Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009922

Physical Location & Seq

Genomic Coordinates Reverse (-)

15967425 .. 15971164

Gene Structure 3740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G241800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAGGGAAAGCACTCAAGATGGAGCTCACAGCCTCGGCCTTGCGATTTGCTAAGAAAAATCAGAGAATTAACTCGAGCTATAGTTGAAGATCTCAGCAATGGACGGTCTCCGGAGATTCTCATCGATCGCTTCAGAAATTACTGCACGAAGCCCGATTCGAATTGCTATTGTAGCTCTGATTTGCCAATTTTGAAGGAGACTCTCACACTTCGAAGGGAAAGCCATTTGCGTAGATTGGATGTTTTGTTTAGGGTTCTAGTAATTGTTCAGCAACTTCTGCAAGAAAACAGACACGGGTCTAAGAGAGATATCTATTACATGCACCCTTCTGTATTTTCAGATCAGTCAATTGTAGACCGTGCGATCAATGACATATGCATCCTTATGCAGTGTAGTCGCCACAATCTGAACGTGGTGTCTGTAGGAAAAGGTTTGGTAATGGGCTGGTTAAGGTTCTCAGAAGCTGGAAACATGTTTGATTGCATAAATAGGCCAAACACTGCCTTTCCTGTTCCCATTCATGTTGAAGAGGTCAAAGATATTGTTAGTGTAGCGAAATACATACTTGTTGTGGAGAAAGAATCAGTTTTTCAACGATTGGCAAATGACCAGTTCTGCAAAACAAACCACTGCATCGTTATCACTGGACGTGGATATCCTGATATTTCCACAAGAAGGTTTTTGGGGCTTCTTGTTGATACTTTGCATCTCCCTACCTATTGCTTGGTAGACTGTGATCCGTACGGTTTTGACATCCTGTCCACATATCGGTTTGGTTCTATGCAACTGGCCTACGATGCAAAATTTCTACGGGTCCCTGAGATACTCTGGCTTGGAGGCTTCCTTTTGGACTCGGAGAAGTACCAACTTCCACAACAGTGTCTCCTTCCCTTGACAGCACAAGACAAGAGGAAAACAGAAGCCATGTTACGTAGATGCTACTTACAAAGAGAAGCGCCAGAGTGGAGATTGGAACTACAATTGATGCTGGAAAGAGGAGTGAAATTTGAGTTAGAAGCGTTGTCTGTGCATGAACTTAACTTTTTGTCGGCGGTGTACATACCATCCAAAATTCAAGGTGGAGTCTACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000724 GO:0000725 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

366

Amino Acids

42.31

Weight (kDa)

8.36

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13170 AT3G13170 AT3G13170
fragaria_vesca	FvH4_3g29420
malus_domestica	MD03G1184400.v1.1 MD03G1184700.v1.1
prunus_persica	Prupe.4G241800_v2.0.a1 Prupe.4G241800_v2.0.a1
pyrus_communis	pycom03g13780
rosa_chinensis	RchiOBHm_Chr5g0053841
rosa_laevigata	RLG00000034906
rosa_multiflora	Rmu_sc0007356.1_g000010
rosa_roxburghii	Rroxscaffold_1G00026760
rosa_rugosa	Rorug05G0283600 Rorug05G0283700
rosa_samantha	Rh5AG353400 Rh5BG365000 Rh5CG390100 Rh5DG380000
rosa_wichuraiana	Rw0G002140 Rw0G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	357, 732, 1089
AccIII	TCCGGA	1 cut(s)	112
AciI	CCGC	1 cut(s)	1055
AclWI	GGATC	1 cut(s)	734
AcsI	RAATTY	3 cut(s)	806, 1007, 1074
AcuI	CTGAAG	1 cut(s)	118
AfaI	GTAC	3 cut(s)	746, 866, 1061
AfiI	CCNNNNNNNGG	2 cut(s)	678, 771
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	5 cut(s)	89, 196, 530, 596, 1079
AhdI	GACNNNNNGTC	1 cut(s)	760
AjiI	CACGTC	1 cut(s)	653
AleI	CACNNNNGTG	1 cut(s)	880
AluBI	AGCT	4 cut(s)	27, 80, 177, 467
AluI	AGCT	4 cut(s)	27, 80, 177, 467
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	3 cut(s)	114, 194, 890
AlwI	GGATC	1 cut(s)	734
AlwNI	CAGNNNCTG	1 cut(s)	467
Ama87I	CYCGRG	1 cut(s)	75
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	3 cut(s)	38, 494, 792
ApoI	RAATTY	3 cut(s)	806, 1007, 1074
AspLEI	GCGC	1 cut(s)	961
AspS9I	GGNCC	1 cut(s)	817
AsuII	TTCGAA	2 cut(s)	161, 214
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	817
BanII	GRGCYC	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	915, 947
Bbv12I	GWGCWC	1 cut(s)	29
BccI	CCATC	2 cut(s)	15, 1075
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BcoDI	GTCTC	3 cut(s)	114, 194, 890
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	2 cut(s)	81, 423
BfoI	RGCGCY	1 cut(s)	962
BglII	AGATCT	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	817
BmeRI	GACNNNNNGTC	1 cut(s)	760
BmeT110I	CYCGRG	1 cut(s)	75
BmgBI	CACGTC	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	817
BmiI	GGNNCC	2 cut(s)	818, 819
BmsI	GCATC	6 cut(s)	390, 645, 718, 790, 929, 978
BoxI	GACNNNNGTC	1 cut(s)	298
Bpu14I	TTCGAA	2 cut(s)	161, 214
Bsa29I	ATCGAT	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	935
BsaBI	GATNNNNATC	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	35
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	870, 900
Bsc4I	CCNNNNNNNGG	2 cut(s)	678, 771
Bse1I	ACTGG	3 cut(s)	613, 652, 795
Bse3DI	GCAATG	1 cut(s)	106
Bse8I	GATNNNNATC	1 cut(s)	122
BseAI	TCCGGA	1 cut(s)	112
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	4 cut(s)	247, 381, 756, 1067
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	678, 771
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	3 cut(s)	109, 474, 813
BseNI	ACTGG	3 cut(s)	613, 652, 795
BseRI	GAGGAG	1 cut(s)	1014
BsgI	GTGCAG	1 cut(s)	130
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	3 cut(s)	40, 496, 794
BshVI	ATCGAT	1 cut(s)	126
BsiEI	CGRYCG	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	113
BsiWI	CGTACG	1 cut(s)	744
BslFI	GGGAC	1 cut(s)	803
BslI	CCNNNNNNNGG	2 cut(s)	678, 771
BsmAI	GTCTC	3 cut(s)	114, 194, 890
BsmFI	GGGAC	1 cut(s)	803
BsnI	GGCC	3 cut(s)	40, 496, 794
Bso31I	GGTCTC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	75
Bsp119I	TTCGAA	2 cut(s)	161, 214
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp13I	TCCGGA	1 cut(s)	112
Bsp1407I	TGTACA	1 cut(s)	1059
Bsp143I	GATC	5 cut(s)	91, 127, 343, 366, 739
BspACI	CCGC	1 cut(s)	1055
BspANI	GGCC	3 cut(s)	40, 496, 794
BspCNI	CTCAG	3 cut(s)	108, 473, 814
BspDI	ATCGAT	1 cut(s)	126
BspEI	TCCGGA	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	818, 819
BspPI	GGATC	1 cut(s)	734
BspT104I	TTCGAA	2 cut(s)	161, 214
BspTNI	GGTCTC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	106
BsrGI	TGTACA	1 cut(s)	1059
BsrI	ACTGG	3 cut(s)	613, 652, 795
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	5 cut(s)	91, 127, 343, 366, 739
Bst4CI	ACNGT	5 cut(s)	108, 362, 737, 749, 882
Bst6I	CTCTTC	1 cut(s)	525
BstAPI	GCANNNNNTGC	1 cut(s)	280
BstAUI	TGTACA	1 cut(s)	1059
BstBAI	YACGTR	1 cut(s)	935
BstBI	TTCGAA	2 cut(s)	161, 214
BstDEI	CTNAG	5 cut(s)	53, 95, 303, 460, 822
BstF5I	GGATG	4 cut(s)	247, 381, 756, 1067
BstH2I	RGCGCY	1 cut(s)	962
BstHHI	GCGC	1 cut(s)	961
BstKTI	GATC	5 cut(s)	94, 130, 346, 369, 742
BstMAI	GTCTC	3 cut(s)	114, 194, 890
BstMBI	GATC	5 cut(s)	91, 127, 343, 366, 739
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 280, 800
BstNSI	RCATGY	2 cut(s)	325, 478
BstPAI	GACNNNNGTC	1 cut(s)	298
BstSFI	CTRYAG	2 cut(s)	81, 423
BstSNI	TACGTA	1 cut(s)	935
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	40, 496, 794
BsuTUI	ATCGAT	1 cut(s)	126
BtrI	CACGTC	1 cut(s)	653
BtsCI	GGATG	4 cut(s)	247, 381, 756, 1067
BtsI	GCAGTG	3 cut(s)	398, 501, 631
BtsIMutI	CAGTG	5 cut(s)	398, 501, 631, 645, 887
CaiI	CAGNNNCTG	1 cut(s)	467
CfoI	GCGC	1 cut(s)	961
Cfr13I	GGNCC	1 cut(s)	817
ClaI	ATCGAT	1 cut(s)	126
Csp6I	GTAC	3 cut(s)	745, 865, 1060
CviAII	CATG	5 cut(s)	322, 475, 524, 928, 1034
CviQI	GTAC	3 cut(s)	745, 865, 1060
DdeI	CTNAG	5 cut(s)	53, 95, 303, 460, 822
DpnI	GATC	5 cut(s)	93, 129, 345, 368, 741
DpnII	GATC	5 cut(s)	91, 127, 343, 366, 739
DriI	GACNNNNNGTC	1 cut(s)	760
Eam1104I	CTCTTC	1 cut(s)	525
Eam1105I	GACNNNNNGTC	1 cut(s)	760
EarI	CTCTTC	1 cut(s)	525
Ecl136II	GAGCTC	1 cut(s)	27
Eco105I	TACGTA	1 cut(s)	935
Eco24I	GRGCYC	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	114
Eco32I	GATATC	2 cut(s)	313, 659
Eco47I	GGWCC	1 cut(s)	817
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	118
Eco88I	CYCGRG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	817
EcoRV	GATATC	2 cut(s)	313, 659
EcoT22I	ATGCAT	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	5 cut(s)	325, 478, 527, 931, 1037
FaqI	GGGAC	1 cut(s)	803
FatI	CATG	5 cut(s)	321, 474, 523, 927, 1033
FauNDI	CATATG	1 cut(s)	377
FblI	GTMKAC	3 cut(s)	357, 732, 1089
FokI	GGATG	4 cut(s)	254, 368, 743, 1054
FriOI	GRGCYC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	960
HaeII	RGCGCY	1 cut(s)	962
HaeIII	GGCC	3 cut(s)	40, 496, 794
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	1 cut(s)	961
Hin1II	CATG	5 cut(s)	325, 478, 527, 931, 1037
Hin6I	GCGC	1 cut(s)	959
HinP1I	GCGC	1 cut(s)	959
HinfI	GANTC	6 cut(s)	118, 158, 202, 584, 854, 1086
HpaII	CCGG	1 cut(s)	113
Hpy166II	GTNNAC	5 cut(s)	358, 733, 765, 1060, 1090
Hpy188I	TCNGA	7 cut(s)	65, 137, 181, 343, 411, 463, 859
Hpy188III	TCNNGA	3 cut(s)	18, 113, 662
Hpy8I	GTNNAC	5 cut(s)	358, 733, 765, 1060, 1090
HpyAV	CCTTC	5 cut(s)	190, 210, 339, 672, 899
HpyCH4III	ACNGT	5 cut(s)	108, 362, 737, 749, 882
HpyCH4IV	ACGT	3 cut(s)	414, 652, 934
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 280, 800
HpyF3I	CTNAG	5 cut(s)	53, 95, 303, 460, 822
HpySE526I	ACGT	3 cut(s)	414, 652, 934
Hsp92II	CATG	5 cut(s)	325, 478, 527, 931, 1037
HspAI	GCGC	1 cut(s)	959
KflI	GGGWCCC	1 cut(s)	817
Kpn2I	TCCGGA	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	91, 127, 343, 366, 739
LmnI	GCTCC	1 cut(s)	24
LweI	GCATC	6 cut(s)	390, 645, 718, 790, 929, 978
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	3 cut(s)	414, 652, 934
MaeIII	GTNAC	1 cut(s)	930
MalI	GATC	5 cut(s)	93, 129, 345, 368, 741
MboI	GATC	5 cut(s)	91, 127, 343, 366, 739
MboII	GAAGA	2 cut(s)	101, 542
MfeI	CAATTG	2 cut(s)	351, 983
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	29
MlyI	GAGTC	3 cut(s)	196, 848, 1095
MnlI	CCTC	5 cut(s)	45, 526, 833, 906, 992
Mph1103I	ATGCAT	1 cut(s)	383
MroI	TCCGGA	1 cut(s)	112
MseI	TTAA	3 cut(s)	71, 452, 1041
MslI	CAYNNNNRTG	2 cut(s)	386, 880
MspI	CCGG	1 cut(s)	113
MunI	CAATTG	2 cut(s)	351, 983
MwoI	GCNNNNNNNGC	3 cut(s)	174, 280, 800
NdeI	CATATG	1 cut(s)	377
NdeII	GATC	5 cut(s)	91, 127, 343, 366, 739
NlaIII	CATG	5 cut(s)	325, 478, 527, 931, 1037
NlaIV	GGNNCC	2 cut(s)	818, 819
NmeAIII	GCCGAG	1 cut(s)	16
NsiI	ATGCAT	1 cut(s)	383
NspI	RCATGY	2 cut(s)	325, 478
NspV	TTCGAA	2 cut(s)	161, 214
OliI	CACNNNNGTG	1 cut(s)	880
PaeR7I	CTCGAG	1 cut(s)	75
PciI	ACATGT	1 cut(s)	474
PfeI	GAWTC	3 cut(s)	118, 158, 584
Pfl23II	CGTACG	1 cut(s)	744
Ple19I	CGATCG	1 cut(s)	130
PleI	GAGTC	3 cut(s)	196, 848, 1094
PpsI	GAGTC	3 cut(s)	196, 848, 1094
Ppu21I	YACGTR	1 cut(s)	935
PpuMI	RGGWCCY	1 cut(s)	817
PscI	ACATGT	1 cut(s)	474
PshAI	GACNNNNGTC	1 cut(s)	298
Psp124BI	GAGCTC	1 cut(s)	29
Psp5II	RGGWCCY	1 cut(s)	817
PspLI	CGTACG	1 cut(s)	744
PspN4I	GGNNCC	2 cut(s)	818, 819
PspPI	GGNCC	1 cut(s)	817
PspPPI	RGGWCCY	1 cut(s)	817
PspXI	VCTCGAGB	1 cut(s)	75
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	91
PvuI	CGATCG	1 cut(s)	130
RsaI	GTAC	3 cut(s)	746, 866, 1061
RsaNI	GTAC	3 cut(s)	745, 865, 1060
RseI	CAYNNNNRTG	2 cut(s)	386, 880
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	71, 452, 1041
Sau3AI	GATC	5 cut(s)	91, 127, 343, 366, 739
Sau96I	GGNCC	1 cut(s)	817
SchI	GAGTC	3 cut(s)	196, 848, 1095
SduI	GDGCHC	1 cut(s)	29
SfaNI	GCATC	6 cut(s)	390, 645, 718, 790, 929, 978
SfcI	CTRYAG	2 cut(s)	81, 423
Sfr274I	CTCGAG	1 cut(s)	75
SfuI	TTCGAA	2 cut(s)	161, 214
SinI	GGWCC	1 cut(s)	817
SlaI	CTCGAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	2 cut(s)	386, 880
SmlI	CTYRAG	2 cut(s)	16, 75
SmoI	CTYRAG	2 cut(s)	16, 75
SnaBI	TACGTA	1 cut(s)	935
SsiI	CCGC	1 cut(s)	1055
SspMI	CTAG	1 cut(s)	260
SstI	GAGCTC	1 cut(s)	29
TaaI	ACNGT	5 cut(s)	108, 362, 737, 749, 882
TaiI	ACGT	3 cut(s)	417, 655, 937
TaqI	TCGA	4 cut(s)	76, 126, 161, 214
TatI	WGTACW	1 cut(s)	1059
TfiI	GAWTC	3 cut(s)	118, 158, 584
Tru1I	TTAA	3 cut(s)	71, 452, 1041
Tru9I	TTAA	3 cut(s)	71, 452, 1041
TscAI	CASTG	5 cut(s)	398, 508, 638, 652, 887
TspDTI	ATGAA	2 cut(s)	512, 1050
TspGWI	ACGGA	1 cut(s)	732
TspRI	CASTG	5 cut(s)	398, 508, 638, 652, 887
VpaK11BI	GGWCC	1 cut(s)	817
XapI	RAATTY	3 cut(s)	806, 1007, 1074
XceI	RCATGY	2 cut(s)	325, 478
XhoI	CTCGAG	1 cut(s)	75
XmiI	GTMKAC	3 cut(s)	357, 732, 1089
XspI	CTAG	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.