Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0013645

Physical Location & Seq

Genomic Coordinates Forward (+)

15475813 .. 15478954

Gene Structure 3142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGAAGATTGCTTGTCATCATCTAAGAAGTCTCAAAAGGTGGCTGGATTTGAAGGTCCATACCGGCTGCTATATTGTTCGAGCAAGGGAGACAAAGCAGGAGTGATGCGCGAGCTAGAGAAAGGGGTGGAGCCGGATTTAGCTGACTATGATAAGAGAACAGCTCTTCACTTGGCATCCTGTGAAGGCTGCACTGAGATTGTTGTTCTGCTTCTTCAGAAAGGTGCTGATGTGAACTCCACAGATCGCTGGGGTCGCACTCCACTATCAGATGCTCGTAGCTTCAGTCACGAGGCGATTTGCAAGATATTGGAGGCTAAGGGTGGAATAGATCCAGTAGGGCTTGATTCCCAGCTTCCATGCTATGAACTTGATCACAGAGAGGTGAACATGGATGAAGCAGCACTTATTGGAGAGGGTTCATATGGTGAGATTTATTTAGTGAGGTGGCGCGGTACAGAAGTTGCTGCTAAAACAATCCGCTCGTCCATTGCTTCCAATCCGATAGTGAAGAATATCTTTATGAAGGAACTCGCTTTGTGGCAAAAGTTGCGCCACCCTAATATCGTGCAATTCCTTGGTGTTTTGAAGCACCCTAGCCGCTTGATCTTCCTTACCGAGTATCTTTGCAATGGAAGTTTGCATGATATATTGAAGAGAAAAGGAAGACTTGATCTACAAACTGTAGTTTCTTTTGCTCTAGATATCGCCAGAGGCATGAATTATCTTCATCAGCATAAACCGCGCCCTATAATTCATCGAGATTTGACACCAAGAAATGTTTTACAAGATGAAGCCGGGCGCCTCAAGGTCACGGATTTTGGCTTAAGTAAAATTGCACAGGAAAATGATTTATCCGGTTATAAAATGACTGGACGAACAGGTTCATATCGTTATATGGCACCTGAGGTTTATCGTCGAGAATCATATGGAACGAGTATTGATATCTTCTCATTCGCTCTCATAGTCCATGAGATGTTTCTTGGAGGACCACCTAATCTGGCAGAGGATCCAGAAAAAATTGCAGACAAGCGCGCATACGAGGATTCTCGACCACCTCTCTACTCTTATTTGTACCCCGAGCCAATCAGGACGCTTCTGAAAGAATGCTGGCACCAGAATCCAGATTGTCGGCCGACGTTTGAAGAGATTATTGTGAAGCTGGAGGAGATTCAGGATCAGTTAAAGAACAAGAGGAAAATGGGTACGTGTAGCGGTGTTTGTGTCATTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0004713 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0023052 GO:0030154 GO:0030435 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Pkinase Pkinase_Tyr

Protein Analysis

412

Amino Acids

46.49

Weight (kDa)

7.14

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013645)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27170 FvH4_7g14180
malus_domestica	MD07G1138800.v1.1
prunus_persica	Prupe.2G168200_v2.0.a1
pyrus_communis	pycom01g08770 pycom07g13590
rosa_chinensis	RchiOBHm_Chr1g0355091
rosa_laevigata	RLG00000028178
rosa_multiflora	Rmu_sc0003115.1_g000031 Rmu_sc0016725.1_g000005
rosa_roxburghii	Rroxscaffold_4G00300680
rosa_rugosa	Rorug01G0245000
rosa_samantha	Rh1AG257300 Rh1BG226600 Rh1CG240900 Rh1DG254200
rosa_wichuraiana	Rw0G011220 Rw1G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	864
AccB1I	GGYRCC	3 cut(s)	801, 901, 1113
AccBSI	CCGCTC	1 cut(s)	483
AccII	CGCG	4 cut(s)	111, 453, 745, 1035
AciI	CCGC	5 cut(s)	453, 481, 601, 743, 1215
AclWI	GGATC	4 cut(s)	326, 1004, 1017, 1185
AcoI	YGGCCR	1 cut(s)	1133
AcuI	CTGAAG	2 cut(s)	200, 268
AcyI	GRCGYC	1 cut(s)	802
AfaI	GTAC	3 cut(s)	457, 1076, 1207
AflII	CTTAAG	1 cut(s)	826
AflIII	ACRYGT	1 cut(s)	1208
AgsI	TTSAA	4 cut(s)	53, 589, 655, 1145
AluBI	AGCT	6 cut(s)	115, 143, 164, 282, 355, 1162
AluI	AGCT	6 cut(s)	115, 143, 164, 282, 355, 1162
Alw26I	GTCTC	2 cut(s)	36, 84
AlwI	GGATC	4 cut(s)	326, 1004, 1017, 1185
Ama87I	CYCGRG	1 cut(s)	1079
AoxI	GGCC	1 cut(s)	1133
ApeKI	GCWGC	4 cut(s)	67, 189, 401, 467
Asp700I	GAANNNNTTC	1 cut(s)	883
AspLEI	GCGC	7 cut(s)	111, 453, 555, 747, 804, 1035, 1037
AspS9I	GGNCC	2 cut(s)	56, 989
AsuC2I	CCSGG	1 cut(s)	799
AsuHPI	GGTGA	2 cut(s)	397, 440
AvaI	CYCGRG	1 cut(s)	1079
AvaII	GGWCC	2 cut(s)	56, 989
AxyI	CCTNAGG	1 cut(s)	906
BaeI	ACNNNNGTAYC	2 cut(s)	447, 480
BamHI	GGATCC	1 cut(s)	1009
BanI	GGYRCC	3 cut(s)	801, 901, 1113
BauI	CACGAG	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	673
BbvI	GCAGC	4 cut(s)	54, 176, 413, 454
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	799
BcoDI	GTCTC	2 cut(s)	36, 84
BfaI	CTAG	3 cut(s)	116, 597, 701
BfmI	CTRYAG	1 cut(s)	684
BfoI	RGCGCY	1 cut(s)	805
BfrI	CTTAAG	1 cut(s)	826
BisI	GCNGC	5 cut(s)	68, 190, 402, 468, 601
BlsI	GCNGC	5 cut(s)	69, 191, 403, 469, 602
Bme1390I	CCNGG	1 cut(s)	799
Bme18I	GGWCC	2 cut(s)	56, 989
BmeT110I	CYCGRG	1 cut(s)	1079
BmgT120I	GGNCC	2 cut(s)	56, 989
BmiI	GGNNCC	5 cut(s)	132, 803, 903, 1011, 1115
BmrFI	CCNGG	1 cut(s)	799
BmsI	GCATC	3 cut(s)	96, 185, 262
BpiI	GAAGAC	1 cut(s)	673
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
BpmI	CTGGAG	1 cut(s)	1184
Bpu10I	CCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	791
BpuMI	CCSGG	1 cut(s)	799
BsaAI	YACGTR	1 cut(s)	1209
BsaHI	GRCGYC	1 cut(s)	802
BsaJI	CCNNGG	1 cut(s)	577
BsaWI	WCCGGW	1 cut(s)	857
Bse118I	RCCGGY	1 cut(s)	63
Bse1I	ACTGG	2 cut(s)	335, 877
Bse21I	CCTNAGG	1 cut(s)	906
Bse3DI	GCAATG	2 cut(s)	489, 637
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	2 cut(s)	176, 400
BseMI	GCAATG	2 cut(s)	489, 637
BseMII	CTCAG	2 cut(s)	186, 897
BseNI	ACTGG	2 cut(s)	335, 877
BsePI	GCGCGC	1 cut(s)	1033
BseRI	GAGGAG	1 cut(s)	1181
BseX3I	CGGCCG	1 cut(s)	1133
BseXI	GCAGC	4 cut(s)	54, 176, 413, 454
BseYI	CCCAGC	2 cut(s)	249, 351
BsgI	GTGCAG	1 cut(s)	175
Bsh1236I	CGCG	4 cut(s)	111, 453, 745, 1035
Bsh1285I	CGRYCG	1 cut(s)	1136
BshFI	GGCC	1 cut(s)	1135
BshNI	GGYRCC	3 cut(s)	801, 901, 1113
BsiEI	CGRYCG	1 cut(s)	1136
BsiHKCI	CYCGRG	1 cut(s)	1079
BsiSI	CCGG	4 cut(s)	64, 134, 798, 858
BsmAI	GTCTC	2 cut(s)	36, 84
BsmI	GAATGC	1 cut(s)	1112
BsnI	GGCC	1 cut(s)	1135
BsoBI	CYCGRG	1 cut(s)	1079
Bsp143I	GATC	7 cut(s)	244, 331, 373, 606, 673, 1009, 1177
BspACI	CCGC	5 cut(s)	453, 481, 601, 743, 1215
BspANI	GGCC	1 cut(s)	1135
BspCNI	CTCAG	2 cut(s)	187, 898
BspFNI	CGCG	4 cut(s)	111, 453, 745, 1035
BspLI	GGNNCC	5 cut(s)	132, 803, 903, 1011, 1115
BspPI	GGATC	4 cut(s)	326, 1004, 1017, 1185
BspQI	GCTCTTC	1 cut(s)	171
BspT107I	GGYRCC	3 cut(s)	801, 901, 1113
BspTI	CTTAAG	1 cut(s)	826
BsrBI	CCGCTC	1 cut(s)	483
BsrDI	GCAATG	2 cut(s)	489, 637
BsrFI	RCCGGY	1 cut(s)	63
BsrI	ACTGG	2 cut(s)	335, 877
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	577
BssHII	GCGCGC	1 cut(s)	1033
BssMI	GATC	7 cut(s)	244, 331, 373, 606, 673, 1009, 1177
BssNI	GRCGYC	1 cut(s)	802
BssSI	CACGAG	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	577
Bst2BI	CACGAG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	685
Bst6I	CTCTTC	3 cut(s)	171, 650, 1140
BstACI	GRCGYC	1 cut(s)	802
BstAFI	CTTAAG	1 cut(s)	826
BstAPI	GCANNNNNTGC	1 cut(s)	550
BstBAI	YACGTR	1 cut(s)	1209
BstC8I	GCNNGC	3 cut(s)	113, 1035, 1112
BstDEI	CTNAG	4 cut(s)	24, 195, 318, 906
BstF5I	GGATG	2 cut(s)	176, 400
BstFNI	CGCG	4 cut(s)	111, 453, 745, 1035
BstH2I	RGCGCY	1 cut(s)	805
BstHHI	GCGC	7 cut(s)	111, 453, 555, 747, 804, 1035, 1037
BstKTI	GATC	7 cut(s)	247, 334, 376, 609, 676, 1012, 1180
BstMAI	GTCTC	2 cut(s)	36, 84
BstMBI	GATC	7 cut(s)	244, 331, 373, 606, 673, 1009, 1177
BstMCI	CGRYCG	1 cut(s)	1136
BstMWI	GCNNNNNNNGC	3 cut(s)	255, 550, 742
BstSCI	CCNGG	1 cut(s)	797
BstSFI	CTRYAG	1 cut(s)	684
BstUI	CGCG	4 cut(s)	111, 453, 745, 1035
BstV1I	GCAGC	4 cut(s)	54, 176, 413, 454
BstV2I	GAAGAC	1 cut(s)	673
BstX2I	RGATCY	2 cut(s)	331, 1009
BstYI	RGATCY	2 cut(s)	331, 1009
BstZI	CGGCCG	1 cut(s)	1133
Bsu36I	CCTNAGG	1 cut(s)	906
BsuRI	GGCC	1 cut(s)	1135
BtsCI	GGATG	2 cut(s)	176, 400
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	113, 1035, 1112
CfoI	GCGC	7 cut(s)	111, 453, 555, 747, 804, 1035, 1037
Cfr10I	RCCGGY	1 cut(s)	63
Cfr13I	GGNCC	2 cut(s)	56, 989
CseI	GACGC	1 cut(s)	1102
Csp6I	GTAC	3 cut(s)	456, 1075, 1206
CviAII	CATG	5 cut(s)	360, 391, 644, 718, 971
CviQI	GTAC	3 cut(s)	456, 1075, 1206
DdeI	CTNAG	4 cut(s)	24, 195, 318, 906
DinI	GGCGCC	1 cut(s)	803
DpnI	GATC	7 cut(s)	246, 333, 375, 608, 675, 1011, 1179
DpnII	GATC	7 cut(s)	244, 331, 373, 606, 673, 1009, 1177
EaeI	YGGCCR	1 cut(s)	1133
EagI	CGGCCG	1 cut(s)	1133
Eam1104I	CTCTTC	3 cut(s)	171, 650, 1140
EarI	CTCTTC	3 cut(s)	171, 650, 1140
EclXI	CGGCCG	1 cut(s)	1133
Eco130I	CCWWGG	1 cut(s)	577
Eco32I	GATATC	2 cut(s)	706, 946
Eco47I	GGWCC	2 cut(s)	56, 989
Eco52I	CGGCCG	1 cut(s)	1133
Eco57I	CTGAAG	2 cut(s)	200, 268
Eco81I	CCTNAGG	1 cut(s)	906
Eco88I	CYCGRG	1 cut(s)	1079
EcoRV	GATATC	2 cut(s)	706, 946
EcoT14I	CCWWGG	1 cut(s)	577
EgeI	GGCGCC	1 cut(s)	803
EheI	GGCGCC	1 cut(s)	803
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	5 cut(s)	363, 394, 647, 721, 974
FalI	AAGNNNNNCTT	6 cut(s)	390, 422, 503, 535, 654, 686
FatI	CATG	5 cut(s)	359, 390, 643, 717, 970
FauNDI	CATATG	2 cut(s)	424, 928
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	5 cut(s)	68, 190, 402, 468, 601
FokI	GGATG	2 cut(s)	163, 407
Fsp4HI	GCNGC	5 cut(s)	68, 190, 402, 468, 601
FspBI	CTAG	3 cut(s)	116, 597, 701
GlaI	GCGC	7 cut(s)	110, 452, 554, 746, 803, 1034, 1036
GluI	GCNGC	5 cut(s)	68, 190, 402, 468, 601
GsaI	CCCAGC	2 cut(s)	253, 355
GsuI	CTGGAG	1 cut(s)	1184
HaeII	RGCGCY	1 cut(s)	805
HaeIII	GGCC	1 cut(s)	1135
HapII	CCGG	4 cut(s)	64, 134, 798, 858
HgaI	GACGC	1 cut(s)	1102
HhaI	GCGC	7 cut(s)	111, 453, 555, 747, 804, 1035, 1037
Hin1I	GRCGYC	1 cut(s)	802
Hin1II	CATG	5 cut(s)	363, 394, 647, 721, 974
Hin6I	GCGC	7 cut(s)	109, 451, 553, 745, 802, 1033, 1035
HinP1I	GCGC	7 cut(s)	109, 451, 553, 745, 802, 1033, 1035
HinfI	GANTC	5 cut(s)	347, 923, 1046, 1120, 1171
HpaII	CCGG	4 cut(s)	64, 134, 798, 858
HphI	GGTGA	2 cut(s)	397, 440
Hpy166II	GTNNAC	2 cut(s)	235, 388
Hpy188I	TCNGA	4 cut(s)	219, 271, 504, 1101
Hpy188III	TCNNGA	9 cut(s)	290, 701, 761, 920, 1013, 1050, 1090, 1124, 1175
Hpy8I	GTNNAC	2 cut(s)	235, 388
Hpy99I	CGWCG	2 cut(s)	921, 1141
HpyAV	CCTTC	3 cut(s)	47, 179, 520
HpyCH4III	ACNGT	1 cut(s)	685
HpyCH4IV	ACGT	2 cut(s)	1139, 1208
HpyCH4V	TGCA	7 cut(s)	192, 303, 571, 630, 643, 839, 1025
HpyF10VI	GCNNNNNNNGC	3 cut(s)	255, 550, 742
HpyF3I	CTNAG	4 cut(s)	24, 195, 318, 906
HpySE526I	ACGT	2 cut(s)	1139, 1208
Hsp92I	GRCGYC	1 cut(s)	802
Hsp92II	CATG	5 cut(s)	363, 394, 647, 721, 974
HspAI	GCGC	7 cut(s)	109, 451, 553, 745, 802, 1033, 1035
KasI	GGCGCC	1 cut(s)	801
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	7 cut(s)	244, 331, 373, 606, 673, 1009, 1177
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	4 cut(s)	54, 176, 413, 454
LweI	GCATC	3 cut(s)	96, 185, 262
MaeI	CTAG	3 cut(s)	116, 597, 701
MaeII	ACGT	2 cut(s)	1139, 1208
MaeIII	GTNAC	2 cut(s)	287, 811
MalI	GATC	7 cut(s)	246, 333, 375, 608, 675, 1011, 1179
MbiI	CCGCTC	1 cut(s)	483
MboI	GATC	7 cut(s)	244, 331, 373, 606, 673, 1009, 1177
MflI	RGATCY	2 cut(s)	331, 1009
MluCI	AATT	5 cut(s)	572, 721, 753, 834, 1020
Mly113I	GGCGCC	1 cut(s)	802
MroXI	GAANNNNTTC	1 cut(s)	883
MseI	TTAA	2 cut(s)	827, 1184
MspCI	CTTAAG	1 cut(s)	826
MspI	CCGG	4 cut(s)	64, 134, 798, 858
MspR9I	CCNGG	1 cut(s)	799
Mva1269I	GAATGC	1 cut(s)	1112
MvnI	CGCG	4 cut(s)	111, 453, 745, 1035
MwoI	GCNNNNNNNGC	3 cut(s)	255, 550, 742
NarI	GGCGCC	1 cut(s)	802
NciI	CCSGG	1 cut(s)	799
NdeI	CATATG	2 cut(s)	424, 928
NdeII	GATC	7 cut(s)	244, 331, 373, 606, 673, 1009, 1177
NlaIII	CATG	5 cut(s)	363, 394, 647, 721, 974
NlaIV	GGNNCC	5 cut(s)	132, 803, 903, 1011, 1115
NmuCI	GTSAC	2 cut(s)	287, 811
PauI	GCGCGC	1 cut(s)	1033
PciSI	GCTCTTC	1 cut(s)	171
PctI	GAATGC	1 cut(s)	1112
PdmI	GAANNNNTTC	1 cut(s)	883
PfeI	GAWTC	5 cut(s)	347, 923, 1046, 1120, 1171
PkrI	GCNGC	5 cut(s)	69, 191, 403, 469, 602
PluTI	GGCGCC	1 cut(s)	805
Ppu21I	YACGTR	1 cut(s)	1209
PsiI	TTATAA	1 cut(s)	864
PspFI	CCCAGC	2 cut(s)	249, 351
PspN4I	GGNNCC	5 cut(s)	132, 803, 903, 1011, 1115
PspPI	GGNCC	2 cut(s)	56, 989
PsuI	RGATCY	2 cut(s)	331, 1009
PteI	GCGCGC	1 cut(s)	1033
RsaI	GTAC	3 cut(s)	457, 1076, 1207
RsaNI	GTAC	3 cut(s)	456, 1075, 1206
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	827, 1184
SatI	GCNGC	5 cut(s)	68, 190, 402, 468, 601
Sau3AI	GATC	7 cut(s)	244, 331, 373, 606, 673, 1009, 1177
Sau96I	GGNCC	2 cut(s)	56, 989
ScrFI	CCNGG	1 cut(s)	799
SfaNI	GCATC	3 cut(s)	96, 185, 262
SfcI	CTRYAG	1 cut(s)	684
SfoI	GGCGCC	1 cut(s)	803
SinI	GGWCC	2 cut(s)	56, 989
SmlI	CTYRAG	2 cut(s)	806, 826
SmoI	CTYRAG	2 cut(s)	806, 826
Sse9I	AATT	5 cut(s)	572, 721, 753, 834, 1020
SsiI	CCGC	5 cut(s)	453, 481, 601, 743, 1215
SspDI	GGCGCC	1 cut(s)	801
SspMI	CTAG	3 cut(s)	116, 597, 701
StyD4I	CCNGG	1 cut(s)	797
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	1 cut(s)	685
TaiI	ACGT	2 cut(s)	1142, 1211
TaqI	TCGA	4 cut(s)	80, 760, 919, 1051
TasI	AATT	5 cut(s)	572, 721, 753, 834, 1020
TauI	GCSGC	1 cut(s)	603
TfiI	GAWTC	5 cut(s)	347, 923, 1046, 1120, 1171
Tru1I	TTAA	2 cut(s)	827, 1184
Tru9I	TTAA	2 cut(s)	827, 1184
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	2 cut(s)	287, 811
TseI	GCWGC	4 cut(s)	67, 189, 401, 467
Tsp45I	GTSAC	2 cut(s)	287, 811
TspDTI	ATGAA	9 cut(s)	381, 411, 411, 539, 719, 734, 746, 807, 876
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	1 cut(s)	199
Vha464I	CTTAAG	1 cut(s)	826
VpaK11BI	GGWCC	2 cut(s)	56, 989
XbaI	TCTAGA	1 cut(s)	700
XmnI	GAANNNNTTC	1 cut(s)	883
XspI	CTAG	3 cut(s)	116, 597, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.