Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0013645

Physical Location & Seq

Genomic Coordinates Forward (+)

19765961 .. 19769208

Gene Structure 3248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028178

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAAGATTGCATACCTACATCATCACTGTCATCAAAGAAGCCTAAAAAGTTCACCTCAGAAGGTCCATACCGGCTGTTATATTGTTCAAGTAAGGGTGACAAAGCAGGGGTGGAGCAGGAGTTAGAGAAAGGTGTGGAGCCGAATCTTGGGGACTATGATAAGAGAACAGCTCTTCATTTGGCATCATGTGAAGGCTGCACTGAAATTGTTGTTCTACTTCTTCAGAAAGGTGCTAATGTTAACTGCACAGACCGCTGGGGCCGCACTCCATTGTCTGATGCTCGTAGCTTCGGTCATGATGGGATTTGCAAGATATTGGAGGCTAGGGGTGGAATAGATCCGGTAGGGCTTGACTCTCAGCTTCCATGCTATGAAATTTCTTACAAAGAGGTGAACATGGACGAGGCAACACTTATTGGAGAGGGAGCATATGGTGAAATTTATTTAGTAAAGTGGCGTGGTACAGAAGTTGCTGCTAAAACAATTCGTCCCTCCATCGCTTCTAAACCTACTGTGAAGGCTCTCTTTCTGAAGGAACTTGCTTTGTGGCAACAGTTGCGTCACCCTAACATAGTGCAATTCCTTGGTGTCATGAAGCACCCTGATCGCTTGATCTTCCTTACAGAGTTTCTTTGCAATGGAAGTTTGCATGATATATTGAAAAGGAAGGGAAGACTTGATCTGAAAACCGTCGTTGGTTATGCTTTAGATATTGCCAGAGGTATGAATTATCTCCATCAGCATAAACCGCGCCCTATAATCCATAGAGATCTTACACCAAGAAATGTGTTACAAGATGAAGCTGGACGCCTCAAGGTCACAGATTTTGGGTTAAGCAAAATCGCCCAACACAATGATGTGTCTGGTTATAAAATGACTGGAAGGACAGGCTCATATCGGTATATGGCACCTGAGGTTTATCGTCGAGAATCATATGGGAAGAGTATCGATATCTTCTCATTTGCTCTATTGGTGCATGAGATGTTTCTAGGAGGACCACCAAATCTGGCAGAGGATCCTGAACAAATTGCAGACAAGAGAGCATATGAAGATTCAAGACCACCTCTCTACTCTTATTTGTTCCCGGAACCAATTAGAAAGCTTCTTAAAGAATGCTGGCACCCGAATCCAGATTGCCGACCTACATTCGAAGAGATCATTGTGGAGTTGGAGTCTATTCAAGGGTCTATACAAGACAACTGTCATTTCAAGAAAAGATTGGGAACCTGTAATATTAGGTGTGTCATCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0004713 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0023052 GO:0030154 GO:0030435 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Pkinase Pkinase_Tyr

Protein Analysis

419

Amino Acids

47.2

Weight (kDa)

8.13

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	26 - 113	7.7e-12	Ankyrin repeats (3 copies)
Ank_5	PF13857	43 - 92	2.8e-06	Ankyrin repeats (many copies)
Ank	PF00023	55 - 86	1.4e-08	Ankyrin repeat
Pkinase	PF00069	138 - 388	3e-52	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	139 - 391	1.2e-53	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013645)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27170 FvH4_7g14180
malus_domestica	MD07G1138800.v1.1
prunus_persica	Prupe.2G168200_v2.0.a1
pyrus_communis	pycom01g08770 pycom07g13590
rosa_chinensis	RchiOBHm_Chr1g0355091
rosa_laevigata	RLG00000028178
rosa_multiflora	Rmu_sc0003115.1_g000031 Rmu_sc0016725.1_g000005
rosa_roxburghii	Rroxscaffold_4G00300680
rosa_rugosa	Rorug01G0245000
rosa_samantha	Rh1AG257300 Rh1BG226600 Rh1CG240900 Rh1DG254200
rosa_wichuraiana	Rw0G011220 Rw1G022690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	873
AccB1I	GGYRCC	2 cut(s)	910, 1122
AccII	CGCG	1 cut(s)	754
AciI	CCGC	3 cut(s)	256, 265, 752
AclWI	GGATC	3 cut(s)	335, 1013, 1026
AcsI	RAATTY	2 cut(s)	378, 441
AcuI	CTGAAG	2 cut(s)	209, 554
AcyI	GRCGYC	1 cut(s)	811
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	5 cut(s)	90, 664, 1059, 1184, 1213
AluBI	AGCT	5 cut(s)	173, 291, 364, 806, 1105
AluI	AGCT	5 cut(s)	173, 291, 364, 806, 1105
AlwI	GGATC	3 cut(s)	335, 1013, 1026
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	2 cut(s)	198, 476
ApoI	RAATTY	2 cut(s)	378, 441
AspLEI	GCGC	1 cut(s)	756
AspS9I	GGNCC	3 cut(s)	65, 262, 998
AsuC2I	CCSGG	1 cut(s)	1088
AsuHPI	GGTGA	5 cut(s)	46, 110, 406, 449, 557
AsuII	TTCGAA	1 cut(s)	1152
AvaII	GGWCC	2 cut(s)	65, 998
AxyI	CCTNAGG	1 cut(s)	915
BaeI	ACNNNNGTAYC	2 cut(s)	456, 489
BamHI	GGATCC	1 cut(s)	1018
BanI	GGYRCC	2 cut(s)	910, 1122
BarI	GAAGNNNNNNTAC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	682
BbvI	GCAGC	2 cut(s)	185, 463
BccI	CCATC	3 cut(s)	296, 506, 747
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BcnI	CCSGG	1 cut(s)	1088
BfaI	CTAG	2 cut(s)	327, 992
BglII	AGATCT	1 cut(s)	772
BisI	GCNGC	3 cut(s)	199, 265, 477
BlsI	GCNGC	3 cut(s)	200, 266, 478
Bme1390I	CCNGG	1 cut(s)	1088
Bme18I	GGWCC	2 cut(s)	65, 998
BmgT120I	GGNCC	3 cut(s)	65, 262, 998
BmiI	GGNNCC	7 cut(s)	141, 263, 912, 1020, 1092, 1124, 1228
BmrFI	CCNGG	1 cut(s)	1088
BmsI	GCATC	2 cut(s)	194, 271
BoxI	GACNNNNGTC	1 cut(s)	1203
BpiI	GAAGAC	1 cut(s)	682
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
Bpu14I	TTCGAA	1 cut(s)	1152
BpuEI	CTTGAG	1 cut(s)	800
BpuMI	CCSGG	1 cut(s)	1088
Bsa29I	ATCGAT	1 cut(s)	951
BsaHI	GRCGYC	1 cut(s)	811
BsaJI	CCNNGG	1 cut(s)	586
BsaWI	WCCGGW	1 cut(s)	343
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 1160, 1190
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse118I	RCCGGY	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	886
Bse21I	CCTNAGG	1 cut(s)	915
Bse3DI	GCAATG	1 cut(s)	646
BseCI	ATCGAT	1 cut(s)	951
BseDI	CCNNGG	1 cut(s)	586
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	646
BseMII	CTCAG	3 cut(s)	72, 374, 906
BseNI	ACTGG	1 cut(s)	886
BseXI	GCAGC	2 cut(s)	185, 463
BseYI	CCCAGC	1 cut(s)	258
BsgI	GTGCAG	2 cut(s)	184, 232
Bsh1236I	CGCG	1 cut(s)	754
BshFI	GGCC	1 cut(s)	264
BshNI	GGYRCC	2 cut(s)	910, 1122
BshVI	ATCGAT	1 cut(s)	951
BsiSI	CCGG	3 cut(s)	73, 344, 1088
BslFI	GGGAC	2 cut(s)	167, 477
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmFI	GGGAC	2 cut(s)	167, 477
BsmI	GAATGC	1 cut(s)	1121
BsnI	GGCC	1 cut(s)	264
Bsp119I	TTCGAA	1 cut(s)	1152
Bsp143I	GATC	7 cut(s)	340, 607, 615, 682, 772, 1018, 1158
BspACI	CCGC	3 cut(s)	256, 265, 752
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	3 cut(s)	71, 373, 907
BspDI	ATCGAT	1 cut(s)	951
BspFNI	CGCG	1 cut(s)	754
BspHI	TCATGA	2 cut(s)	298, 594
BspLI	GGNNCC	7 cut(s)	141, 263, 912, 1020, 1092, 1124, 1228
BspPI	GGATC	3 cut(s)	335, 1013, 1026
BspQI	GCTCTTC	1 cut(s)	180
BspT104I	TTCGAA	1 cut(s)	1152
BspT107I	GGYRCC	2 cut(s)	910, 1122
BsrDI	GCAATG	1 cut(s)	646
BsrFI	RCCGGY	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	886
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	586
BssMI	GATC	7 cut(s)	340, 607, 615, 682, 772, 1018, 1158
BssNI	GRCGYC	1 cut(s)	811
BssT1I	CCWWGG	1 cut(s)	586
Bst4CI	ACNGT	5 cut(s)	30, 517, 558, 694, 1205
Bst6I	CTCTTC	3 cut(s)	180, 938, 1149
BstACI	GRCGYC	1 cut(s)	811
BstAPI	GCANNNNNTGC	1 cut(s)	559
BstBI	TTCGAA	1 cut(s)	1152
BstC8I	GCNNGC	1 cut(s)	1121
BstDEI	CTNAG	3 cut(s)	58, 360, 915
BstFNI	CGCG	1 cut(s)	754
BstHHI	GCGC	1 cut(s)	756
BstKTI	GATC	7 cut(s)	343, 610, 618, 685, 775, 1021, 1161
BstMBI	GATC	7 cut(s)	340, 607, 615, 682, 772, 1018, 1158
BstMWI	GCNNNNNNNGC	4 cut(s)	255, 264, 559, 751
BstPAI	GACNNNNGTC	1 cut(s)	1203
BstSCI	CCNGG	1 cut(s)	1086
BstUI	CGCG	1 cut(s)	754
BstV1I	GCAGC	2 cut(s)	185, 463
BstV2I	GAAGAC	1 cut(s)	682
BstX2I	RGATCY	3 cut(s)	340, 772, 1018
BstYI	RGATCY	3 cut(s)	340, 772, 1018
Bsu15I	ATCGAT	1 cut(s)	951
Bsu36I	CCTNAGG	1 cut(s)	915
BsuRI	GGCC	1 cut(s)	264
BsuTUI	ATCGAT	1 cut(s)	951
BtgZI	GCGATG	1 cut(s)	484
BtsIMutI	CAGTG	2 cut(s)	26, 201
Cac8I	GCNNGC	1 cut(s)	1121
CciI	TCATGA	2 cut(s)	298, 594
CfoI	GCGC	1 cut(s)	756
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	3 cut(s)	65, 262, 998
ClaI	ATCGAT	1 cut(s)	951
CseI	GACGC	2 cut(s)	551, 819
Csp6I	GTAC	1 cut(s)	465
CviAII	CATG	7 cut(s)	189, 299, 369, 400, 595, 653, 980
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	3 cut(s)	58, 360, 915
DpnI	GATC	7 cut(s)	342, 609, 617, 684, 774, 1020, 1160
DpnII	GATC	7 cut(s)	340, 607, 615, 682, 772, 1018, 1158
Eam1104I	CTCTTC	3 cut(s)	180, 938, 1149
EarI	CTCTTC	3 cut(s)	180, 938, 1149
Eco130I	CCWWGG	1 cut(s)	586
Eco32I	GATATC	1 cut(s)	955
Eco47I	GGWCC	2 cut(s)	65, 998
Eco57I	CTGAAG	2 cut(s)	209, 554
Eco81I	CCTNAGG	1 cut(s)	915
EcoRV	GATATC	1 cut(s)	955
EcoT14I	CCWWGG	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	586
FaeI	CATG	7 cut(s)	192, 302, 372, 403, 598, 656, 983
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	2 cut(s)	167, 477
FatI	CATG	7 cut(s)	188, 298, 368, 399, 594, 652, 979
FauNDI	CATATG	3 cut(s)	433, 937, 1048
Fnu4HI	GCNGC	3 cut(s)	199, 265, 477
Fsp4HI	GCNGC	3 cut(s)	199, 265, 477
FspBI	CTAG	2 cut(s)	327, 992
GlaI	GCGC	1 cut(s)	755
GluI	GCNGC	3 cut(s)	199, 265, 477
GsaI	CCCAGC	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	3 cut(s)	73, 344, 1088
HgaI	GACGC	2 cut(s)	551, 819
HhaI	GCGC	1 cut(s)	756
Hin1I	GRCGYC	1 cut(s)	811
Hin1II	CATG	7 cut(s)	192, 302, 372, 403, 598, 656, 983
Hin6I	GCGC	1 cut(s)	754
HinP1I	GCGC	1 cut(s)	754
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	1103
HinfI	GANTC	6 cut(s)	145, 356, 932, 1055, 1129, 1175
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	3 cut(s)	73, 344, 1088
HphI	GGTGA	5 cut(s)	46, 110, 406, 449, 557
Hpy166II	GTNNAC	3 cut(s)	54, 244, 397
Hpy188I	TCNGA	5 cut(s)	61, 228, 280, 534, 687
Hpy188III	TCNNGA	7 cut(s)	299, 595, 929, 1022, 1059, 1133, 1213
Hpy8I	GTNNAC	3 cut(s)	54, 244, 397
Hpy99I	CGWCG	2 cut(s)	698, 930
HpyAV	CCTTC	6 cut(s)	56, 188, 514, 529, 664, 879
HpyCH4III	ACNGT	5 cut(s)	30, 517, 558, 694, 1205
HpyCH4V	TGCA	9 cut(s)	12, 201, 249, 312, 580, 639, 652, 979, 1034
HpyF10VI	GCNNNNNNNGC	4 cut(s)	255, 264, 559, 751
HpyF3I	CTNAG	3 cut(s)	58, 360, 915
Hsp92I	GRCGYC	1 cut(s)	811
Hsp92II	CATG	7 cut(s)	192, 302, 372, 403, 598, 656, 983
HspAI	GCGC	1 cut(s)	754
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	7 cut(s)	340, 607, 615, 682, 772, 1018, 1158
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	3 cut(s)	115, 139, 428
Lsp1109I	GCAGC	2 cut(s)	185, 463
LweI	GCATC	2 cut(s)	194, 271
MaeI	CTAG	2 cut(s)	327, 992
MaeIII	GTNAC	4 cut(s)	98, 563, 792, 820
MalI	GATC	7 cut(s)	342, 609, 617, 684, 774, 1020, 1160
MboI	GATC	7 cut(s)	340, 607, 615, 682, 772, 1018, 1158
MboII	GAAGA	9 cut(s)	17, 167, 215, 610, 687, 949, 955, 1064, 1166
MflI	RGATCY	3 cut(s)	340, 772, 1018
MluCI	AATT	8 cut(s)	207, 378, 441, 486, 581, 730, 1029, 1095
MlyI	GAGTC	2 cut(s)	350, 1184
MmeI	TCCRAC	1 cut(s)	1152
MseI	TTAA	4 cut(s)	243, 836, 1110, 1255
MslI	CAYNNNNRTG	1 cut(s)	858
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	3 cut(s)	73, 344, 1088
MspR9I	CCNGG	1 cut(s)	1088
Mva1269I	GAATGC	1 cut(s)	1121
MvnI	CGCG	1 cut(s)	754
MwoI	GCNNNNNNNGC	4 cut(s)	255, 264, 559, 751
NciI	CCSGG	1 cut(s)	1088
NdeI	CATATG	3 cut(s)	433, 937, 1048
NdeII	GATC	7 cut(s)	340, 607, 615, 682, 772, 1018, 1158
NlaIII	CATG	7 cut(s)	192, 302, 372, 403, 598, 656, 983
NlaIV	GGNNCC	7 cut(s)	141, 263, 912, 1020, 1092, 1124, 1228
NmuCI	GTSAC	3 cut(s)	98, 563, 820
NspV	TTCGAA	1 cut(s)	1152
PagI	TCATGA	2 cut(s)	298, 594
PciSI	GCTCTTC	1 cut(s)	180
PctI	GAATGC	1 cut(s)	1121
PfeI	GAWTC	4 cut(s)	145, 932, 1055, 1129
PfoI	TCCNGGA	1 cut(s)	1086
PkrI	GCNGC	3 cut(s)	200, 266, 478
PleI	GAGTC	2 cut(s)	350, 1183
PpsI	GAGTC	2 cut(s)	350, 1183
PshAI	GACNNNNGTC	1 cut(s)	1203
PsiI	TTATAA	1 cut(s)	873
PspFI	CCCAGC	1 cut(s)	258
PspN4I	GGNNCC	7 cut(s)	141, 263, 912, 1020, 1092, 1124, 1228
PspPI	GGNCC	3 cut(s)	65, 262, 998
PsuI	RGATCY	3 cut(s)	340, 772, 1018
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
RseI	CAYNNNNRTG	1 cut(s)	858
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	4 cut(s)	243, 836, 1110, 1255
SatI	GCNGC	3 cut(s)	199, 265, 477
Sau3AI	GATC	7 cut(s)	340, 607, 615, 682, 772, 1018, 1158
Sau96I	GGNCC	3 cut(s)	65, 262, 998
SchI	GAGTC	2 cut(s)	350, 1184
ScrFI	CCNGG	1 cut(s)	1088
SfaNI	GCATC	2 cut(s)	194, 271
SfuI	TTCGAA	1 cut(s)	1152
SinI	GGWCC	2 cut(s)	65, 998
SmiMI	CAYNNNNRTG	1 cut(s)	858
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	8 cut(s)	207, 378, 441, 486, 581, 730, 1029, 1095
SsiI	CCGC	3 cut(s)	256, 265, 752
SspI	AATATT	1 cut(s)	1237
SspMI	CTAG	2 cut(s)	327, 992
StyD4I	CCNGG	1 cut(s)	1086
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	5 cut(s)	30, 517, 558, 694, 1205
TaqI	TCGA	3 cut(s)	928, 951, 1152
TaqII	GACCGA	1 cut(s)	284
TasI	AATT	8 cut(s)	207, 378, 441, 486, 581, 730, 1029, 1095
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	4 cut(s)	145, 932, 1055, 1129
Tru1I	TTAA	4 cut(s)	243, 836, 1110, 1255
Tru9I	TTAA	4 cut(s)	243, 836, 1110, 1255
TscAI	CASTG	2 cut(s)	33, 208
TseFI	GTSAC	3 cut(s)	98, 563, 820
TseI	GCWGC	2 cut(s)	198, 476
Tsp45I	GTSAC	3 cut(s)	98, 563, 820
TspDTI	ATGAA	6 cut(s)	167, 390, 611, 743, 816, 1065
TspRI	CASTG	2 cut(s)	33, 208
VpaK11BI	GGWCC	2 cut(s)	65, 998
XapI	RAATTY	2 cut(s)	378, 441
XspI	CTAG	2 cut(s)	327, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.