Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003115.1

Orthogroup ID

OG0013645

Physical Location & Seq

Genomic Coordinates Reverse (-)

134888 .. 136940

Gene Structure 2053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003115.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgcagaagcctaaaaagttcacctcagaaggtccataccggctgttatattgttcaagtaagggtgacaaagcaggggtggagcaggagttagagaaaggtgtggagccgaatcttggggactatgataagagaacagctcttcatttggcatcatgtgaaggctgcactgaaattgttgttctacttcttcagaaaggtgctaatgttaactgcacagaccgctggggccgcactccattgtctgatgctcgtagcttcggtcatgatgggatttgcaagttattggaggctaggggtggaatagatccggtagggcttgactctcagcttccatgctatgaaatttcttacaaagaggtgaacatggacgaggcaacacttattggagagttgcgtcaccctaacatagtgcaattccttggggtcatgaagcaccctgatcgcttgatcttccttacagagtttctttgcaatggaagtttgcatgatatattgaaaaggaagggaagacttgatctgaaaaccgtcgttggttatgctttagatattgccagaaatgtgttacaagatgaagctggacgactcaaggtcacagattttgggttaagcaaaatcgcccaacacaatgatgtatctggttataaaatgactggaaggacaggctcatgtaagatatgccttttgactgaaaatccagtactgctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0004713 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0023052 GO:0030154 GO:0030435 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Pkinase Pkinase_Tyr

Protein Analysis

236

Amino Acids

26.12

Weight (kDa)

6.99

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013645)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27170 FvH4_7g14180
malus_domestica	MD07G1138800.v1.1
prunus_persica	Prupe.2G168200_v2.0.a1
pyrus_communis	pycom01g08770 pycom07g13590
rosa_chinensis	RchiOBHm_Chr1g0355091
rosa_laevigata	RLG00000028178
rosa_multiflora	Rmu_sc0003115.1_g000031 Rmu_sc0016725.1_g000005
rosa_roxburghii	Rroxscaffold_4G00300680
rosa_rugosa	Rorug01G0245000
rosa_samantha	Rh1AG257300 Rh1BG226600 Rh1CG240900 Rh1DG254200
rosa_wichuraiana	Rw0G011220 Rw1G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
AciI	CCGC	2 cut(s)	223, 232
AclWI	GGATC	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	702
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	2 cut(s)	57, 499
AhdI	GACNNNNNGTC	1 cut(s)	590
AluBI	AGCT	4 cut(s)	140, 258, 331, 578
AluI	AGCT	4 cut(s)	140, 258, 331, 578
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	32, 229
AsuHPI	GGTGA	4 cut(s)	13, 77, 373, 392
AvaII	GGWCC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	517
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	263
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BfaI	CTAG	1 cut(s)	294
BisI	GCNGC	2 cut(s)	166, 232
BlsI	GCNGC	2 cut(s)	167, 233
BmcAI	AGTACT	1 cut(s)	702
Bme18I	GGWCC	1 cut(s)	32
BmeRI	GACNNNNNGTC	1 cut(s)	590
BmgT120I	GGNCC	2 cut(s)	32, 229
BmiI	GGNNCC	2 cut(s)	108, 230
BmsI	GCATC	2 cut(s)	161, 238
BpiI	GAAGAC	1 cut(s)	517
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
BpuEI	CTTGAG	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	421
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	39
Bse1I	ACTGG	2 cut(s)	658, 698
Bse3DI	GCAATG	1 cut(s)	481
BseDI	CCNNGG	1 cut(s)	421
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	2 cut(s)	39, 341
BseNI	ACTGG	2 cut(s)	658, 698
BseXI	GCAGC	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	225
BsgI	GTGCAG	2 cut(s)	151, 199
BshFI	GGCC	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	40, 311
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	307, 442, 450, 517
BspACI	CCGC	2 cut(s)	223, 232
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	2 cut(s)	38, 340
BspHI	TCATGA	2 cut(s)	265, 429
BspLI	GGNNCC	2 cut(s)	108, 230
BspPI	GGATC	1 cut(s)	302
BspQI	GCTCTTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	481
BsrFI	RCCGGY	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	658, 698
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	4 cut(s)	307, 442, 450, 517
BssT1I	CCWWGG	1 cut(s)	421
Bst4CI	ACNGT	1 cut(s)	529
Bst6I	CTCTTC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	25, 327
BstKTI	GATC	4 cut(s)	310, 445, 453, 520
BstMBI	GATC	4 cut(s)	307, 442, 450, 517
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 231
BstV1I	GCAGC	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	517
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	168
CciI	TCATGA	2 cut(s)	265, 429
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	32, 229
CseI	GACGC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	701
CviAII	CATG	7 cut(s)	156, 266, 336, 367, 430, 488, 669
CviQI	GTAC	1 cut(s)	701
DdeI	CTNAG	2 cut(s)	25, 327
DpnI	GATC	4 cut(s)	309, 444, 452, 519
DpnII	GATC	4 cut(s)	307, 442, 450, 517
DriI	GACNNNNNGTC	1 cut(s)	590
Eam1104I	CTCTTC	1 cut(s)	147
Eam1105I	GACNNNNNGTC	1 cut(s)	590
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	7 cut(s)	159, 269, 339, 370, 433, 491, 672
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	7 cut(s)	155, 265, 335, 366, 429, 487, 668
Fnu4HI	GCNGC	2 cut(s)	166, 232
Fsp4HI	GCNGC	2 cut(s)	166, 232
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	2 cut(s)	166, 232
GsaI	CCCAGC	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	40, 311
HgaI	GACGC	1 cut(s)	386
Hin1II	CATG	7 cut(s)	159, 269, 339, 370, 433, 491, 672
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	3 cut(s)	112, 323, 585
HpaI	GTTAAC	1 cut(s)	211
HpaII	CCGG	2 cut(s)	40, 311
HphI	GGTGA	4 cut(s)	13, 77, 373, 392
Hpy166II	GTNNAC	3 cut(s)	21, 211, 364
Hpy188I	TCNGA	4 cut(s)	28, 195, 247, 522
Hpy188III	TCNNGA	2 cut(s)	266, 430
Hpy8I	GTNNAC	3 cut(s)	21, 211, 364
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	4 cut(s)	23, 155, 499, 651
HpyCH4III	ACNGT	1 cut(s)	529
HpyCH4V	TGCA	7 cut(s)	4, 168, 216, 279, 415, 474, 487
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 231
HpyF3I	CTNAG	2 cut(s)	25, 327
Hsp92II	CATG	7 cut(s)	159, 269, 339, 370, 433, 491, 672
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	307, 442, 450, 517
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	2 cut(s)	82, 106
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	2 cut(s)	161, 238
MaeI	CTAG	1 cut(s)	294
MaeIII	GTNAC	4 cut(s)	65, 398, 564, 592
MalI	GATC	4 cut(s)	309, 444, 452, 519
MboI	GATC	4 cut(s)	307, 442, 450, 517
MboII	GAAGA	4 cut(s)	134, 182, 445, 522
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	3 cut(s)	174, 345, 416
MlyI	GAGTC	2 cut(s)	317, 579
MnlI	CCTC	4 cut(s)	34, 283, 352, 367
MseI	TTAA	2 cut(s)	210, 608
MslI	CAYNNNNRTG	1 cut(s)	630
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	2 cut(s)	40, 311
MwoI	GCNNNNNNNGC	2 cut(s)	222, 231
NdeII	GATC	4 cut(s)	307, 442, 450, 517
NlaIII	CATG	7 cut(s)	159, 269, 339, 370, 433, 491, 672
NlaIV	GGNNCC	2 cut(s)	108, 230
NmuCI	GTSAC	3 cut(s)	65, 398, 592
PagI	TCATGA	2 cut(s)	265, 429
PciSI	GCTCTTC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	167, 233
PleI	GAGTC	2 cut(s)	317, 579
PpsI	GAGTC	2 cut(s)	317, 579
PsiI	TTATAA	1 cut(s)	645
PspFI	CCCAGC	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	108, 230
PspPI	GGNCC	2 cut(s)	32, 229
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
RseI	CAYNNNNRTG	1 cut(s)	630
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	2 cut(s)	210, 608
SatI	GCNGC	2 cut(s)	166, 232
Sau3AI	GATC	4 cut(s)	307, 442, 450, 517
Sau96I	GGNCC	2 cut(s)	32, 229
ScaI	AGTACT	1 cut(s)	702
SchI	GAGTC	2 cut(s)	317, 579
SfaNI	GCATC	2 cut(s)	161, 238
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	3 cut(s)	174, 345, 416
SsiI	CCGC	2 cut(s)	223, 232
SspMI	CTAG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	1 cut(s)	529
TaqII	GACCGA	1 cut(s)	251
TasI	AATT	3 cut(s)	174, 345, 416
TatI	WGTACW	1 cut(s)	700
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	210, 608
Tru9I	TTAA	2 cut(s)	210, 608
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	3 cut(s)	65, 398, 592
TseI	GCWGC	1 cut(s)	165
Tsp45I	GTSAC	3 cut(s)	65, 398, 592
TspDTI	ATGAA	4 cut(s)	134, 357, 446, 588
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	1 cut(s)	345
XspI	CTAG	1 cut(s)	294
ZrmI	AGTACT	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.