Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009922

Physical Location & Seq

Genomic Coordinates Forward (+)

14868885 .. 14872182

Gene Structure 3298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13780.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTCCAGCAATCCATTATTTTCGAAAACTTCAATTGCGCAAGACGCAAGCATTATGGAGGGAAGGCACTCGAGATGGAACTCACAGCCACGGCCCCGCGATCTGCTAAGAAAAATCAGAGAATTTACTCGAGCTATGGTTGAAGATCTCAGCAATGGACGGTCTCCGGAGATTTTCATCGATCGCTTCAGAAATTACTGCACGAATCCCGATTCAAATTGTTTTGATTCACCGAAAGGGCAGGAGATTCTCACGCTTCGAAGGACAAGCCATGTGCGTAGATTAGATGTTTTTCTCCGCGTTTTGTTGATTGTTCAGCAACTTCTGCAAGAAAACAAACATGGGTCTAAGAGGGATGTCTATTACATGCATCCTTCTATATTTTCAGATCAGTCAGTAGTAGACCGTGCAATCAATGACATATGCATCCTTCTGCATTGTAGTCGCCACAATTTGAATGTCGTGTCTGTAGGAAAGGGGTTGGTAATGGGCTGGTTAAGGTTCTCAGAAGCTGGAAACGTATTTGATTGCATAAATAGGCCAAACACAGCCTTCCCTGTCCCTATTCATGTTGAAGAGGTTAAAGACATTGTCAGCGTAGCTCGGTACATACTTGTTGTGGAGAAAGAATCAGTTTTTCAACGATTGGCAAATGACCAGTTTTGCAACAAAAACCATTGCATCGTTACCACTGGGCGTGGCTATCCTGATATTCCCACAAGAAGGTTTTTGGGGCTCCTTGTTGATACCCTGCATCTCCCTATCTATTGCTTGGTAGATTGTGATCCGTACGGTTTTGACATCCTCTCGATATATCGGTTTGGTTCTATGCAAATGGCCTATGATGCAAAATTTCTACGCGTCCCCGAGGTACTCTGGCTTGGAGCCTTCCCTTCGGACTCAGACAAGTACGGTCTTCCACAACAGTGTCTCCTTCCTTTGACGGTAGAAGACAAGAGGAAAACGGAGGCCATGCTACTTCGATGCTACTTACAGAGAGAAGCGCCGCCACACTGGAGATTGGAGCTACAGTTGATGCTGGAAAGAGGAGTGAAGTTTGAGTTAGAAGCGTTGTCTGTGCACAAACTTAACTATTTGTCGGAGGTGTACATACCATCTAAACTTCAAGGTGGAGTCCACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000724 GO:0000725 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

382

Amino Acids

44.0

Weight (kDa)

8.57

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13170 AT3G13170 AT3G13170
fragaria_vesca	FvH4_3g29420
malus_domestica	MD03G1184400.v1.1 MD03G1184700.v1.1
prunus_persica	Prupe.4G241800_v2.0.a1 Prupe.4G241800_v2.0.a1
pyrus_communis	pycom03g13780
rosa_chinensis	RchiOBHm_Chr5g0053841
rosa_laevigata	RLG00000034906
rosa_multiflora	Rmu_sc0007356.1_g000010
rosa_roxburghii	Rroxscaffold_1G00026760
rosa_rugosa	Rorug05G0283600 Rorug05G0283700
rosa_samantha	Rh5AG353400 Rh5BG365000 Rh5CG390100 Rh5DG380000
rosa_wichuraiana	Rw0G002140 Rw0G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	3 cut(s)	99, 300, 861
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	3 cut(s)	97, 298, 1007
AclWI	GGATC	1 cut(s)	779
AcsI	RAATTY	2 cut(s)	122, 851
AcuI	CTGAAG	1 cut(s)	172
AfaI	GTAC	5 cut(s)	608, 791, 873, 911, 1109
AfiI	CCNNNNNNNGG	1 cut(s)	723
AflIII	ACRYGT	1 cut(s)	859
AgsI	TTSAA	7 cut(s)	33, 143, 216, 457, 575, 641, 1127
AleI	CACNNNNGTG	1 cut(s)	925
AluBI	AGCT	4 cut(s)	134, 512, 602, 1027
AluI	AGCT	4 cut(s)	134, 512, 602, 1027
Alw21I	GWGCWC	1 cut(s)	1083
Alw26I	GTCTC	2 cut(s)	168, 935
Alw44I	GTGCAC	1 cut(s)	1079
AlwI	GGATC	1 cut(s)	779
AlwNI	CAGNNNCTG	1 cut(s)	512
Ama87I	CYCGRG	3 cut(s)	70, 129, 866
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	4 cut(s)	92, 539, 837, 969
ApaLI	GTGCAC	1 cut(s)	1079
ApoI	RAATTY	2 cut(s)	122, 851
AspLEI	GCGC	2 cut(s)	40, 1006
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	222
AsuII	TTCGAA	2 cut(s)	23, 259
AvaI	CYCGRG	3 cut(s)	70, 129, 866
BaeGI	GKGCMC	1 cut(s)	1083
BanII	GRGCYC	1 cut(s)	738
BbsI	GAAGAC	2 cut(s)	908, 957
Bbv12I	GWGCWC	1 cut(s)	1083
BccI	CCATC	2 cut(s)	69, 1123
BceAI	ACGGC	1 cut(s)	107
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BcoDI	GTCTC	2 cut(s)	168, 935
BfmI	CTRYAG	2 cut(s)	468, 1028
BfoI	RGCGCY	1 cut(s)	1007
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	1 cut(s)	1007
BlsI	GCNGC	1 cut(s)	1008
BmeT110I	CYCGRG	3 cut(s)	70, 129, 866
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	3 cut(s)	95, 737, 886
BmrI	ACTGGG	1 cut(s)	702
BmsI	GCATC	7 cut(s)	379, 435, 690, 763, 835, 974, 1026
BmuI	ACTGGG	1 cut(s)	702
BpiI	GAAGAC	2 cut(s)	908, 957
BpmI	CTGGAG	1 cut(s)	1036
Bpu14I	TTCGAA	2 cut(s)	23, 259
Bsa29I	ATCGAT	1 cut(s)	180
BsaBI	GATNNNNATC	2 cut(s)	176, 783
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	89, 867
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	4 cut(s)	915, 945, 1016, 1046
Bsc4I	CCNNNNNNNGG	1 cut(s)	723
Bse1I	ACTGG	3 cut(s)	658, 697, 1019
Bse3DI	GCAATG	2 cut(s)	160, 676
Bse8I	GATNNNNATC	2 cut(s)	176, 783
BseAI	TCCGGA	1 cut(s)	166
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	89, 867
BseGI	GGATG	4 cut(s)	361, 370, 426, 801
BseJI	GATNNNNATC	2 cut(s)	176, 783
BseLI	CCNNNNNNNGG	1 cut(s)	723
BseMI	GCAATG	2 cut(s)	160, 676
BseMII	CTCAG	3 cut(s)	163, 519, 915
BseNI	ACTGG	3 cut(s)	658, 697, 1019
BseRI	GAGGAG	1 cut(s)	1062
BseSI	GKGCMC	1 cut(s)	1083
BsgI	GTGCAG	1 cut(s)	184
Bsh1236I	CGCG	3 cut(s)	99, 300, 861
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	4 cut(s)	94, 541, 839, 971
BshVI	ATCGAT	1 cut(s)	180
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	1083
BsiHKCI	CYCGRG	3 cut(s)	70, 129, 866
BsiSI	CCGG	1 cut(s)	167
BsiWI	CGTACG	1 cut(s)	789
BslFI	GGGAC	2 cut(s)	545, 848
BslI	CCNNNNNNNGG	1 cut(s)	723
BsmAI	GTCTC	2 cut(s)	168, 935
BsmFI	GGGAC	2 cut(s)	545, 848
BsnI	GGCC	4 cut(s)	94, 541, 839, 971
Bso31I	GGTCTC	1 cut(s)	168
BsoBI	CYCGRG	3 cut(s)	70, 129, 866
Bsp119I	TTCGAA	2 cut(s)	23, 259
Bsp1286I	GDGCHC	2 cut(s)	738, 1083
Bsp13I	TCCGGA	1 cut(s)	166
Bsp1407I	TGTACA	1 cut(s)	1107
Bsp143I	GATC	5 cut(s)	100, 145, 181, 388, 784
BspACI	CCGC	3 cut(s)	97, 298, 1007
BspANI	GGCC	4 cut(s)	94, 541, 839, 971
BspCNI	CTCAG	3 cut(s)	162, 518, 914
BspDI	ATCGAT	1 cut(s)	180
BspEI	TCCGGA	1 cut(s)	166
BspFNI	CGCG	3 cut(s)	99, 300, 861
BspLI	GGNNCC	3 cut(s)	95, 737, 886
BspPI	GGATC	1 cut(s)	779
BspT104I	TTCGAA	2 cut(s)	23, 259
BspTNI	GGTCTC	1 cut(s)	168
BsrDI	GCAATG	2 cut(s)	160, 676
BsrGI	TGTACA	1 cut(s)	1107
BsrI	ACTGG	3 cut(s)	658, 697, 1019
BssECI	CCNNGG	2 cut(s)	89, 867
BssMI	GATC	5 cut(s)	100, 145, 181, 388, 784
Bst4CI	ACNGT	7 cut(s)	162, 407, 794, 914, 927, 946, 1032
Bst6I	CTCTTC	1 cut(s)	570
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstAUI	TGTACA	1 cut(s)	1107
BstBI	TTCGAA	2 cut(s)	23, 259
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	5 cut(s)	107, 149, 348, 505, 901
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	4 cut(s)	361, 370, 426, 801
BstFNI	CGCG	3 cut(s)	99, 300, 861
BstH2I	RGCGCY	1 cut(s)	1007
BstHHI	GCGC	2 cut(s)	40, 1006
BstKTI	GATC	5 cut(s)	103, 148, 184, 391, 787
BstMAI	GTCTC	2 cut(s)	168, 935
BstMBI	GATC	5 cut(s)	100, 145, 181, 388, 784
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 325, 845
BstNSI	RCATGY	1 cut(s)	370
BstSFI	CTRYAG	2 cut(s)	468, 1028
BstSLI	GKGCMC	1 cut(s)	1083
BstUI	CGCG	3 cut(s)	99, 300, 861
BstV2I	GAAGAC	2 cut(s)	908, 957
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	4 cut(s)	94, 541, 839, 971
BsuTUI	ATCGAT	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	4 cut(s)	361, 370, 426, 801
BtsIMutI	CAGTG	3 cut(s)	690, 932, 1012
Cac8I	GCNNGC	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	512
CfoI	GCGC	2 cut(s)	40, 1006
Cfr13I	GGNCC	1 cut(s)	93
ClaI	ATCGAT	1 cut(s)	180
CseI	GACGC	2 cut(s)	53, 850
Csp6I	GTAC	5 cut(s)	607, 790, 872, 910, 1108
CviAII	CATG	5 cut(s)	272, 341, 367, 569, 973
CviQI	GTAC	5 cut(s)	607, 790, 872, 910, 1108
DdeI	CTNAG	5 cut(s)	107, 149, 348, 505, 901
DpnI	GATC	5 cut(s)	102, 147, 183, 390, 786
DpnII	GATC	5 cut(s)	100, 145, 181, 388, 784
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco24I	GRGCYC	1 cut(s)	738
Eco31I	GGTCTC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	172
Eco88I	CYCGRG	3 cut(s)	70, 129, 866
EcoT22I	ATGCAT	2 cut(s)	372, 428
EcoT38I	GRGCYC	1 cut(s)	738
FaeI	CATG	5 cut(s)	275, 344, 370, 572, 976
FaqI	GGGAC	2 cut(s)	545, 848
FatI	CATG	5 cut(s)	271, 340, 366, 568, 972
FauI	CCCGC	1 cut(s)	104
FauNDI	CATATG	1 cut(s)	422
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	1 cut(s)	1007
FokI	GGATG	4 cut(s)	357, 368, 413, 788
FriOI	GRGCYC	1 cut(s)	738
Fsp4HI	GCNGC	1 cut(s)	1007
FspI	TGCGCA	1 cut(s)	39
GlaI	GCGC	2 cut(s)	39, 1005
GluI	GCNGC	1 cut(s)	1007
GsuI	CTGGAG	1 cut(s)	1036
HaeII	RGCGCY	1 cut(s)	1007
HaeIII	GGCC	4 cut(s)	94, 541, 839, 971
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	2 cut(s)	53, 850
HhaI	GCGC	2 cut(s)	40, 1006
Hin1II	CATG	5 cut(s)	275, 344, 370, 572, 976
Hin6I	GCGC	2 cut(s)	38, 1004
HinP1I	GCGC	2 cut(s)	38, 1004
HinfI	GANTC	7 cut(s)	205, 212, 227, 247, 629, 899, 1134
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	222
Hpy166II	GTNNAC	4 cut(s)	403, 1081, 1108, 1138
Hpy188I	TCNGA	7 cut(s)	119, 191, 388, 508, 898, 904, 1102
Hpy188III	TCNNGA	5 cut(s)	72, 167, 209, 707, 808
Hpy8I	GTNNAC	4 cut(s)	403, 1081, 1108, 1138
HpyAV	CCTTC	9 cut(s)	57, 255, 384, 440, 562, 717, 898, 903, 944
HpyCH4III	ACNGT	7 cut(s)	162, 407, 794, 914, 927, 946, 1032
HpyCH4IV	ACGT	1 cut(s)	519
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 325, 845
HpyF3I	CTNAG	5 cut(s)	107, 149, 348, 505, 901
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	5 cut(s)	275, 344, 370, 572, 976
HspAI	GCGC	2 cut(s)	38, 1004
Kpn2I	TCCGGA	1 cut(s)	166
Kzo9I	GATC	5 cut(s)	100, 145, 181, 388, 784
LmnI	GCTCC	3 cut(s)	741, 884, 1024
LweI	GCATC	7 cut(s)	379, 435, 690, 763, 835, 974, 1026
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	5 cut(s)	102, 147, 183, 390, 786
MboI	GATC	5 cut(s)	100, 145, 181, 388, 784
MboII	GAAGA	4 cut(s)	155, 587, 908, 962
MfeI	CAATTG	1 cut(s)	33
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	2 cut(s)	738, 1083
MluCI	AATT	6 cut(s)	33, 122, 193, 217, 451, 851
MluI	ACGCGT	1 cut(s)	859
MlyI	GAGTC	2 cut(s)	893, 1143
MmeI	TCCRAC	1 cut(s)	1080
MnlI	CCTC	9 cut(s)	52, 345, 571, 815, 862, 951, 961, 1040, 1096
Mph1103I	ATGCAT	2 cut(s)	372, 428
MroI	TCCGGA	1 cut(s)	166
MseI	TTAA	3 cut(s)	497, 582, 1089
MslI	CAYNNNNRTG	1 cut(s)	925
MspI	CCGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	33
MvnI	CGCG	3 cut(s)	99, 300, 861
MwoI	GCNNNNNNNGC	3 cut(s)	44, 325, 845
NdeI	CATATG	1 cut(s)	422
NdeII	GATC	5 cut(s)	100, 145, 181, 388, 784
NlaIII	CATG	5 cut(s)	275, 344, 370, 572, 976
NlaIV	GGNNCC	3 cut(s)	95, 737, 886
NsbI	TGCGCA	1 cut(s)	39
NsiI	ATGCAT	2 cut(s)	372, 428
NspI	RCATGY	1 cut(s)	370
NspV	TTCGAA	2 cut(s)	23, 259
OliI	CACNNNNGTG	1 cut(s)	925
PaeR7I	CTCGAG	2 cut(s)	70, 129
PfeI	GAWTC	5 cut(s)	205, 212, 227, 247, 629
Pfl23II	CGTACG	1 cut(s)	789
PflFI	GACNNNGTC	1 cut(s)	590
PkrI	GCNGC	1 cut(s)	1008
Ple19I	CGATCG	1 cut(s)	184
PleI	GAGTC	2 cut(s)	893, 1142
PpsI	GAGTC	2 cut(s)	893, 1142
PspLI	CGTACG	1 cut(s)	789
PspN4I	GGNNCC	3 cut(s)	95, 737, 886
PspPI	GGNCC	1 cut(s)	93
PspXI	VCTCGAGB	1 cut(s)	129
PstNI	CAGNNNCTG	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	145
PsyI	GACNNNGTC	1 cut(s)	590
PvuI	CGATCG	1 cut(s)	184
RsaI	GTAC	5 cut(s)	608, 791, 873, 911, 1109
RsaNI	GTAC	5 cut(s)	607, 790, 872, 910, 1108
RseI	CAYNNNNRTG	1 cut(s)	925
SaqAI	TTAA	3 cut(s)	497, 582, 1089
SatI	GCNGC	1 cut(s)	1007
Sau3AI	GATC	5 cut(s)	100, 145, 181, 388, 784
Sau96I	GGNCC	1 cut(s)	93
SchI	GAGTC	2 cut(s)	893, 1143
SduI	GDGCHC	2 cut(s)	738, 1083
SfaNI	GCATC	7 cut(s)	379, 435, 690, 763, 835, 974, 1026
SfcI	CTRYAG	2 cut(s)	468, 1028
Sfr274I	CTCGAG	2 cut(s)	70, 129
SfuI	TTCGAA	2 cut(s)	23, 259
SlaI	CTCGAG	2 cut(s)	70, 129
SmiMI	CAYNNNNRTG	1 cut(s)	925
SmlI	CTYRAG	2 cut(s)	70, 129
SmoI	CTYRAG	2 cut(s)	70, 129
Sse9I	AATT	6 cut(s)	33, 122, 193, 217, 451, 851
SsiI	CCGC	3 cut(s)	97, 298, 1007
TaaI	ACNGT	7 cut(s)	162, 407, 794, 914, 927, 946, 1032
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	7 cut(s)	23, 71, 130, 180, 259, 809, 982
TasI	AATT	6 cut(s)	33, 122, 193, 217, 451, 851
TatI	WGTACW	1 cut(s)	1107
TauI	GCSGC	1 cut(s)	1009
TfiI	GAWTC	5 cut(s)	205, 212, 227, 247, 629
Tru1I	TTAA	3 cut(s)	497, 582, 1089
Tru9I	TTAA	3 cut(s)	497, 582, 1089
TscAI	CASTG	3 cut(s)	697, 932, 1019
TspDTI	ATGAA	2 cut(s)	166, 557
TspGWI	ACGGA	2 cut(s)	777, 980
TspRI	CASTG	3 cut(s)	697, 932, 1019
Tth111I	GACNNNGTC	1 cut(s)	590
VneI	GTGCAC	1 cut(s)	1079
XapI	RAATTY	2 cut(s)	122, 851
XceI	RCATGY	1 cut(s)	370
XhoI	CTCGAG	2 cut(s)	70, 129
XmiI	GTMKAC	1 cut(s)	402
Zsp2I	ATGCAT	2 cut(s)	372, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.