FvH4_3g29420

Meiotic recombination protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
22503702 .. 22507062
3361 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29420.t1

Sequence Viewer

Length: 1128 bp
ATGGAGGGAAAGCGGTCAAGAGGGAGCTCACAGCCCCGTCCCCGCGAGTTGCTTCGCAAAATCAAAGAATTCACTCGAGCTCTTGTGGAAGATCTCACCAACGGCCGCCCACCGCAGATTCTCATCGATCGCTTCCGAAATTACTGCTCCGATTCCTCCGCAAATTGCTATTGCAGCTCTGATTTGCCAAAAGGGAAGGAGGCGCTGACTCTTCGAAAAGAAAGCCATGTGCATAGAATAGATGTTCTGCTTAGGGTTCTTGTAATTGTTCAGCAACTTCTGCAAGAAAACAGACATGGGTCTAAAAGAGATATCTATTACATGCACCCTTCGGTATTTTCAGATCAATCAGTTGTAGACCGTGCAATCAATGACATATGCATCCTTCTGCAGTGTAGTCGCCACAATTTGAATGTGGTGTCTGTAGGAAAGGGGTTGGTAATGGGTTGGTTAAGGTTTGCAGAGGCTGGAAACATATCTGATTGCATAAATAGACCAAACACTGCCTACCCTGTTCCAGTTCATGTTGAAGAGGTCAAAGATATTGTTAGTGTTGCCCAGTACATAATTATTGTGGAGAAAGAATCAGTTTTTCAACGATTGGCAAATGACCAGTTTTGTAACACAAACCACTGCATTGTCATCACTGGACGTGGATATCCTGATATTTCCACAAGAAGGTTGAGTCCTTTTACAATTTTCAAATGGGAGTTTCTGGGGCTCCTTGTTGATACTTTAAATCTCCCTGTCTATTGCTTGGTAGATTGTGATCCCTACGGTTTTGACATCTTGTCCACATATCGGTTTGGTTCTCTGCAAATGGCCTATGATGCAAAATTTCTACGGGTCCCGGAGATAATTTGGCTCGGAGCCTTCCCTTTGGATGCAGAGAAGTACCATCTTCCACAACAGTGTCTCCTTCCTTTGACTGCAGAAGACAAGAGGAAAACTGAAGCCATGTTACAGAGATGCTACTTAGAAAGAGAAGTGCCACACTGGAGATTGGAGCTACAGTTGATGCTGAAAAGCGGAGTGAAATTTGAGCTAGAAGCATTATCTGCGCATGCACTTTCCTTTCTGTCGATGGAGTACATACCATCTAAAATTCAAGGTGGAATGTTCATCTAA

Protein Analysis

376

Amino Acids

43.07

Weight (kDa)

8.2

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP6A_N PF04406 79 - 139 3e-21 Type IIB DNA topoisomerase
TOP6A-Spo11_Toprim PF21180 188 - 369 1.8e-59 Topoisomerase 6 subunit A/Spo11, Toprim domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009922)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1062
AccI GTMKAC 1 cut(s) 357
AccII CGCG 1 cut(s) 45
AciI CCGC 6 cut(s) 13, 43, 106, 113, 159, 1029
AclWI GGATC 1 cut(s) 764
AcoI YGGCCR 1 cut(s) 103
AcsI RAATTY 4 cut(s) 68, 836, 1037, 1104
AcuI CTGAAG 1 cut(s) 972
AfaI GTAC 3 cut(s) 563, 896, 1091
AfiI CCNNNNNNNGG 2 cut(s) 678, 801
AgsI TTSAA 5 cut(s) 412, 530, 596, 703, 1109
AhdI GACNNNNNGTC 1 cut(s) 790
AjiI CACGTC 1 cut(s) 653
AleI CACNNNNGTG 1 cut(s) 910
AluBI AGCT 5 cut(s) 27, 80, 177, 1009, 1045
AluI AGCT 5 cut(s) 27, 80, 177, 1009, 1045
Alw21I GWGCWC 2 cut(s) 29, 82
Alw26I GTCTC 1 cut(s) 920
AlwI GGATC 1 cut(s) 764
AlwNI CAGNNNCTG 1 cut(s) 467
Ama87I CYCGRG 1 cut(s) 75
AoxI GGCC 2 cut(s) 103, 822
ApeKI GCWGC 1 cut(s) 174
ApoI RAATTY 4 cut(s) 68, 836, 1037, 1104
AspLEI GCGC 2 cut(s) 205, 1063
AspS9I GGNCC 1 cut(s) 847
AsuC2I CCSGG 1 cut(s) 851
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 75
AvaII GGWCC 1 cut(s) 847
BanII GRGCYC 3 cut(s) 29, 82, 723
BarI GAAGNNNNNNTAC 2 cut(s) 945, 977
BbsI GAAGAC 1 cut(s) 942
Bbv12I GWGCWC 2 cut(s) 29, 82
BbvI GCAGC 1 cut(s) 186
BccI CCATC 3 cut(s) 906, 1078, 1105
BceAI ACGGC 1 cut(s) 118
BcgI CGANNNNNNTGC 4 cut(s) 126, 160, 380, 414
BcnI CCSGG 1 cut(s) 851
BcoDI GTCTC 1 cut(s) 920
BfaI CTAG 1 cut(s) 1046
BfmI CTRYAG 4 cut(s) 389, 423, 930, 1010
BfoI RGCGCY 1 cut(s) 206
BglII AGATCT 1 cut(s) 91
BisI GCNGC 2 cut(s) 106, 175
BlsI GCNGC 2 cut(s) 107, 176
Bme1390I CCNGG 1 cut(s) 851
Bme18I GGWCC 1 cut(s) 847
BmeRI GACNNNNNGTC 1 cut(s) 790
BmeT110I CYCGRG 1 cut(s) 75
BmgBI CACGTC 1 cut(s) 653
BmgT120I GGNCC 1 cut(s) 847
BmiI GGNNCC 4 cut(s) 722, 848, 849, 871
BmrFI CCNGG 1 cut(s) 851
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 5 cut(s) 390, 820, 874, 959, 1008
BmuI ACTGGG 1 cut(s) 553
BoxI GACNNNNGTC 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 942
BpmI CTGGAG 1 cut(s) 1018
Bpu10I CCTNAGC 1 cut(s) 251
Bpu14I TTCGAA 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 851
Bsa29I ATCGAT 1 cut(s) 126
BsaBI GATNNNNATC 2 cut(s) 122, 768
BsaXI ACNNNNNCTCC 4 cut(s) 900, 930, 998, 1028
Bsc4I CCNNNNNNNGG 2 cut(s) 678, 801
Bse1I ACTGG 5 cut(s) 518, 559, 613, 652, 1001
Bse8I GATNNNNATC 2 cut(s) 122, 768
BseCI ATCGAT 1 cut(s) 126
BseGI GGATG 2 cut(s) 381, 889
BseJI GATNNNNATC 2 cut(s) 122, 768
BseLI CCNNNNNNNGG 2 cut(s) 678, 801
BseNI ACTGG 5 cut(s) 518, 559, 613, 652, 1001
BseX3I CGGCCG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 186
Bsh1236I CGCG 1 cut(s) 45
Bsh1285I CGRYCG 2 cut(s) 106, 130
BshFI GGCC 2 cut(s) 105, 824
BshVI ATCGAT 1 cut(s) 126
BsiEI CGRYCG 2 cut(s) 106, 130
BsiHKAI GWGCWC 2 cut(s) 29, 82
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 851
BslFI GGGAC 2 cut(s) 24, 833
BslI CCNNNNNNNGG 2 cut(s) 678, 801
BsmAI GTCTC 1 cut(s) 920
BsmFI GGGAC 2 cut(s) 24, 833
BsnI GGCC 2 cut(s) 105, 824
BsoBI CYCGRG 1 cut(s) 75
Bsp119I TTCGAA 1 cut(s) 214
Bsp1286I GDGCHC 3 cut(s) 29, 82, 723
Bsp143I GATC 4 cut(s) 91, 127, 343, 769
BspACI CCGC 6 cut(s) 13, 43, 106, 113, 159, 1029
BspANI GGCC 2 cut(s) 105, 824
BspDI ATCGAT 1 cut(s) 126
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 4 cut(s) 722, 848, 849, 871
BspMAI CTGCAG 2 cut(s) 393, 934
BspPI GGATC 1 cut(s) 764
BspT104I TTCGAA 1 cut(s) 214
BsrI ACTGG 5 cut(s) 518, 559, 613, 652, 1001
BssMI GATC 4 cut(s) 91, 127, 343, 769
Bst4CI ACNGT 4 cut(s) 362, 779, 912, 1014
Bst6I CTCTTC 2 cut(s) 216, 525
BstAPI GCANNNNNTGC 2 cut(s) 280, 1058
BstBI TTCGAA 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 1065
BstDEI CTNAG 2 cut(s) 251, 976
BstF5I GGATG 2 cut(s) 381, 889
BstFNI CGCG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 2 cut(s) 205, 1063
BstKTI GATC 4 cut(s) 94, 130, 346, 772
BstMAI GTCTC 1 cut(s) 920
BstMBI GATC 4 cut(s) 91, 127, 343, 769
BstMCI CGRYCG 2 cut(s) 106, 130
BstMWI GCNNNNNNNGC 4 cut(s) 174, 280, 830, 1058
BstNSI RCATGY 2 cut(s) 325, 1067
BstPAI GACNNNNGTC 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 849
BstSFI CTRYAG 4 cut(s) 389, 423, 930, 1010
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 186
BstV2I GAAGAC 1 cut(s) 942
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BstZI CGGCCG 1 cut(s) 103
Bsu15I ATCGAT 1 cut(s) 126
BsuRI GGCC 2 cut(s) 105, 824
BsuTUI ATCGAT 1 cut(s) 126
BtrI CACGTC 1 cut(s) 653
BtsCI GGATG 2 cut(s) 381, 889
BtsI GCAGTG 3 cut(s) 398, 501, 631
BtsIMutI CAGTG 6 cut(s) 398, 501, 631, 645, 917, 994
Cac8I GCNNGC 1 cut(s) 1065
CaiI CAGNNNCTG 1 cut(s) 467
CfoI GCGC 2 cut(s) 205, 1063
Cfr13I GGNCC 1 cut(s) 847
ClaI ATCGAT 1 cut(s) 126
Csp6I GTAC 3 cut(s) 562, 895, 1090
CviAII CATG 6 cut(s) 227, 296, 322, 524, 958, 1064
CviQI GTAC 3 cut(s) 562, 895, 1090
DdeI CTNAG 2 cut(s) 251, 976
DpnI GATC 4 cut(s) 93, 129, 345, 771
DpnII GATC 4 cut(s) 91, 127, 343, 769
DraI TTTAAA 1 cut(s) 738
DriI GACNNNNNGTC 1 cut(s) 790
EaeI YGGCCR 1 cut(s) 103
EagI CGGCCG 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 216, 525
Eam1105I GACNNNNNGTC 1 cut(s) 790
EarI CTCTTC 2 cut(s) 216, 525
Ecl136II GAGCTC 2 cut(s) 27, 80
EclXI CGGCCG 1 cut(s) 103
Eco24I GRGCYC 3 cut(s) 29, 82, 723
Eco32I GATATC 2 cut(s) 313, 659
Eco47I GGWCC 1 cut(s) 847
Eco52I CGGCCG 1 cut(s) 103
Eco53kI GAGCTC 2 cut(s) 27, 80
Eco57I CTGAAG 1 cut(s) 972
Eco88I CYCGRG 1 cut(s) 75
EcoICRI GAGCTC 2 cut(s) 27, 80
EcoO109I RGGNCCY 1 cut(s) 847
EcoRI GAATTC 1 cut(s) 68
EcoRV GATATC 2 cut(s) 313, 659
EcoT22I ATGCAT 1 cut(s) 383
EcoT38I GRGCYC 3 cut(s) 29, 82, 723
FaeI CATG 6 cut(s) 230, 299, 325, 527, 961, 1067
FaqI GGGAC 2 cut(s) 24, 833
FatI CATG 6 cut(s) 226, 295, 321, 523, 957, 1063
FauI CCCGC 1 cut(s) 50
FauNDI CATATG 1 cut(s) 377
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 2 cut(s) 106, 175
FokI GGATG 2 cut(s) 368, 896
FriOI GRGCYC 3 cut(s) 29, 82, 723
Fsp4HI GCNGC 2 cut(s) 106, 175
FspBI CTAG 1 cut(s) 1046
FspI TGCGCA 1 cut(s) 1062
GlaI GCGC 2 cut(s) 204, 1062
GluI GCNGC 2 cut(s) 106, 175
GsuI CTGGAG 1 cut(s) 1018
HaeII RGCGCY 1 cut(s) 206
HaeIII GGCC 2 cut(s) 105, 824
HapII CCGG 1 cut(s) 851
HhaI GCGC 2 cut(s) 205, 1063
Hin1II CATG 6 cut(s) 230, 299, 325, 527, 961, 1067
Hin6I GCGC 2 cut(s) 203, 1061
HinP1I GCGC 2 cut(s) 203, 1061
HinfI GANTC 5 cut(s) 118, 152, 208, 584, 685
HpaII CCGG 1 cut(s) 851
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 358, 795
Hpy188I TCNGA 6 cut(s) 137, 151, 181, 343, 481, 869
Hpy188III TCNNGA 2 cut(s) 18, 662
Hpy8I GTNNAC 2 cut(s) 358, 795
HpyAV CCTTC 6 cut(s) 190, 339, 395, 672, 883, 929
HpyCH4III ACNGT 4 cut(s) 362, 779, 912, 1014
HpyCH4IV ACGT 1 cut(s) 652
HpyF10VI GCNNNNNNNGC 4 cut(s) 174, 280, 830, 1058
HpyF3I CTNAG 2 cut(s) 251, 976
HpySE526I ACGT 1 cut(s) 652
Hsp92II CATG 6 cut(s) 230, 299, 325, 527, 961, 1067
HspAI GCGC 2 cut(s) 203, 1061
KflI GGGWCCC 1 cut(s) 847
Kzo9I GATC 4 cut(s) 91, 127, 343, 769
LmnI GCTCC 5 cut(s) 24, 152, 726, 869, 1006
Lsp1109I GCAGC 1 cut(s) 186
LweI GCATC 5 cut(s) 390, 820, 874, 959, 1008
MaeI CTAG 1 cut(s) 1046
MaeII ACGT 1 cut(s) 652
MaeIII GTNAC 2 cut(s) 620, 960
MalI GATC 4 cut(s) 93, 129, 345, 771
MboI GATC 4 cut(s) 91, 127, 343, 769
MboII GAAGA 5 cut(s) 101, 203, 542, 893, 947
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 3 cut(s) 29, 82, 723
MlyI GAGTC 2 cut(s) 202, 694
MnlI CCTC 6 cut(s) 14, 166, 193, 457, 526, 936
Mph1103I ATGCAT 1 cut(s) 383
MseI TTAA 2 cut(s) 452, 737
MslI CAYNNNNRTG 1 cut(s) 910
MspI CCGG 1 cut(s) 851
MspR9I CCNGG 1 cut(s) 851
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 4 cut(s) 174, 280, 830, 1058
NciI CCSGG 1 cut(s) 851
NdeI CATATG 1 cut(s) 377
NdeII GATC 4 cut(s) 91, 127, 343, 769
NlaIII CATG 6 cut(s) 230, 299, 325, 527, 961, 1067
NlaIV GGNNCC 4 cut(s) 722, 848, 849, 871
NsbI TGCGCA 1 cut(s) 1062
NsiI ATGCAT 1 cut(s) 383
NspI RCATGY 2 cut(s) 325, 1067
NspV TTCGAA 1 cut(s) 214
OliI CACNNNNGTG 1 cut(s) 910
PaeI GCATGC 1 cut(s) 1067
PaeR7I CTCGAG 1 cut(s) 75
PfeI GAWTC 3 cut(s) 118, 152, 584
PfoI TCCNGGA 1 cut(s) 849
PkrI GCNGC 2 cut(s) 107, 176
Ple19I CGATCG 1 cut(s) 130
PleI GAGTC 2 cut(s) 202, 693
PpsI GAGTC 2 cut(s) 202, 693
PpuMI RGGWCCY 1 cut(s) 847
PshAI GACNNNNGTC 1 cut(s) 298
Psp124BI GAGCTC 2 cut(s) 29, 82
Psp5II RGGWCCY 1 cut(s) 847
PspN4I GGNNCC 4 cut(s) 722, 848, 849, 871
PspPI GGNCC 1 cut(s) 847
PspPPI RGGWCCY 1 cut(s) 847
PspXI VCTCGAGB 1 cut(s) 75
PstI CTGCAG 2 cut(s) 393, 934
PstNI CAGNNNCTG 1 cut(s) 467
PsuI RGATCY 1 cut(s) 91
PvuI CGATCG 1 cut(s) 130
RsaI GTAC 3 cut(s) 563, 896, 1091
RsaNI GTAC 3 cut(s) 562, 895, 1090
RseI CAYNNNNRTG 1 cut(s) 910
SacI GAGCTC 2 cut(s) 29, 82
SaqAI TTAA 2 cut(s) 452, 737
SatI GCNGC 2 cut(s) 106, 175
Sau3AI GATC 4 cut(s) 91, 127, 343, 769
Sau96I GGNCC 1 cut(s) 847
SchI GAGTC 2 cut(s) 202, 694
ScrFI CCNGG 1 cut(s) 851
SduI GDGCHC 3 cut(s) 29, 82, 723
SfaNI GCATC 5 cut(s) 390, 820, 874, 959, 1008
SfcI CTRYAG 4 cut(s) 389, 423, 930, 1010
Sfr274I CTCGAG 1 cut(s) 75
SfuI TTCGAA 1 cut(s) 214
SinI GGWCC 1 cut(s) 847
SlaI CTCGAG 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 910
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
SphI GCATGC 1 cut(s) 1067
SsiI CCGC 6 cut(s) 13, 43, 106, 113, 159, 1029
SspMI CTAG 1 cut(s) 1046
SstI GAGCTC 2 cut(s) 29, 82
StyD4I CCNGG 1 cut(s) 849
TaaI ACNGT 4 cut(s) 362, 779, 912, 1014
TaiI ACGT 1 cut(s) 655
TaqI TCGA 4 cut(s) 76, 126, 214, 1082
TatI WGTACW 2 cut(s) 561, 1089
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 3 cut(s) 118, 152, 584
Tru1I TTAA 2 cut(s) 452, 737
Tru9I TTAA 2 cut(s) 452, 737
TscAI CASTG 6 cut(s) 398, 508, 638, 652, 917, 1001
TseI GCWGC 1 cut(s) 174
TspDTI ATGAA 2 cut(s) 512, 1111
TspRI CASTG 6 cut(s) 398, 508, 638, 652, 917, 1001
VpaK11BI GGWCC 1 cut(s) 847
XapI RAATTY 4 cut(s) 68, 836, 1037, 1104
XceI RCATGY 2 cut(s) 325, 1067
XhoI CTCGAG 1 cut(s) 75
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 1 cut(s) 1046
Zsp2I ATGCAT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.