Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016725.1

Orthogroup ID

OG0013645

Physical Location & Seq

Genomic Coordinates Reverse (-)

16161 .. 18207

Gene Structure 2047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016725.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgcagaagcctaaaaagttcacctcagaaggtccataccggctgttatattgttcaagtaagggtgacaaagcaggggtggagcaagagttagagaaaggtgtggagccgaatcttggggactatgataagagaacagctcttcatttggcatcatgtgaaggctgcactgaaattgttgttctacttcttcagaaaggtgctaatgttaactgcacagaccgctggggccgcactccattgtctgatgctcgtagcttcggtcatgatgggatttgcaagttattggaggctaggggtggaatagatccggtagggcttgactctcagcttccatgctatgaaatttcttacaaagaggtgaacatggacgaggcaacacttattggagaggaacttgctttgtggcaacagttgcgtcaccctaacatagtgcaattccttggggtcatgaagcaccctgatcgcttgatcttccttacagagtttctttgcaatggaagtttgcatgatatattgaaaaggaagggaagacttgatctgaaaaccgtcgttggttatgctttagatattgccagaaatgtgttacaagatgaagctggacgactcaaggtcacagattttgggttaagcaaaatcgcccaacacaatgatgtatctggttataaaatgactggaaggacaggctcatgtaagatatgccttttgactgaaaatccagtactgctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0004713 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0023052 GO:0030154 GO:0030435 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Pkinase Pkinase_Tyr

Protein Analysis

243

Amino Acids

26.99

Weight (kDa)

6.6

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013645)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27170 FvH4_7g14180
malus_domestica	MD07G1138800.v1.1
prunus_persica	Prupe.2G168200_v2.0.a1
pyrus_communis	pycom01g08770 pycom07g13590
rosa_chinensis	RchiOBHm_Chr1g0355091
rosa_laevigata	RLG00000028178
rosa_multiflora	Rmu_sc0003115.1_g000031 Rmu_sc0016725.1_g000005
rosa_roxburghii	Rroxscaffold_4G00300680
rosa_rugosa	Rorug01G0245000
rosa_samantha	Rh1AG257300 Rh1BG226600 Rh1CG240900 Rh1DG254200
rosa_wichuraiana	Rw0G011220 Rw1G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	666
AciI	CCGC	2 cut(s)	223, 232
AclWI	GGATC	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	723
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	2 cut(s)	57, 520
AhdI	GACNNNNNGTC	1 cut(s)	611
AluBI	AGCT	4 cut(s)	140, 258, 331, 599
AluI	AGCT	4 cut(s)	140, 258, 331, 599
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	32, 229
AsuHPI	GGTGA	4 cut(s)	13, 77, 373, 413
AvaII	GGWCC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	538
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	263
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BfaI	CTAG	1 cut(s)	294
BisI	GCNGC	2 cut(s)	166, 232
BlsI	GCNGC	2 cut(s)	167, 233
BmcAI	AGTACT	1 cut(s)	723
Bme18I	GGWCC	1 cut(s)	32
BmeRI	GACNNNNNGTC	1 cut(s)	611
BmgT120I	GGNCC	2 cut(s)	32, 229
BmiI	GGNNCC	2 cut(s)	108, 230
BmsI	GCATC	2 cut(s)	161, 238
BpiI	GAAGAC	1 cut(s)	538
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
BpuEI	CTTGAG	1 cut(s)	593
BsaJI	CCNNGG	1 cut(s)	442
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	39
Bse1I	ACTGG	2 cut(s)	679, 719
Bse3DI	GCAATG	1 cut(s)	502
BseDI	CCNNGG	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	2 cut(s)	39, 341
BseNI	ACTGG	2 cut(s)	679, 719
BseXI	GCAGC	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	225
BsgI	GTGCAG	2 cut(s)	151, 199
BshFI	GGCC	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	40, 311
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	307, 463, 471, 538
BspACI	CCGC	2 cut(s)	223, 232
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	2 cut(s)	38, 340
BspHI	TCATGA	2 cut(s)	265, 450
BspLI	GGNNCC	2 cut(s)	108, 230
BspPI	GGATC	1 cut(s)	302
BspQI	GCTCTTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	679, 719
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	4 cut(s)	307, 463, 471, 538
BssT1I	CCWWGG	1 cut(s)	442
Bst4CI	ACNGT	2 cut(s)	414, 550
Bst6I	CTCTTC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	415
BstDEI	CTNAG	2 cut(s)	25, 327
BstKTI	GATC	4 cut(s)	310, 466, 474, 541
BstMBI	GATC	4 cut(s)	307, 463, 471, 538
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 231, 415
BstV1I	GCAGC	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	538
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	168
CciI	TCATGA	2 cut(s)	265, 450
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	32, 229
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	722
CviAII	CATG	7 cut(s)	156, 266, 336, 367, 451, 509, 690
CviQI	GTAC	1 cut(s)	722
DdeI	CTNAG	2 cut(s)	25, 327
DpnI	GATC	4 cut(s)	309, 465, 473, 540
DpnII	GATC	4 cut(s)	307, 463, 471, 538
DriI	GACNNNNNGTC	1 cut(s)	611
Eam1104I	CTCTTC	1 cut(s)	147
Eam1105I	GACNNNNNGTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	7 cut(s)	159, 269, 339, 370, 454, 512, 693
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	7 cut(s)	155, 265, 335, 366, 450, 508, 689
Fnu4HI	GCNGC	2 cut(s)	166, 232
Fsp4HI	GCNGC	2 cut(s)	166, 232
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	2 cut(s)	166, 232
GsaI	CCCAGC	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	40, 311
HgaI	GACGC	1 cut(s)	407
Hin1II	CATG	7 cut(s)	159, 269, 339, 370, 454, 512, 693
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	3 cut(s)	112, 323, 606
HpaI	GTTAAC	1 cut(s)	211
HpaII	CCGG	2 cut(s)	40, 311
HphI	GGTGA	4 cut(s)	13, 77, 373, 413
Hpy166II	GTNNAC	3 cut(s)	21, 211, 364
Hpy188I	TCNGA	4 cut(s)	28, 195, 247, 543
Hpy188III	TCNNGA	2 cut(s)	266, 451
Hpy8I	GTNNAC	3 cut(s)	21, 211, 364
Hpy99I	CGWCG	1 cut(s)	554
HpyAV	CCTTC	4 cut(s)	23, 155, 520, 672
HpyCH4III	ACNGT	2 cut(s)	414, 550
HpyCH4V	TGCA	7 cut(s)	4, 168, 216, 279, 436, 495, 508
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 231, 415
HpyF3I	CTNAG	2 cut(s)	25, 327
Hsp92II	CATG	7 cut(s)	159, 269, 339, 370, 454, 512, 693
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	307, 463, 471, 538
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	2 cut(s)	82, 106
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	2 cut(s)	161, 238
MaeI	CTAG	1 cut(s)	294
MaeIII	GTNAC	4 cut(s)	65, 419, 585, 613
MalI	GATC	4 cut(s)	309, 465, 473, 540
MboI	GATC	4 cut(s)	307, 463, 471, 538
MboII	GAAGA	4 cut(s)	134, 182, 466, 543
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	3 cut(s)	174, 345, 437
MlyI	GAGTC	2 cut(s)	317, 600
MnlI	CCTC	5 cut(s)	34, 283, 352, 367, 385
MseI	TTAA	2 cut(s)	210, 629
MslI	CAYNNNNRTG	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	2 cut(s)	40, 311
MwoI	GCNNNNNNNGC	3 cut(s)	222, 231, 415
NdeII	GATC	4 cut(s)	307, 463, 471, 538
NlaIII	CATG	7 cut(s)	159, 269, 339, 370, 454, 512, 693
NlaIV	GGNNCC	2 cut(s)	108, 230
NmuCI	GTSAC	3 cut(s)	65, 419, 613
PagI	TCATGA	2 cut(s)	265, 450
PciSI	GCTCTTC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	167, 233
PleI	GAGTC	2 cut(s)	317, 600
PpsI	GAGTC	2 cut(s)	317, 600
PsiI	TTATAA	1 cut(s)	666
PspFI	CCCAGC	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	108, 230
PspPI	GGNCC	2 cut(s)	32, 229
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	723
RsaNI	GTAC	1 cut(s)	722
RseI	CAYNNNNRTG	1 cut(s)	651
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	2 cut(s)	210, 629
SatI	GCNGC	2 cut(s)	166, 232
Sau3AI	GATC	4 cut(s)	307, 463, 471, 538
Sau96I	GGNCC	2 cut(s)	32, 229
ScaI	AGTACT	1 cut(s)	723
SchI	GAGTC	2 cut(s)	317, 600
SfaNI	GCATC	2 cut(s)	161, 238
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	651
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
Sse9I	AATT	3 cut(s)	174, 345, 437
SsiI	CCGC	2 cut(s)	223, 232
SspMI	CTAG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	2 cut(s)	414, 550
TaqII	GACCGA	1 cut(s)	251
TasI	AATT	3 cut(s)	174, 345, 437
TatI	WGTACW	1 cut(s)	721
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	210, 629
Tru9I	TTAA	2 cut(s)	210, 629
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	3 cut(s)	65, 419, 613
TseI	GCWGC	1 cut(s)	165
Tsp45I	GTSAC	3 cut(s)	65, 419, 613
TspDTI	ATGAA	4 cut(s)	134, 357, 467, 609
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	1 cut(s)	345
XspI	CTAG	1 cut(s)	294
ZrmI	AGTACT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.