Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009922

Physical Location & Seq

Genomic Coordinates Forward (+)

25133185 .. 25134302

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1184400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGAGGGAAGGCACTCGAGATGGAGCTCACAGCCACGGCCCCGCGATCTGCTAAGAAAAATCAGAGAATTTGCTCTAGCTATGATTGAAGATCTCAGCAATGGACGGTCTCCGGAGATTTTCATCGATCGCTTCAGAAATTACTGCACGAATCCCGATTCAAATTGCTATTGTAGTTTTGATTCACCGAAAGGGCAGGAGATTCTCACGCTTCGAAGAACAAGCCATGTGCGTAGATTAGGGTTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000724 GO:0000725 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

84

Amino Acids

9.84

Weight (kDa)

9.49

Isoelectric Point (pI)

85.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13170 AT3G13170 AT3G13170
fragaria_vesca	FvH4_3g29420
malus_domestica	MD03G1184400.v1.1 MD03G1184700.v1.1
prunus_persica	Prupe.4G241800_v2.0.a1 Prupe.4G241800_v2.0.a1
pyrus_communis	pycom03g13780
rosa_chinensis	RchiOBHm_Chr5g0053841
rosa_laevigata	RLG00000034906
rosa_multiflora	Rmu_sc0007356.1_g000010
rosa_roxburghii	Rroxscaffold_1G00026760
rosa_rugosa	Rorug05G0283600 Rorug05G0283700
rosa_samantha	Rh5AG353400 Rh5BG365000 Rh5CG390100 Rh5DG380000
rosa_wichuraiana	Rw0G002140 Rw0G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	45
AccIII	TCCGGA	1 cut(s)	112
AciI	CCGC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	89, 162
AluBI	AGCT	2 cut(s)	27, 80
AluI	AGCT	2 cut(s)	27, 80
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	114
Ama87I	CYCGRG	1 cut(s)	16
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	177
AsuII	TTCGAA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BccI	CCATC	1 cut(s)	15
BceAI	ACGGC	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	77
BglII	AGATCT	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	214
Bsa29I	ATCGAT	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	35
BsaWI	WCCGGW	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	106
Bse8I	GATNNNNATC	1 cut(s)	122
BseAI	TCCGGA	1 cut(s)	112
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	35
BseJI	GATNNNNATC	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	109
BsgI	GTGCAG	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	40
BshVI	ATCGAT	1 cut(s)	126
BsiEI	CGRYCG	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	40
Bso31I	GGTCTC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	16
Bsp119I	TTCGAA	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp13I	TCCGGA	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	46, 91, 127
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	108
BspDI	ATCGAT	1 cut(s)	126
BspEI	TCCGGA	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	41
BspT104I	TTCGAA	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	3 cut(s)	46, 91, 127
Bst4CI	ACNGT	1 cut(s)	108
BstBI	TTCGAA	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	53, 95
BstDSI	CCRYGG	1 cut(s)	35
BstFNI	CGCG	1 cut(s)	45
BstKTI	GATC	3 cut(s)	49, 94, 130
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	3 cut(s)	46, 91, 127
BstMCI	CGRYCG	1 cut(s)	130
BstUI	CGCG	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	40
BsuTUI	ATCGAT	1 cut(s)	126
BtgI	CCRYGG	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	39
ClaI	ATCGAT	1 cut(s)	126
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	5 cut(s)	27, 34, 40, 80, 225
CviKI_1	RGCY	5 cut(s)	27, 34, 40, 80, 225
DdeI	CTNAG	2 cut(s)	53, 95
DpnI	GATC	3 cut(s)	48, 93, 129
DpnII	GATC	3 cut(s)	46, 91, 127
Ecl136II	GAGCTC	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	118
Eco88I	CYCGRG	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	1 cut(s)	230
FaiI	YATR	2 cut(s)	83, 228
FatI	CATG	1 cut(s)	226
FauI	CCCGC	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	1 cut(s)	230
HinfI	GANTC	4 cut(s)	151, 158, 182, 202
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	177
Hpy188I	TCNGA	2 cut(s)	65, 137
Hpy188III	TCNNGA	3 cut(s)	18, 113, 155
HpyAV	CCTTC	1 cut(s)	3
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	147
HpyF3I	CTNAG	2 cut(s)	53, 95
Hsp92II	CATG	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	46, 91, 127
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	2 cut(s)	126, 182
MaeI	CTAG	1 cut(s)	77
MalI	GATC	3 cut(s)	48, 93, 129
MboI	GATC	3 cut(s)	46, 91, 127
MboII	GAAGA	2 cut(s)	101, 228
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	3 cut(s)	68, 139, 163
MroI	TCCGGA	1 cut(s)	112
MspI	CCGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	45
NdeII	GATC	3 cut(s)	46, 91, 127
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	1 cut(s)	41
NspV	TTCGAA	1 cut(s)	214
PaeR7I	CTCGAG	1 cut(s)	16
PfeI	GAWTC	4 cut(s)	151, 158, 182, 202
Ple19I	CGATCG	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	91
PvuI	CGATCG	1 cut(s)	130
SacI	GAGCTC	1 cut(s)	29
Sau3AI	GATC	3 cut(s)	46, 91, 127
Sau96I	GGNCC	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	2 cut(s)	29, 82
Sfr274I	CTCGAG	1 cut(s)	16
SfuI	TTCGAA	1 cut(s)	214
SlaI	CTCGAG	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	3 cut(s)	68, 139, 163
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	1 cut(s)	77
SstI	GAGCTC	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	108
TaqI	TCGA	3 cut(s)	17, 126, 214
TasI	AATT	3 cut(s)	68, 139, 163
TfiI	GAWTC	4 cut(s)	151, 158, 182, 202
TspDTI	ATGAA	1 cut(s)	112
XapI	RAATTY	1 cut(s)	68
XhoI	CTCGAG	1 cut(s)	16
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.