Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013645

Physical Location & Seq

Genomic Coordinates Forward (+)

21065395 .. 21068268

Gene Structure 2874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGCAGAAGCCTAAAAAGTTCACCTCAGAAGGTCCATACCGGCTGTTATATTGTTCAAGTAAGGGTGACAAAGCAGGGGTGGAGCAGGAGTTAGAGAAAGGTGTGGAGCCGAATCTTGGGGACTATGATAAGAGAACAGCTCTTCATTTGGCATCATGTGAAGGCTGCACTGAAATTGTTGTTCTACTTCTTCAGAAAGGTGCTAATGTTAACTGCACAGACCGCTGGGGCCGCACTCCATTGTCTGATGCTCGTAGCTTCGGTCATGATGGGATTTGCAAGATATTGGAGGCTAGGGGTGGAATAGATCCGGTAGGGCTTGACTCTCAGCTTCCATGCTATGAAATTTCTTACAAAGAGGTGAACATGGACGAGGCAACACTTATTGGAGAGGAACTTGCTTTGTGGCAACAGTTGCGTCACCCTAACATAGTGCAATTCCTTGGGGTCATGAAGCACCCTGATCGCTTGATCTTCCTTACAGAGTTTCTTTGCAATGGAAGTTTGCATGATATATTGAAAAGGAAGGGAAGACTTGATCTGAAAACCGTTGTTGGTTATGCTTTAGATATTGCCAGAAATGTGTTACAAGATGAAGCTGGACGCCTCAAGGTCACAGATTTTGGGTTAAGCAAAATCGCCCAACACAATGATGTATCTGGTTATAAAATGACTGGAAGGACAGGCTCATGTAAGATATGCCTTTTGACTGAAAATCCAATGTTTCTAGGAGGACCACCAAATCTGGCAGAGGATCCTGAACAAATTGCAGACAAGAGAGCATATGAAGATTCAAGACCACCTCTCTACTCTTATTTGTTCCCGGAACCAATTAGAAAGCTTCTTAAAGAATGCTGGCACCCGAATCCAGATTGCCGACCTACATTCGAAGAGATCATTGTGGAGTTGGAGTCTATTCAAGGGTCTATACAAGACAACTTTCATTTCAAGAAGAGATTGGGAACCTGTAGTAGTAGGTGTGTCATCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0004713 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0023052 GO:0030154 GO:0030435 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Pkinase Pkinase_Tyr

Protein Analysis

330

Amino Acids

37.06

Weight (kDa)

6.11

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	15 - 102	5.1e-12	Ankyrin repeats (3 copies)
Ank_5	PF13857	32 - 81	1.9e-06	Ankyrin repeats (many copies)
Ank	PF00023	44 - 75	1e-08	Ankyrin repeat
Pkinase	PF00069	119 - 191	1.7e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	126 - 193	1.4e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0013645)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27170 FvH4_7g14180
malus_domestica	MD07G1138800.v1.1
prunus_persica	Prupe.2G168200_v2.0.a1
pyrus_communis	pycom01g08770 pycom07g13590
rosa_chinensis	RchiOBHm_Chr1g0355091
rosa_laevigata	RLG00000028178
rosa_multiflora	Rmu_sc0003115.1_g000031 Rmu_sc0016725.1_g000005
rosa_roxburghii	Rroxscaffold_4G00300680
rosa_rugosa	Rorug01G0245000
rosa_samantha	Rh1AG257300 Rh1BG226600 Rh1CG240900 Rh1DG254200
rosa_wichuraiana	Rw0G011220 Rw1G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	666
AccB1I	GGYRCC	1 cut(s)	858
AciI	CCGC	2 cut(s)	223, 232
AclWI	GGATC	3 cut(s)	302, 749, 762
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	604
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	5 cut(s)	57, 520, 795, 920, 949
AluBI	AGCT	5 cut(s)	140, 258, 331, 599, 841
AluI	AGCT	5 cut(s)	140, 258, 331, 599, 841
AlwI	GGATC	3 cut(s)	302, 749, 762
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	345
AspS9I	GGNCC	3 cut(s)	32, 229, 734
AsuC2I	CCSGG	1 cut(s)	824
AsuHPI	GGTGA	4 cut(s)	13, 77, 373, 413
AsuII	TTCGAA	1 cut(s)	888
AvaII	GGWCC	2 cut(s)	32, 734
BamHI	GGATCC	1 cut(s)	754
BanI	GGYRCC	1 cut(s)	858
BbsI	GAAGAC	1 cut(s)	538
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	263
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BcnI	CCSGG	1 cut(s)	824
BfaI	CTAG	2 cut(s)	294, 728
BfmI	CTRYAG	1 cut(s)	967
BisI	GCNGC	2 cut(s)	166, 232
BlsI	GCNGC	2 cut(s)	167, 233
Bme1390I	CCNGG	1 cut(s)	824
Bme18I	GGWCC	2 cut(s)	32, 734
BmgT120I	GGNCC	3 cut(s)	32, 229, 734
BmiI	GGNNCC	6 cut(s)	108, 230, 756, 828, 860, 964
BmrFI	CCNGG	1 cut(s)	824
BmsI	GCATC	2 cut(s)	161, 238
BpiI	GAAGAC	1 cut(s)	538
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
Bpu14I	TTCGAA	1 cut(s)	888
BpuEI	CTTGAG	1 cut(s)	593
BpuMI	CCSGG	1 cut(s)	824
BsaHI	GRCGYC	1 cut(s)	604
BsaJI	CCNNGG	1 cut(s)	442
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 896, 926
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	679
Bse3DI	GCAATG	1 cut(s)	502
BseDI	CCNNGG	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	2 cut(s)	39, 341
BseNI	ACTGG	1 cut(s)	679
BseXI	GCAGC	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	225
BsgI	GTGCAG	2 cut(s)	151, 199
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	858
BsiSI	CCGG	3 cut(s)	40, 311, 824
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	857
BsnI	GGCC	1 cut(s)	231
Bsp119I	TTCGAA	1 cut(s)	888
Bsp143I	GATC	6 cut(s)	307, 463, 471, 538, 754, 894
BspACI	CCGC	2 cut(s)	223, 232
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	2 cut(s)	38, 340
BspHI	TCATGA	2 cut(s)	265, 450
BspLI	GGNNCC	6 cut(s)	108, 230, 756, 828, 860, 964
BspPI	GGATC	3 cut(s)	302, 749, 762
BspQI	GCTCTTC	1 cut(s)	147
BspT104I	TTCGAA	1 cut(s)	888
BspT107I	GGYRCC	1 cut(s)	858
BsrDI	GCAATG	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	679
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	6 cut(s)	307, 463, 471, 538, 754, 894
BssNI	GRCGYC	1 cut(s)	604
BssT1I	CCWWGG	1 cut(s)	442
Bst4CI	ACNGT	2 cut(s)	414, 550
Bst6I	CTCTTC	3 cut(s)	147, 885, 947
BstACI	GRCGYC	1 cut(s)	604
BstAPI	GCANNNNNTGC	1 cut(s)	415
BstBI	TTCGAA	1 cut(s)	888
BstC8I	GCNNGC	1 cut(s)	857
BstDEI	CTNAG	2 cut(s)	25, 327
BstKTI	GATC	6 cut(s)	310, 466, 474, 541, 757, 897
BstMBI	GATC	6 cut(s)	307, 463, 471, 538, 754, 894
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 231, 415
BstSCI	CCNGG	1 cut(s)	822
BstSFI	CTRYAG	1 cut(s)	967
BstV1I	GCAGC	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	538
BstX2I	RGATCY	2 cut(s)	307, 754
BstYI	RGATCY	2 cut(s)	307, 754
BsuRI	GGCC	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	857
CciI	TCATGA	2 cut(s)	265, 450
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	3 cut(s)	32, 229, 734
CseI	GACGC	2 cut(s)	407, 612
CviAII	CATG	7 cut(s)	156, 266, 336, 367, 451, 509, 690
DdeI	CTNAG	2 cut(s)	25, 327
DpnI	GATC	6 cut(s)	309, 465, 473, 540, 756, 896
DpnII	GATC	6 cut(s)	307, 463, 471, 538, 754, 894
Eam1104I	CTCTTC	3 cut(s)	147, 885, 947
EarI	CTCTTC	3 cut(s)	147, 885, 947
Eco130I	CCWWGG	1 cut(s)	442
Eco47I	GGWCC	2 cut(s)	32, 734
Eco57I	CTGAAG	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	7 cut(s)	159, 269, 339, 370, 454, 512, 693
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	7 cut(s)	155, 265, 335, 366, 450, 508, 689
FauNDI	CATATG	1 cut(s)	784
Fnu4HI	GCNGC	2 cut(s)	166, 232
Fsp4HI	GCNGC	2 cut(s)	166, 232
FspBI	CTAG	2 cut(s)	294, 728
GluI	GCNGC	2 cut(s)	166, 232
GsaI	CCCAGC	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	3 cut(s)	40, 311, 824
HgaI	GACGC	2 cut(s)	407, 612
Hin1I	GRCGYC	1 cut(s)	604
Hin1II	CATG	7 cut(s)	159, 269, 339, 370, 454, 512, 693
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	839
HinfI	GANTC	5 cut(s)	112, 323, 791, 865, 911
HpaI	GTTAAC	1 cut(s)	211
HpaII	CCGG	3 cut(s)	40, 311, 824
HphI	GGTGA	4 cut(s)	13, 77, 373, 413
Hpy166II	GTNNAC	3 cut(s)	21, 211, 364
Hpy188I	TCNGA	4 cut(s)	28, 195, 247, 543
Hpy188III	TCNNGA	6 cut(s)	266, 451, 758, 795, 869, 949
Hpy8I	GTNNAC	3 cut(s)	21, 211, 364
HpyAV	CCTTC	4 cut(s)	23, 155, 520, 672
HpyCH4III	ACNGT	2 cut(s)	414, 550
HpyCH4V	TGCA	8 cut(s)	4, 168, 216, 279, 436, 495, 508, 770
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 231, 415
HpyF3I	CTNAG	2 cut(s)	25, 327
Hsp92I	GRCGYC	1 cut(s)	604
Hsp92II	CATG	7 cut(s)	159, 269, 339, 370, 454, 512, 693
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	6 cut(s)	307, 463, 471, 538, 754, 894
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	2 cut(s)	82, 106
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	2 cut(s)	161, 238
MaeI	CTAG	2 cut(s)	294, 728
MaeIII	GTNAC	4 cut(s)	65, 419, 585, 613
MalI	GATC	6 cut(s)	309, 465, 473, 540, 756, 896
MboI	GATC	6 cut(s)	307, 463, 471, 538, 754, 894
MboII	GAAGA	7 cut(s)	134, 182, 466, 543, 800, 902, 964
MflI	RGATCY	2 cut(s)	307, 754
MluCI	AATT	5 cut(s)	174, 345, 437, 765, 831
MlyI	GAGTC	2 cut(s)	317, 920
MmeI	TCCRAC	1 cut(s)	888
MnlI	CCTC	9 cut(s)	34, 283, 352, 367, 385, 617, 725, 745, 813
MseI	TTAA	4 cut(s)	210, 629, 846, 991
MslI	CAYNNNNRTG	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	3 cut(s)	40, 311, 824
MspR9I	CCNGG	1 cut(s)	824
Mva1269I	GAATGC	1 cut(s)	857
MwoI	GCNNNNNNNGC	3 cut(s)	222, 231, 415
NciI	CCSGG	1 cut(s)	824
NdeI	CATATG	1 cut(s)	784
NdeII	GATC	6 cut(s)	307, 463, 471, 538, 754, 894
NlaIII	CATG	7 cut(s)	159, 269, 339, 370, 454, 512, 693
NlaIV	GGNNCC	6 cut(s)	108, 230, 756, 828, 860, 964
NmuCI	GTSAC	3 cut(s)	65, 419, 613
NspV	TTCGAA	1 cut(s)	888
PagI	TCATGA	2 cut(s)	265, 450
PciSI	GCTCTTC	1 cut(s)	147
PctI	GAATGC	1 cut(s)	857
PfeI	GAWTC	3 cut(s)	112, 791, 865
PfoI	TCCNGGA	1 cut(s)	822
PkrI	GCNGC	2 cut(s)	167, 233
PleI	GAGTC	2 cut(s)	317, 919
PpsI	GAGTC	2 cut(s)	317, 919
PsiI	TTATAA	1 cut(s)	666
PspFI	CCCAGC	1 cut(s)	225
PspN4I	GGNNCC	6 cut(s)	108, 230, 756, 828, 860, 964
PspPI	GGNCC	3 cut(s)	32, 229, 734
PsuI	RGATCY	2 cut(s)	307, 754
RseI	CAYNNNNRTG	1 cut(s)	651
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	4 cut(s)	210, 629, 846, 991
SatI	GCNGC	2 cut(s)	166, 232
Sau3AI	GATC	6 cut(s)	307, 463, 471, 538, 754, 894
Sau96I	GGNCC	3 cut(s)	32, 229, 734
SchI	GAGTC	2 cut(s)	317, 920
ScrFI	CCNGG	1 cut(s)	824
SfaNI	GCATC	2 cut(s)	161, 238
SfcI	CTRYAG	1 cut(s)	967
SfuI	TTCGAA	1 cut(s)	888
SinI	GGWCC	2 cut(s)	32, 734
SmiMI	CAYNNNNRTG	1 cut(s)	651
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
Sse9I	AATT	5 cut(s)	174, 345, 437, 765, 831
SsiI	CCGC	2 cut(s)	223, 232
SspMI	CTAG	2 cut(s)	294, 728
StyD4I	CCNGG	1 cut(s)	822
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	2 cut(s)	414, 550
TaqI	TCGA	1 cut(s)	888
TaqII	GACCGA	1 cut(s)	251
TasI	AATT	5 cut(s)	174, 345, 437, 765, 831
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	3 cut(s)	112, 791, 865
Tru1I	TTAA	4 cut(s)	210, 629, 846, 991
Tru9I	TTAA	4 cut(s)	210, 629, 846, 991
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	3 cut(s)	65, 419, 613
TseI	GCWGC	1 cut(s)	165
Tsp45I	GTSAC	3 cut(s)	65, 419, 613
TspDTI	ATGAA	6 cut(s)	134, 357, 467, 609, 801, 932
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	32, 734
XapI	RAATTY	1 cut(s)	345
XspI	CTAG	2 cut(s)	294, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.