGAAG	1 cut(s)	554
AcyI	GRCGYC	1 cut(s)	811
AfaI	GTAC	3 cut(s)	466, 978, 1085
AfeI	AGCGCT	1 cut(s)	1104
AfiI	CCNNNNNNNGG	1 cut(s)	149
AflII	CTTAAG	1 cut(s)	835
AgsI	TTSAA	4 cut(s)	581, 664, 1059, 1184
AleI	CACNNNNGTG	1 cut(s)	231
AluBI	AGCT	4 cut(s)	173, 291, 806, 1177
AluI	AGCT	4 cut(s)	173, 291, 806, 1177
AlwI	GGATC	4 cut(s)	335, 531, 1013, 1026
Aor51HI	AGCGCT	1 cut(s)	1104
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	2 cut(s)	198, 476
ApoI	RAATTY	2 cut(s)	378, 441
AspLEI	GCGC	3 cut(s)	462, 756, 1105
AspS9I	GGNCC	3 cut(s)	65, 262, 998
AsuHPI	GGTGA	5 cut(s)	110, 124, 406, 449, 557
AvaII	GGWCC	2 cut(s)	65, 998
BaeI	ACNNNNGTAYC	4 cut(s)	456, 489, 1182, 1215
BamHI	GGATCC	1 cut(s)	1018
BanI	GGYRCC	2 cut(s)	910, 1122
BbsI	GAAGAC	1 cut(s)	682
BbvI	GCAGC	2 cut(s)	185, 463
BccI	CCATC	5 cut(s)	28, 296, 506, 747, 1009
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BciVI	GTATCC	1 cut(s)	1183
BfaI	CTAG	3 cut(s)	327, 720, 992
BfoI	RGCGCY	1 cut(s)	1106
BfrI	CTTAAG	1 cut(s)	835
BfuI	GTATCC	1 cut(s)	1183
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	3 cut(s)	199, 265, 477
BlsI	GCNGC	3 cut(s)	200, 266, 478
Bme18I	GGWCC	2 cut(s)	65, 998
BmgT120I	GGNCC	3 cut(s)	65, 262, 998
BmiI	GGNNCC	4 cut(s)	263, 912, 1020, 1124
BmsI	GCATC	3 cut(s)	105, 194, 271
BpiI	GAAGAC	1 cut(s)	682
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
BpmI	CTGGAG	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	800, 1179
BsaHI	GRCGYC	1 cut(s)	811
BsaJI	CCNNGG	1 cut(s)	586
BsaWI	WCCGGW	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	886
BseDI	CCNNGG	1 cut(s)	586
BseGI	GGATG	2 cut(s)	23, 286
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseNI	ACTGG	1 cut(s)	886
BseXI	GCAGC	2 cut(s)	185, 463
BsgI	GTGCAG	1 cut(s)	184
Bsh1236I	CGCG	2 cut(s)	462, 754
BshFI	GGCC	1 cut(s)	264
BshNI	GGYRCC	2 cut(s)	910, 1122
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	2 cut(s)	167, 477
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmFI	GGGAC	2 cut(s)	167, 477
BsmI	GAATGC	2 cut(s)	1054, 1121
BsnI	GGCC	1 cut(s)	264
Bsp143I	GATC	9 cut(s)	145, 253, 340, 523, 607, 615, 682, 1018, 1158
BspACI	CCGC	4 cut(s)	265, 333, 462, 752
BspANI	GGCC	1 cut(s)	264
BspFNI	CGCG	2 cut(s)	462, 754
BspHI	TCATGA	2 cut(s)	298, 594
BspLI	GGNNCC	4 cut(s)	263, 912, 1020, 1124
BspPI	GGATC	4 cut(s)	335, 531, 1013, 1026
BspQI	GCTCTTC	1 cut(s)	180
BspT107I	GGYRCC	2 cut(s)	910, 1122
BspTI	CTTAAG	1 cut(s)	835
BsrI	ACTGG	1 cut(s)	886
BssECI	CCNNGG	1 cut(s)	586
BssMI	GATC	9 cut(s)	145, 253, 340, 523, 607, 615, 682, 1018, 1158
BssNI	GRCGYC	1 cut(s)	811
BssT1I	CCWWGG	1 cut(s)	586
Bst4CI	ACNGT	3 cut(s)	517, 558, 694
Bst6I	CTCTTC	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	811
BstAFI	CTTAAG	1 cut(s)	835
BstAPI	GCANNNNNTGC	1 cut(s)	559
BstC8I	GCNNGC	1 cut(s)	1121
BstF5I	GGATG	2 cut(s)	23, 286
BstFNI	CGCG	2 cut(s)	462, 754
BstH2I	RGCGCY	1 cut(s)	1106
BstHHI	GCGC	3 cut(s)	462, 756, 1105
BstKTI	GATC	9 cut(s)	148, 256, 343, 526, 610, 618, 685, 1021, 1161
BstMBI	GATC	9 cut(s)	145, 253, 340, 523, 607, 615, 682, 1018, 1158
BstMWI	GCNNNNNNNGC	3 cut(s)	559, 751, 1174
BstUI	CGCG	2 cut(s)	462, 754
BstV1I	GCAGC	2 cut(s)	185, 463
BstV2I	GAAGAC	1 cut(s)	682
BstX2I	RGATCY	4 cut(s)	145, 340, 523, 1018
BstYI	RGATCY	4 cut(s)	145, 340, 523, 1018
BsuI	GTATCC	1 cut(s)	1183
BsuRI	GGCC	1 cut(s)	264
BtgZI	GCGATG	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	23, 286
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	1121
CciI	TCATGA	2 cut(s)	298, 594
CfoI	GCGC	3 cut(s)	462, 756, 1105
Cfr13I	GGNCC	3 cut(s)	65, 262, 998
CseI	GACGC	2 cut(s)	551, 819
Csp6I	GTAC	3 cut(s)	465, 977, 1084
CviAII	CATG	5 cut(s)	299, 400, 595, 653, 980
CviQI	GTAC	3 cut(s)	465, 977, 1084
DpnI	GATC	9 cut(s)	147, 255, 342, 525, 609, 617, 684, 1020, 1160
DpnII	GATC	9 cut(s)	145, 253, 340, 523, 607, 615, 682, 1018, 1158
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
EciI	GGCGGA	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	586
Eco32I	GATATC	1 cut(s)	955
Eco47I	GGWCC	2 cut(s)	65, 998
Eco47III	AGCGCT	1 cut(s)	1104
Eco57I	CTGAAG	1 cut(s)	554
EcoRV	GATATC	1 cut(s)	955
EcoT14I	CCWWGG	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	586
FaeI	CATG	5 cut(s)	302, 403, 598, 656, 983
FaqI	GGGAC	2 cut(s)	167, 477
FatI	CATG	5 cut(s)	298, 399, 594, 652, 979
FauNDI	CATATG	3 cut(s)	433, 937, 1048
FblI	GTMKAC	1 cut(s)	1217
Fnu4HI	GCNGC	3 cut(s)	199, 265, 477
FokI	GGATG	2 cut(s)	10, 293
Fsp4HI	GCNGC	3 cut(s)	199, 265, 477
FspBI	CTAG	3 cut(s)	327, 720, 992
GlaI	GCGC	3 cut(s)	461, 755, 1104
GluI	GCNGC	3 cut(s)	199, 265, 477
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	1106
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	1 cut(s)	344
HgaI	GACGC	2 cut(s)	551, 819
HhaI	GCGC	3 cut(s)	462, 756, 1105
Hin1I	GRCGYC	1 cut(s)	811
Hin1II	CATG	5 cut(s)	302, 403, 598, 656, 983
Hin6I	GCGC	3 cut(s)	460, 754, 1103
HinP1I	GCGC	3 cut(s)	460, 754, 1103
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	4 cut(s)	323, 356, 932, 1129
HpaI	GTTAAC	1 cut(s)	54
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	5 cut(s)	110, 124, 406, 449, 557
Hpy166II	GTNNAC	3 cut(s)	54, 397, 1218
Hpy188I	TCNGA	2 cut(s)	280, 534
Hpy8I	GTNNAC	3 cut(s)	54, 397, 1218
Hpy99I	CGWCG	1 cut(s)	930
HpyAV	CCTTC	5 cut(s)	56, 188, 529, 664, 879
HpyCH4III	ACNGT	3 cut(s)	517, 558, 694
HpyCH4IV	ACGT	1 cut(s)	861
HpyCH4V	TGCA	7 cut(s)	12, 118, 201, 249, 312, 652, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	559, 751, 1174
HpySE526I	ACGT	1 cut(s)	861
Hsp92I	GRCGYC	1 cut(s)	811
Hsp92II	CATG	5 cut(s)	302, 403, 598, 656, 983
HspAI	GCGC	3 cut(s)	460, 754, 1103
KspAI	GTTAAC	1 cut(s)	54
Kzo9I	GATC	9 cut(s)	145, 253, 340, 523, 607, 615, 682, 1018, 1158
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	428, 1174
Lsp1109I	GCAGC	2 cut(s)	185, 463
LweI	GCATC	3 cut(s)	105, 194, 271
MaeI	CTAG	3 cut(s)	327, 720, 992
MaeII	ACGT	1 cut(s)	861
MaeIII	GTNAC	4 cut(s)	98, 563, 792, 820
MalI	GATC	9 cut(s)	147, 255, 342, 525, 609, 617, 684, 1020, 1160
MboI	GATC	9 cut(s)	145, 253, 340, 523, 607, 615, 682, 1018, 1158
MboII	GAAGA	9 cut(s)	17, 167, 206, 209, 212, 215, 610, 687, 949
MflI	RGATCY	4 cut(s)	145, 340, 523, 1018
MluCI	AATT	7 cut(s)	244, 378, 441, 581, 730, 1029, 1095
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	258, 1152
MseI	TTAA	3 cut(s)	53, 243, 836
MslI	CAYNNNNRTG	1 cut(s)	231
MspCI	CTTAAG	1 cut(s)	835
MspI	CCGG	1 cut(s)	344
Mva1269I	GAATGC	2 cut(s)	1054, 1121
MvnI	CGCG	2 cut(s)	462, 754
MwoI	GCNNNNNNNGC	3 cut(s)	559, 751, 1174
NdeI	CATATG	3 cut(s)	433, 937, 1048
NdeII	GATC	9 cut(s)	145, 253, 340, 523, 607, 615, 682, 1018, 1158
NlaIII	CATG	5 cut(s)	302, 403, 598, 656, 983
NlaIV	GGNNCC	4 cut(s)	263, 912, 1020, 1124
NmuCI	GTSAC	3 cut(s)	98, 563, 820
OliI	CACNNNNGTG	1 cut(s)	231
PagI	TCATGA	2 cut(s)	298, 594
PciSI	GCTCTTC	1 cut(s)	180
PctI	GAATGC	2 cut(s)	1054, 1121
PfeI	GAWTC	3 cut(s)	323, 932, 1129
PflMI	CCANNNNNTGG	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	200, 266, 478
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PsiI	TTATAA	1 cut(s)	873
PspN4I	GGNNCC	4 cut(s)	263, 912, 1020, 1124
PspPI	GGNCC	3 cut(s)	65, 262, 998
PsuI	RGATCY	4 cut(s)	145, 340, 523, 1018
RsaI	GTAC	3 cut(s)	466, 978, 1085
RsaNI	GTAC	3 cut(s)	465, 977, 1084
RseI	CAYNNNNRTG	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	53, 243, 836
SatI	GCNGC	3 cut(s)	199, 265, 477
Sau3AI	GATC	9 cut(s)	145, 253, 340, 523, 607, 615, 682, 1018, 1158
Sau96I	GGNCC	3 cut(s)	65, 262, 998
SchI	GAGTC	1 cut(s)	350
SfaNI	GCATC	3 cut(s)	105, 194, 271
SinI	GGWCC	2 cut(s)	65, 998
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	3 cut(s)	815, 835, 1194
SmoI	CTYRAG	3 cut(s)	815, 835, 1194
Sse9I	AATT	7 cut(s)	244, 378, 441, 581, 730, 1029, 1095
SsiI	CCGC	4 cut(s)	265, 333, 462, 752
SspMI	CTAG	3 cut(s)	327, 720, 992
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	3 cut(s)	517, 558, 694
TaiI	ACGT	1 cut(s)	864
TaqI	TCGA	2 cut(s)	89, 928
TasI	AATT	7 cut(s)	244, 378, 441, 581, 730, 1029, 1095
TatI	WGTACW	1 cut(s)	976
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	3 cut(s)	323, 932, 1129
Tru1I	TTAA	3 cut(s)	53, 243, 836
Tru9I	TTAA	3 cut(s)	53, 243, 836
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	3 cut(s)	98, 563, 820
TseI	GCWGC	2 cut(s)	198, 476
Tsp45I	GTSAC	3 cut(s)	98, 563, 820
TspDTI	ATGAA	6 cut(s)	167, 390, 611, 743, 816, 885
TspGWI	ACGGA	3 cut(s)	357, 479, 641
TspRI	CASTG	1 cut(s)	256
Van91I	CCANNNNNTGG	1 cut(s)	149
Vha464I	CTTAAG	1 cut(s)	835
VpaK11BI	GGWCC	2 cut(s)	65, 998
XapI	RAATTY	2 cut(s)	378, 441
XmiI	GTMKAC	1 cut(s)	1217
XspI	CTAG	3 cut(s)	327, 720, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.