Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013645

Physical Location & Seq

Genomic Coordinates Reverse (-)

12549375 .. 12552415

Gene Structure 3041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGCAGAAGCCTAAAAAGATTACCCCAGAAGTTCCAAGCAGGCTGCTATATTGCTCGAGTAAGGGTGACAAAGCAGGGGTGTTGCAAGAGTTGGAGAAAGGCATGGAGCTGAATCTGGAGAACTATGATAAGAGAACAGCTCTTCATTTGGCATCGTGTGAAGGCTGCACCGAAATTGTTATTCTACTTCTTCATAAAGGTGCTAATGTTAACTACACAGATCGCTGGGGCCGCACTCCATTGTCGGATGCTCGTAGCTTTGGTCATGAGGGGATTTGCAAGATATTAGAGGCTAGAGGTGGAATAGATCCGGTAGGGCTTGACTCTCAGCTTCCATGCTATGATATTTCTTGCAAAGAAGTGAACATGGACGAGGCAACACTAATCGGAGAGGGAGCATATCATGAAATTTATTTAGTAAAGTGGCGTGGTACAGAAGTTGCTGCTAAGACAATTCGTCCCTCCATCGCTTCTGAACCCATTATGAGGGATCTCTTTCTGAAGGAACTTGCTGTGTGGCAACGGTTGCGTCATCCTAACATAGTGCAATTTCTTGGGGTCATGAAACATCCTGATCGGCTGATCTTCCTTACAGAGTTTCTTTGCAATGGAAGTTTGCATGATATATTGCAAAGGAAGGGAAGACTTGATTTGCAAACCGTCATTCGTTATGCTTTAGATATTGCCAGAGGGATAAATTATCTCCATCAGCATAAACCGCGCCCTATAATCCATAGAGATTTGACACCAAGAAATGTGTTACAAGATGAAGCTGGACGCCTCAAGGTCACAGATTTTGGCTTGAGCAAAATTGCCCAACACAATGATGTATCTGGTTATAAAATGACTGGAGGGACAGGCTCATATCGGTATATGGCACCTGAGGTTTATCGTCGAGAACCATATGGGAAGAGCATCGATGTCTTCTCATTTTCTATAATAGTACATGAGATGTTTATGGGAGGACCAGTAAATCTTGCAGAGGATCCTGAAAAAATAGCAGACAAGAGAGCATATGAAATTTCAAGACCACCCCTAAACCCTGATTTGATACCAGAACCAATTAGACAGCTTATAAGAGAATGCTGGCACCCGAATCCAGATGTGCGACCTACATTCGAAGAGATCATTATGCAGTTGGAGCTTATTCAAGAGTATATTCAAGCCAAGAGGAGATTGAGGTCGACGTGTAGTAGCAGGTGTGTCATCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0004713 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0023052 GO:0030154 GO:0030435 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Pkinase Pkinase_Tyr

Protein Analysis

405

Amino Acids

46.11

Weight (kDa)

8.24

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	16 - 102	3.2e-11	Ankyrin repeats (3 copies)
Ank_5	PF13857	31 - 81	1.6e-06	Ankyrin repeats (many copies)
Ank	PF00023	44 - 75	2.9e-08	Ankyrin repeat
Pkinase	PF00069	127 - 377	9.9e-52	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	128 - 380	1.4e-52	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013645)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27170 FvH4_7g14180
malus_domestica	MD07G1138800.v1.1
prunus_persica	Prupe.2G168200_v2.0.a1
pyrus_communis	pycom01g08770 pycom07g13590
rosa_chinensis	RchiOBHm_Chr1g0355091
rosa_laevigata	RLG00000028178
rosa_multiflora	Rmu_sc0003115.1_g000031 Rmu_sc0016725.1_g000005
rosa_roxburghii	Rroxscaffold_4G00300680
rosa_rugosa	Rorug01G0245000
rosa_samantha	Rh1AG257300 Rh1BG226600 Rh1CG240900 Rh1DG254200
rosa_wichuraiana	Rw0G011220 Rw1G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	840, 1076
AarI	CACCTGC	1 cut(s)	1188
Acc36I	ACCTGC	1 cut(s)	1188
AccB1I	GGYRCC	2 cut(s)	877, 1089
AccI	GTMKAC	1 cut(s)	1184
AccII	CGCG	1 cut(s)	721
AciI	CCGC	2 cut(s)	232, 719
AclWI	GGATC	4 cut(s)	302, 498, 980, 993
AcsI	RAATTY	2 cut(s)	408, 1020
AcuI	CTGAAG	1 cut(s)	521
AcyI	GRCGYC	1 cut(s)	778
AfaI	GTAC	2 cut(s)	433, 945
AfiI	CCNNNNNNNGG	1 cut(s)	486
AflIII	ACRYGT	1 cut(s)	1187
AgsI	TTSAA	3 cut(s)	1026, 1151, 1163
AhdI	GACNNNNNGTC	1 cut(s)	456
AjiI	CACGTC	1 cut(s)	1188
AluBI	AGCT	7 cut(s)	109, 140, 258, 331, 773, 1072, 1144
AluI	AGCT	7 cut(s)	109, 140, 258, 331, 773, 1072, 1144
AlwI	GGATC	4 cut(s)	302, 498, 980, 993
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	3 cut(s)	43, 165, 443
ApoI	RAATTY	2 cut(s)	408, 1020
AspLEI	GCGC	1 cut(s)	723
AspS9I	GGNCC	2 cut(s)	229, 965
AsuHPI	GGTGA	1 cut(s)	77
AsuII	TTCGAA	1 cut(s)	1119
AvaI	CYCGRG	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	965
AxyI	CCTNAGG	1 cut(s)	882
BaeI	ACNNNNGTAYC	2 cut(s)	423, 456
BamHI	GGATCC	1 cut(s)	985
BanI	GGYRCC	2 cut(s)	877, 1089
BbsI	GAAGAC	2 cut(s)	649, 916
BbvI	GCAGC	3 cut(s)	30, 152, 430
BccI	CCATC	2 cut(s)	473, 714
BfaI	CTAG	1 cut(s)	294
BfuAI	ACCTGC	1 cut(s)	1188
BisI	GCNGC	4 cut(s)	44, 166, 232, 444
BlsI	GCNGC	4 cut(s)	45, 167, 233, 445
Bme18I	GGWCC	1 cut(s)	965
BmeRI	GACNNNNNGTC	1 cut(s)	456
BmeT110I	CYCGRG	1 cut(s)	55
BmgBI	CACGTC	1 cut(s)	1188
BmgT120I	GGNCC	2 cut(s)	229, 965
BmiI	GGNNCC	4 cut(s)	230, 879, 987, 1091
BmsI	GCATC	3 cut(s)	161, 238, 924
BpiI	GAAGAC	2 cut(s)	649, 916
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
BpmI	CTGGAG	2 cut(s)	137, 870
Bpu14I	TTCGAA	1 cut(s)	1119
BpuEI	CTTGAG	2 cut(s)	767, 823
Bsa29I	ATCGAT	1 cut(s)	918
BsaHI	GRCGYC	1 cut(s)	778
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	954, 984
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
Bse1I	ACTGG	2 cut(s)	853, 968
Bse21I	CCTNAGG	1 cut(s)	882
Bse3DI	GCAATG	1 cut(s)	613
BseCI	ATCGAT	1 cut(s)	918
BseGI	GGATG	3 cut(s)	253, 532, 568
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseMI	GCAATG	1 cut(s)	613
BseMII	CTCAG	2 cut(s)	341, 873
BseNI	ACTGG	2 cut(s)	853, 968
BseRI	GAGGAG	1 cut(s)	1186
BseXI	GCAGC	3 cut(s)	30, 152, 430
BseYI	CCCAGC	1 cut(s)	225
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	721
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	2 cut(s)	877, 1089
BshVI	ATCGAT	1 cut(s)	918
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	2 cut(s)	444, 868
BslI	CCNNNNNNNGG	1 cut(s)	486
BsmFI	GGGAC	2 cut(s)	444, 868
BsmI	GAATGC	1 cut(s)	1088
BsnI	GGCC	1 cut(s)	231
BsoBI	CYCGRG	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	1119
Bsp143I	GATC	7 cut(s)	220, 307, 490, 574, 582, 985, 1125
BspACI	CCGC	2 cut(s)	232, 719
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	2 cut(s)	340, 874
BspDI	ATCGAT	1 cut(s)	918
BspFNI	CGCG	1 cut(s)	721
BspHI	TCATGA	3 cut(s)	265, 403, 561
BspLI	GGNNCC	4 cut(s)	230, 879, 987, 1091
BspMI	ACCTGC	1 cut(s)	1188
BspPI	GGATC	4 cut(s)	302, 498, 980, 993
BspQI	GCTCTTC	2 cut(s)	147, 905
BspT104I	TTCGAA	1 cut(s)	1119
BspT107I	GGYRCC	2 cut(s)	877, 1089
BsrDI	GCAATG	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	853, 968
BssMI	GATC	7 cut(s)	220, 307, 490, 574, 582, 985, 1125
BssNI	GRCGYC	1 cut(s)	778
Bst4CI	ACNGT	2 cut(s)	525, 661
Bst6I	CTCTTC	3 cut(s)	147, 905, 1116
BstACI	GRCGYC	1 cut(s)	778
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstBI	TTCGAA	1 cut(s)	1119
BstC8I	GCNNGC	2 cut(s)	41, 1088
BstDEI	CTNAG	3 cut(s)	327, 447, 882
BstF5I	GGATG	3 cut(s)	253, 532, 568
BstFNI	CGCG	1 cut(s)	721
BstHHI	GCGC	1 cut(s)	723
BstKTI	GATC	7 cut(s)	223, 310, 493, 577, 585, 988, 1128
BstMBI	GATC	7 cut(s)	220, 307, 490, 574, 582, 985, 1125
BstMWI	GCNNNNNNNGC	4 cut(s)	231, 526, 718, 1141
BstUI	CGCG	1 cut(s)	721
BstV1I	GCAGC	3 cut(s)	30, 152, 430
BstV2I	GAAGAC	2 cut(s)	649, 916
BstX2I	RGATCY	3 cut(s)	307, 490, 985
BstYI	RGATCY	3 cut(s)	307, 490, 985
Bsu15I	ATCGAT	1 cut(s)	918
Bsu36I	CCTNAGG	1 cut(s)	882
BsuRI	GGCC	1 cut(s)	231
BsuTUI	ATCGAT	1 cut(s)	918
BtgZI	GCGATG	1 cut(s)	451
BtrI	CACGTC	1 cut(s)	1188
BtsCI	GGATG	3 cut(s)	253, 532, 568
BveI	ACCTGC	1 cut(s)	1188
Cac8I	GCNNGC	2 cut(s)	41, 1088
CciI	TCATGA	3 cut(s)	265, 403, 561
CfoI	GCGC	1 cut(s)	723
Cfr13I	GGNCC	2 cut(s)	229, 965
ClaI	ATCGAT	1 cut(s)	918
CseI	GACGC	2 cut(s)	518, 786
Csp6I	GTAC	2 cut(s)	432, 944
CviAII	CATG	8 cut(s)	103, 266, 336, 367, 404, 562, 620, 947
CviQI	GTAC	2 cut(s)	432, 944
DdeI	CTNAG	3 cut(s)	327, 447, 882
DpnI	GATC	7 cut(s)	222, 309, 492, 576, 584, 987, 1127
DpnII	GATC	7 cut(s)	220, 307, 490, 574, 582, 985, 1125
DriI	GACNNNNNGTC	1 cut(s)	456
Eam1104I	CTCTTC	3 cut(s)	147, 905, 1116
Eam1105I	GACNNNNNGTC	1 cut(s)	456
EarI	CTCTTC	3 cut(s)	147, 905, 1116
Eco47I	GGWCC	1 cut(s)	965
Eco57I	CTGAAG	1 cut(s)	521
Eco81I	CCTNAGG	1 cut(s)	882
Eco88I	CYCGRG	1 cut(s)	55
FaeI	CATG	8 cut(s)	106, 269, 339, 370, 407, 565, 623, 950
FaqI	GGGAC	2 cut(s)	444, 868
FatI	CATG	8 cut(s)	102, 265, 335, 366, 403, 561, 619, 946
FauNDI	CATATG	2 cut(s)	904, 1015
FblI	GTMKAC	1 cut(s)	1184
Fnu4HI	GCNGC	4 cut(s)	44, 166, 232, 444
FokI	GGATG	3 cut(s)	260, 519, 555
Fsp4HI	GCNGC	4 cut(s)	44, 166, 232, 444
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	1 cut(s)	722
GluI	GCNGC	4 cut(s)	44, 166, 232, 444
GsaI	CCCAGC	1 cut(s)	229
GsuI	CTGGAG	2 cut(s)	137, 870
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	1 cut(s)	311
HgaI	GACGC	2 cut(s)	518, 786
HhaI	GCGC	1 cut(s)	723
Hin1I	GRCGYC	1 cut(s)	778
Hin1II	CATG	8 cut(s)	106, 269, 339, 370, 407, 565, 623, 950
Hin6I	GCGC	1 cut(s)	721
HinP1I	GCGC	1 cut(s)	721
HincII	GTYRAC	2 cut(s)	211, 1185
HindII	GTYRAC	2 cut(s)	211, 1185
HinfI	GANTC	3 cut(s)	112, 323, 1096
HpaI	GTTAAC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	3 cut(s)	211, 364, 1185
Hpy188I	TCNGA	4 cut(s)	247, 389, 475, 501
Hpy8I	GTNNAC	3 cut(s)	211, 364, 1185
Hpy99I	CGWCG	2 cut(s)	897, 1189
HpyAV	CCTTC	3 cut(s)	155, 496, 631
HpyCH4III	ACNGT	2 cut(s)	525, 661
HpyCH4IV	ACGT	1 cut(s)	1187
HpyF10VI	GCNNNNNNNGC	4 cut(s)	231, 526, 718, 1141
HpyF3I	CTNAG	3 cut(s)	327, 447, 882
HpySE526I	ACGT	1 cut(s)	1187
Hsp92I	GRCGYC	1 cut(s)	778
Hsp92II	CATG	8 cut(s)	106, 269, 339, 370, 407, 565, 623, 950
HspAI	GCGC	1 cut(s)	721
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	7 cut(s)	220, 307, 490, 574, 582, 985, 1125
LguI	GCTCTTC	2 cut(s)	147, 905
LmnI	GCTCC	3 cut(s)	106, 395, 1141
Lsp1109I	GCAGC	3 cut(s)	30, 152, 430
LweI	GCATC	3 cut(s)	161, 238, 924
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	1187
MaeIII	GTNAC	3 cut(s)	65, 759, 787
MalI	GATC	7 cut(s)	222, 309, 492, 576, 584, 987, 1127
MboI	GATC	7 cut(s)	220, 307, 490, 574, 582, 985, 1125
MboII	GAAGA	7 cut(s)	134, 182, 577, 654, 916, 922, 1133
MflI	RGATCY	3 cut(s)	307, 490, 985
MluCI	AATT	8 cut(s)	174, 408, 453, 548, 697, 810, 1020, 1062
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	3 cut(s)	72, 225, 1119
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	2 cut(s)	198, 825
MspI	CCGG	1 cut(s)	311
Mva1269I	GAATGC	1 cut(s)	1088
MvnI	CGCG	1 cut(s)	721
MwoI	GCNNNNNNNGC	4 cut(s)	231, 526, 718, 1141
NdeI	CATATG	2 cut(s)	904, 1015
NdeII	GATC	7 cut(s)	220, 307, 490, 574, 582, 985, 1125
NlaIII	CATG	8 cut(s)	106, 269, 339, 370, 407, 565, 623, 950
NlaIV	GGNNCC	4 cut(s)	230, 879, 987, 1091
NmuCI	GTSAC	2 cut(s)	65, 787
NspV	TTCGAA	1 cut(s)	1119
PaeR7I	CTCGAG	1 cut(s)	55
PagI	TCATGA	3 cut(s)	265, 403, 561
PaqCI	CACCTGC	1 cut(s)	1188
PciSI	GCTCTTC	2 cut(s)	147, 905
PctI	GAATGC	1 cut(s)	1088
PfeI	GAWTC	2 cut(s)	112, 1096
PkrI	GCNGC	4 cut(s)	45, 167, 233, 445
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
PsiI	TTATAA	2 cut(s)	840, 1076
PspFI	CCCAGC	1 cut(s)	225
PspN4I	GGNNCC	4 cut(s)	230, 879, 987, 1091
PspPI	GGNCC	2 cut(s)	229, 965
PspXI	VCTCGAGB	1 cut(s)	55
PsuI	RGATCY	3 cut(s)	307, 490, 985
RsaI	GTAC	2 cut(s)	433, 945
RsaNI	GTAC	2 cut(s)	432, 944
RseI	CAYNNNNRTG	2 cut(s)	198, 825
SalI	GTCGAC	1 cut(s)	1183
SapI	GCTCTTC	2 cut(s)	147, 905
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	4 cut(s)	44, 166, 232, 444
Sau3AI	GATC	7 cut(s)	220, 307, 490, 574, 582, 985, 1125
Sau96I	GGNCC	2 cut(s)	229, 965
SchI	GAGTC	1 cut(s)	317
SfaNI	GCATC	3 cut(s)	161, 238, 924
Sfr274I	CTCGAG	1 cut(s)	55
SfuI	TTCGAA	1 cut(s)	1119
SinI	GGWCC	1 cut(s)	965
SlaI	CTCGAG	1 cut(s)	55
SmiMI	CAYNNNNRTG	2 cut(s)	198, 825
SmlI	CTYRAG	3 cut(s)	55, 782, 802
SmoI	CTYRAG	3 cut(s)	55, 782, 802
Sse9I	AATT	8 cut(s)	174, 408, 453, 548, 697, 810, 1020, 1062
SsiI	CCGC	2 cut(s)	232, 719
SspMI	CTAG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	525, 661
TaiI	ACGT	1 cut(s)	1190
TaqI	TCGA	5 cut(s)	56, 895, 918, 1119, 1184
TasI	AATT	8 cut(s)	174, 408, 453, 548, 697, 810, 1020, 1062
TatI	WGTACW	1 cut(s)	943
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	112, 1096
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseFI	GTSAC	2 cut(s)	65, 787
TseI	GCWGC	3 cut(s)	43, 165, 443
Tsp45I	GTSAC	2 cut(s)	65, 787
TspDTI	ATGAA	6 cut(s)	134, 182, 420, 578, 783, 1032
VpaK11BI	GGWCC	1 cut(s)	965
XapI	RAATTY	2 cut(s)	408, 1020
XhoI	CTCGAG	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	1184
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.