Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009922

Physical Location & Seq

Genomic Coordinates Forward (+)

32538515 .. 32539950

Gene Structure 1436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0283700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCTTTGTGGCGAGCTCGTGCGGTTTCGTCGGCGCTGTTCAATAGGCTCCTCAGCCGCTCCAGCGCCACCGACACCGCCGCCGCCCACCGCAGTTTTTCCACAGGGGGTACAAATAGTCAGTTTTTTACTTATGACATTAATTCACAATACGGAAGTTGCATGCCGCTTGCTGCTATGCACATTCAAGCCAAAATACACAACATTGAGTTAAACCCTGGTCAAGGTGGCAAGTTAGTTCGGGCTCCGGGAACTTGTGCAAAGATTTTGAAAGAACCCACGTCGAAAGGTTGTCTTGTGAGACTGCCTTCTGGTGTTGAAAAGTGGATTGATTCCAAGTGCCGGGCCGTTATCGGTGAGGTCCCAAGTCAAGGCAAAAAGCCTAAGAAGCTCTATAAAGCTGGGCAAAGCCGGTGGTTAGGCATCAGACCAACAGTGCGAGGAGTGGCAATGAATCCATGTGATCATCCCCATGGTGGAGGGGAGGGCAAGAGCAAGAGTAGTGGTTCTCATGGAAAATGTTCTCGAACACCTTGGGGCAAGCCTTGTAAGGGTGGATACAAGACTGGACCCAACAAGCGTAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000724 GO:0000725 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

196

Amino Acids

21.05

Weight (kDa)

10.33

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_C	PF03947	51 - 179	2.3e-45	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13170 AT3G13170 AT3G13170
fragaria_vesca	FvH4_3g29420
malus_domestica	MD03G1184400.v1.1 MD03G1184700.v1.1
prunus_persica	Prupe.4G241800_v2.0.a1 Prupe.4G241800_v2.0.a1
pyrus_communis	pycom03g13780
rosa_chinensis	RchiOBHm_Chr5g0053841
rosa_laevigata	RLG00000034906
rosa_multiflora	Rmu_sc0007356.1_g000010
rosa_roxburghii	Rroxscaffold_1G00026760
rosa_rugosa	Rorug05G0283600 Rorug05G0283700
rosa_samantha	Rh5AG353400 Rh5BG365000 Rh5CG390100 Rh5DG380000
rosa_wichuraiana	Rw0G002140 Rw0G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	60
AciI	CCGC	7 cut(s)	23, 58, 78, 81, 84, 91, 167
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	5 cut(s)	224, 342, 371, 476, 551
AgsI	TTSAA	4 cut(s)	43, 188, 271, 320
AjiI	CACGTC	1 cut(s)	282
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	3 cut(s)	17, 391, 401
AluI	AGCT	3 cut(s)	17, 391, 401
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	295
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	173
AseI	ATTAAT	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	520
AspLEI	GCGC	2 cut(s)	37, 68
AspS9I	GGNCC	3 cut(s)	345, 361, 569
AsuC2I	CCSGG	2 cut(s)	249, 344
AsuHPI	GGTGA	1 cut(s)	368
AvaII	GGWCC	2 cut(s)	361, 569
BanII	GRGCYC	2 cut(s)	19, 247
BauI	CACGAG	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	160
BceAI	ACGGC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	551
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	2 cut(s)	249, 344
BcoDI	GTCTC	1 cut(s)	295
BfoI	RGCGCY	2 cut(s)	38, 69
BfuI	GTATCC	1 cut(s)	551
BisI	GCNGC	5 cut(s)	58, 81, 84, 167, 174
BlsI	GCNGC	5 cut(s)	59, 82, 85, 168, 175
Bme1390I	CCNGG	3 cut(s)	219, 249, 344
Bme18I	GGWCC	2 cut(s)	361, 569
BmgBI	CACGTC	1 cut(s)	282
BmgT120I	GGNCC	3 cut(s)	345, 361, 569
BmiI	GGNNCC	4 cut(s)	50, 246, 363, 571
BmrFI	CCNGG	3 cut(s)	219, 249, 344
BmsI	GCATC	1 cut(s)	432
BpmI	CTGGAG	1 cut(s)	46
Bpu10I	CCTNAGC	1 cut(s)	53
BpuMI	CCSGG	2 cut(s)	249, 344
BsaJI	CCNNGG	3 cut(s)	217, 472, 533
Bsc4I	CCNNNNNNNGG	5 cut(s)	224, 342, 371, 476, 551
Bse118I	RCCGGY	1 cut(s)	411
Bse1I	ACTGG	1 cut(s)	571
Bse3DI	GCAATG	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	3 cut(s)	217, 472, 533
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	5 cut(s)	224, 342, 371, 476, 551
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	571
BseRI	GAGGAG	2 cut(s)	41, 456
BseXI	GCAGC	1 cut(s)	160
BseYI	CCCAGC	1 cut(s)	401
BshFI	GGCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	3 cut(s)	248, 343, 412
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	5 cut(s)	224, 342, 371, 476, 551
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	347
Bsp1286I	GDGCHC	2 cut(s)	19, 247
Bsp143I	GATC	1 cut(s)	463
Bsp19I	CCATGG	1 cut(s)	472
BspACI	CCGC	7 cut(s)	23, 58, 78, 81, 84, 91, 167
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	4 cut(s)	50, 246, 363, 571
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	571
BssAI	RCCGGY	1 cut(s)	411
BssECI	CCNNGG	3 cut(s)	217, 472, 533
BssMI	GATC	1 cut(s)	463
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	2 cut(s)	472, 533
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	436
BstC8I	GCNNGC	4 cut(s)	15, 164, 171, 542
BstDEI	CTNAG	2 cut(s)	53, 384
BstDSI	CCRYGG	1 cut(s)	472
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	466
BstH2I	RGCGCY	2 cut(s)	38, 69
BstHHI	GCGC	2 cut(s)	37, 68
BstKTI	GATC	1 cut(s)	466
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	463
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 388
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	3 cut(s)	217, 247, 342
BstV1I	GCAGC	1 cut(s)	160
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	1 cut(s)	347
BtgI	CCRYGG	1 cut(s)	472
BtrI	CACGTC	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	466
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	4 cut(s)	15, 164, 171, 542
CfoI	GCGC	2 cut(s)	37, 68
Cfr10I	RCCGGY	1 cut(s)	411
Cfr13I	GGNCC	3 cut(s)	345, 361, 569
Csp6I	GTAC	1 cut(s)	111
CspCI	CAANNNNNGTGG	4 cut(s)	395, 430, 484, 519
CviAII	CATG	4 cut(s)	163, 459, 473, 512
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	2 cut(s)	53, 384
DpnI	GATC	1 cut(s)	465
DpnII	GATC	1 cut(s)	463
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	472, 533
Eco24I	GRGCYC	2 cut(s)	19, 247
Eco47I	GGWCC	2 cut(s)	361, 569
Eco53kI	GAGCTC	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	2 cut(s)	472, 533
EcoT38I	GRGCYC	2 cut(s)	19, 247
ErhI	CCWWGG	2 cut(s)	472, 533
FaeI	CATG	4 cut(s)	166, 462, 476, 515
FaiI	YATR	7 cut(s)	135, 164, 179, 396, 460, 474, 513
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	4 cut(s)	162, 458, 472, 511
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	5 cut(s)	58, 81, 84, 167, 174
FokI	GGATG	1 cut(s)	453
FriOI	GRGCYC	2 cut(s)	19, 247
Fsp4HI	GCNGC	5 cut(s)	58, 81, 84, 167, 174
GlaI	GCGC	2 cut(s)	36, 67
GluI	GCNGC	5 cut(s)	58, 81, 84, 167, 174
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	46
HaeII	RGCGCY	2 cut(s)	38, 69
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	3 cut(s)	248, 343, 412
HhaI	GCGC	2 cut(s)	37, 68
Hin1II	CATG	4 cut(s)	166, 462, 476, 515
Hin6I	GCGC	2 cut(s)	35, 66
HinP1I	GCGC	2 cut(s)	35, 66
HinfI	GANTC	2 cut(s)	332, 454
HpaII	CCGG	3 cut(s)	248, 343, 412
HphI	GGTGA	1 cut(s)	368
Hpy188I	TCNGA	1 cut(s)	428
Hpy188III	TCNNGA	1 cut(s)	525
Hpy99I	CGWCG	2 cut(s)	34, 286
HpyAV	CCTTC	1 cut(s)	318
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	3 cut(s)	162, 181, 260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 388
HpyF3I	CTNAG	2 cut(s)	53, 384
HpySE526I	ACGT	1 cut(s)	281
Hsp92II	CATG	4 cut(s)	166, 462, 476, 515
HspAI	GCGC	2 cut(s)	35, 66
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	1 cut(s)	463
LmnI	GCTCC	3 cut(s)	54, 65, 250
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	432
MaeII	ACGT	1 cut(s)	281
MalI	GATC	1 cut(s)	465
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	1 cut(s)	463
MhlI	GDGCHC	2 cut(s)	19, 247
MluCI	AATT	1 cut(s)	142
MnlI	CCTC	5 cut(s)	62, 352, 434, 473, 478
MroXI	GAANNNNTTC	1 cut(s)	520
MseI	TTAA	2 cut(s)	141, 212
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	3 cut(s)	248, 343, 412
MspR9I	CCNGG	3 cut(s)	219, 249, 344
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	63, 388
NciI	CCSGG	2 cut(s)	249, 344
NcoI	CCATGG	1 cut(s)	472
NdeII	GATC	1 cut(s)	463
NlaIII	CATG	4 cut(s)	166, 462, 476, 515
NlaIV	GGNNCC	4 cut(s)	50, 246, 363, 571
NspI	RCATGY	1 cut(s)	166
PaeI	GCATGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	520
PfeI	GAWTC	2 cut(s)	332, 454
PfoI	TCCNGGA	1 cut(s)	247
PkrI	GCNGC	5 cut(s)	59, 82, 85, 168, 175
PpuMI	RGGWCCY	1 cut(s)	361
PshBI	ATTAAT	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	4 cut(s)	50, 246, 363, 571
PspPI	GGNCC	3 cut(s)	345, 361, 569
PspPPI	RGGWCCY	1 cut(s)	361
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	471
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	141, 212
SatI	GCNGC	5 cut(s)	58, 81, 84, 167, 174
Sau3AI	GATC	1 cut(s)	463
Sau96I	GGNCC	3 cut(s)	345, 361, 569
ScrFI	CCNGG	3 cut(s)	219, 249, 344
SduI	GDGCHC	2 cut(s)	19, 247
SetI	ASST	8 cut(s)	19, 229, 284, 292, 363, 393, 403, 535
SfaNI	GCATC	1 cut(s)	432
SinI	GGWCC	2 cut(s)	361, 569
SmiMI	CAYNNNNRTG	1 cut(s)	471
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	7 cut(s)	23, 58, 78, 81, 84, 91, 167
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	3 cut(s)	217, 247, 342
StyI	CCWWGG	2 cut(s)	472, 533
TaaI	ACNGT	1 cut(s)	436
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	2 cut(s)	284, 526
TasI	AATT	1 cut(s)	142
TauI	GCSGC	4 cut(s)	60, 83, 86, 169
TfiI	GAWTC	2 cut(s)	332, 454
Tru1I	TTAA	2 cut(s)	141, 212
Tru9I	TTAA	2 cut(s)	141, 212
TscAI	CASTG	1 cut(s)	441
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	467
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	441
VpaK11BI	GGWCC	2 cut(s)	361, 569
VspI	ATTAAT	1 cut(s)	141
XagI	CCTNNNNNAGG	1 cut(s)	222
XceI	RCATGY	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.