Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009922

Physical Location & Seq

Genomic Coordinates Reverse (-)

32500524 .. 32527620

Gene Structure 27097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0283600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3858 bp

ATGGCTTTGAAAATCTTACTTTTCAGAGTGGGAGTTTCTTATTATGATTCCAGTATTCGCCAACTTCACGTGATGGAAGTTTGGGAAGATGGCAGCATGGACTTCCCCCTAATTGATATGGATGGAACAACAGAGGCTTTTACTGTGAAGCTTGTGAAAAGTTCAGTATTTAGCTATGAGCAAGCATGGCACAGATTGATATATCTTCGAGTAACAGGAATGGATGATGGGTTCGACATCAAGGAAAGAATTTGTTATTTGAGTTCTATGATGGACATGGGAAGTGATGTTCAAGTTCGTACCAGTGGAGGTCTTCTTGCCATATTAGAGAATGAAAGGATTGTAGACACACTTGAACAAATGGAATGCGGCAATGCATCTATTGCAATCGATTCTGTTATAGAAGTTTCATTGTATCTTTTTATGTGTCTTTGGGAAATGGGTACTGAGGCTTCAGCAAGACTTGTTAGTAAATTTATAATTTTCTGCCTCATCTTCACTCTTTGGCAGCTTGGTTCTGAATTCAAAAATCGGAGTATAGCTCAAACGTTGCCCGATGAAGAAGTGAGAGCTTTTAAGCAAGTAGCAAAAAAGTTGGGGTTAAACCTTGGATATCCTGGAGTGTTCTTAGATGGCTCATTCTGCAACCAGAGCTTATTTCTTGGCATCGGCTGTAACTGCACTTTTCAAAACGACACCATCTGCCATATCAGAAAAATTGAACTGAGTGCTAGCGGTTTGACTGGAGTTATACCTGATGAACTGGCCAATCTCACACATCTAGAGAGCCTGGATCTCAGTATGAATCAATTGACTGGTTCCATACCTGCTAGCTTGGGGAATTTATCTTGGCTCAATGACCTGGATATTTCGAACAATCAATTGATCGGGTCCATTCCAGAGAGTTTGGGGAATATAAAATTTCAAGCGCAGGATCTTTCAAGCAATCATTTGAGTGGATCCATACCCGTCACTTTAGGGAAATTGGCTGTCCCATCGGCTGCCAACAGCGGATCGCCCCTAGCGCTCTCCCTGGATCTTTCAAACAATCAATTGACCGGGCCTATACCAGAGAGCTTAGGGAATTTGACTTTTGGGAACACACATATTTATCTGTACGACAACTTTCTCAGCGGCTCTATACCAGCATCTTTGGGTGCATTGTCTCATCTCTGGACACTGGATTTGCATAACAATGGAATCTTTGGTACTCTCCCACAGACACTTGGAAATTTGACATACCTTCGAGGCTTCAAGGTCGGATCCAACAGTATCACCGGCACATTACCAAAAAGTTTTGCCAGCCTTCAATCGCTGACGAAATTTTCTGCAGCTGGTAACTATTTGTCTGGCCCTTTACCTGACTTCATAGCCAACTGGACTGAAATCGAAGAACTTTATCTCAACGGAAACAATTTCCACGGAAGGATACCTGCCGGAATTTTTAATATATCGTATCTACAAATTTTGGCAATAAGTGACGTCGGAGCAGACTCTAATTTCCAGTTCCCACTATCTACACATGTGACGACAAGTTTTTTTCATCGTATTCTGATACTAAGAAACTGCTCAATCACTGGTCAAATTCCTTCTTACATTGGAAATATGTCATCATTATCGAACCTAGACTTGAGCTTCAACAACTTAACGGGTAGAATCCCAGATGCTTTGAAAAACTTAAATTTAAGTTACATATCTTTTTCAAACAATATGCTTTCTGGGGAAATTCCTGATTGGATTCAAAATGCAAACTGGAGTAAGATTGATCTTTCATACAATAATTTTTCAAAACCAACATTTGAAAAATCGTCCAAGTTAGACTGGAATTTGTTTTCCTGCTGCTGCAACTTCTCAACCTGTCTGCCAAATACAACGGACCCAACCACGGAGAAGTATTGTCCAAGGCCTAATTACCATTCATTGTTTATAAATTGTGGTGGTGGGGAACTGATTAAGGTTGATGGAAATGTATATGATCAAGATAATGATACATTACAGTTTTACCTAAGTCCAAAAGGAAACTGGGCTCGAAGTAGTGCTGGAAGCACCGTTGATGCCTTCAATTCCAGTGAATTCTTAAAAAGCATGAGATGTGGGCTTTCCTCTGAAGCAACTTTATACAAGAGTGCTCGCAGTTCCCCGGTCTCTCTAAAATATTACGGGTTCTGTTTACGTAAAGGCAAATACAGGGTAATACTTCATTTTGCTGAAATTGTTTGCGAGGATATGAGTTACAAAAGTACAGATAAACGCATATTTGACGTATATATTCAGGGTGAGAGGAAACTAAGGGATTTCAACATTATAGAGAAGGCAGGAGGTCCGAATTTAGTACATGAAGAAAATTTCACAGCGGTTAATGTAAATGATGGTGTATTAGAGATCCACTTCTACTCGGCGGGAAAAGGGACTCTTCAGGGACCTCTCATATCTGCTATATCCGTAACTCCAGAGTACAAGCTACACAAACAACTATCTCCTTTGCACATAGCGCTCATTACTGTGGCCTCAATCATAGCTTTCGTATTGCTTTTATTGCTTTTTGCCTGGATGATGGGATGGCTGGGTACAGATCACTTACAAGAAATAGATATAGGTCTAGAAAAGCCTGTCACCCTCAAACAATTAAAAGTTGCTACAGGGAATTTTAGCAAGAGGAAAGAGATTGGTCAAGGGGGTTTTGGGACCGTTTACAAGGCTGAAGTGCAAGGAAAAATTGTAGCTGTGAAGAAACTTTCCTCTCATTCAGAGGAAAGGATAAATCAGTTGAAAAATGAGTTTTATGCTTTGAAATCAATGAGTCAAGAAAACCTTGTTCAGTTACTGGACGTTTACAATGCAAAAGGCCTGCATTTGCTCATCTATGAATATATGCAAAACAAATCCCTTGCACACGCTTTATTTGACTCAAAGTCCAAATTGAAACTTGATTGGGAAGCTAGGTTTAACATTTGCTTGGGAATAGCTAGGGGATTGGCGTATCTACATGAGCATCCCAGGCTGAAGATGGTTCACAGGGACATTAAATCAGCTAATATTCTTCTCGATGGAAACCTCAAGGCTAAAATATCAGACTTTGGATTGGCAAGCCTTTACACCGAAGATGATCAATTCAAGTTCGTCAAAGTAGAAGTGACAGAGGGATATATGGCACCCGAGTATGTTCGAGGAGTTGTGACATCTAAAGCTGATGTCTACAGTTTTGGGGTGGTTATACTTGAAACTGTTAGTGGAAGGAAAAATGCAGGACACAAGCGAGATAGCCAGGAAACTGAATTTCTTTTAGACACGGCTTGTGATTTACAGCGAAAAGGAAAGTTGGTGGACTTGGTTGATAAAACCTTGTCTAACAAATATGATGCAAAACAAGCCATCATCATCTTGAATTTAGCAGTAAAGTGCATCAATATATCGCCAACTCTGAGGCCTACTATGTCTGAAGTTGTGAGTGTTCTCGTTGGCGACAAAAAAATTGAGGAGATCTGTTCCTCTGATCAGATTGAGGACATCAACGACCCCCATGTGAAGGATATCGCAGAGTTCGCAGTGTCGAAGTACAACAAGAAATCCGGGAAGAAGCTGGAGTTACAGAGCGTGGTGAAGGGCGAGACTCGGGTCGTCCCCGGCGAGAATTACCGGCTCGTCATCGCCGTCAAGGATAACTCGGTGGCGGCCAAGTACGAGGGCGTTGTGTATGAGAGGTTTTGGGAGCATACTAGGGAATTGCTCTCCTTCGATAGTCACATTGCACAAGTTGATTCCTCTGTTTCTATGGAAGTAACCTCGAGAGCATCCACACCATCCAATTTGATCAAAGGGGAAGATGAAACAGAACACATTTCTGAGAGTACCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000724 GO:0000725 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

1285

Amino Acids

142.63

Weight (kDa)

5.83

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	236 - 295	5e-07	Leucine rich repeat
LRR_14	PF23598	384 - 468	5.6e-06	Leucine-rich repeat region
Malectin	PF11721	640 - 812	5.5e-30	Malectin domain
Pkinase	PF00069	884 - 1149	1.4e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	885 - 1151	1.2e-42	Protein tyrosine and serine/threonine kinase
SQAPI	PF16845	1167 - 1246	1.1e-27	Aspartic acid proteinase inhibitor
Cystatin	PF00031	1167 - 1224	4.7e-11	Cystatin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13170 AT3G13170 AT3G13170
fragaria_vesca	FvH4_3g29420
malus_domestica	MD03G1184400.v1.1 MD03G1184700.v1.1
prunus_persica	Prupe.4G241800_v2.0.a1 Prupe.4G241800_v2.0.a1
pyrus_communis	pycom03g13780
rosa_chinensis	RchiOBHm_Chr5g0053841
rosa_laevigata	RLG00000034906
rosa_multiflora	Rmu_sc0007356.1_g000010
rosa_roxburghii	Rroxscaffold_1G00026760
rosa_rugosa	Rorug05G0283600 Rorug05G0283700
rosa_samantha	Rh5AG353400 Rh5BG365000 Rh5CG390100 Rh5DG380000
rosa_wichuraiana	Rw0G002140 Rw0G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	479, 1928
AatII	GACGTC	1 cut(s)	1485
Acc36I	ACCTGC	2 cut(s)	835, 1441
AccB1I	GGYRCC	1 cut(s)	3151
AccI	GTMKAC	2 cut(s)	345, 3195
AciI	CCGC	7 cut(s)	369, 735, 1011, 1134, 2354, 2399, 3671
AclI	AACGTT	1 cut(s)	548
AclWI	GGATC	9 cut(s)	801, 942, 954, 967, 1021, 1044, 1257, 1270, 2377
AcoI	YGGCCR	2 cut(s)	765, 3672
AcuI	CTGAAG	6 cut(s)	438, 2127, 2399, 2721, 3023, 3459
AcvI	CACGTG	1 cut(s)	70
AcyI	GRCGYC	1 cut(s)	1482
AfeI	AGCGCT	2 cut(s)	1026, 2493
AfiI	CCNNNNNNNGG	2 cut(s)	1885, 3526
AflIII	ACRYGT	1 cut(s)	1522
AhdI	GACNNNNNGTC	1 cut(s)	2911
AjnI	CCWGG	7 cut(s)	616, 789, 861, 1032, 2546, 2996, 3264
AloI	GAACNNNNNNTCC	4 cut(s)	215, 247, 273, 305
Alw21I	GWGCWC	1 cut(s)	2131
Alw26I	GTCTC	3 cut(s)	1170, 2149, 3602
AlwI	GGATC	9 cut(s)	801, 942, 954, 967, 1021, 1044, 1257, 1270, 2377
AlwNI	CAGNNNCTG	1 cut(s)	2824
Ama87I	CYCGRG	3 cut(s)	3155, 3612, 3784
Aor51HI	AGCGCT	2 cut(s)	1026, 2493
AoxI	GGCC	8 cut(s)	765, 1061, 1351, 1904, 2505, 2845, 3425, 3672
ApeKI	GCWGC	6 cut(s)	93, 508, 1001, 1331, 1839, 1842
ArsI	GACNNNNNNTTYG	2 cut(s)	1168, 1200
AspLEI	GCGC	3 cut(s)	931, 1027, 2494
AspS9I	GGNCC	7 cut(s)	891, 1061, 1352, 1876, 2321, 2420, 2685
AsuC2I	CCSGG	4 cut(s)	1060, 2141, 3571, 3624
AsuHPI	GGTGA	4 cut(s)	1267, 2288, 2605, 3610
AsuII	TTCGAA	1 cut(s)	872
AsuNHI	GCTAGC	2 cut(s)	731, 830
AvaI	CYCGRG	3 cut(s)	3155, 3612, 3784
AvaII	GGWCC	5 cut(s)	891, 1876, 2321, 2420, 2685
BalI	TGGCCA	1 cut(s)	767
BamHI	GGATCC	2 cut(s)	959, 1262
BanI	GGYRCC	1 cut(s)	3151
BanII	GRGCYC	1 cut(s)	2029
BarI	GAAGNNNNNNTAC	2 cut(s)	436, 468
BbrPI	CACGTG	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	2131
BbvI	GCAGC	6 cut(s)	105, 520, 988, 1343, 1826, 1829
BceAI	ACGGC	2 cut(s)	3306, 3635
BciT130I	CCWGG	7 cut(s)	618, 791, 863, 1034, 2548, 2998, 3266
BciVI	GTATCC	1 cut(s)	1422
BclI	TGATCA	4 cut(s)	1975, 3106, 3493, 3810
BcnI	CCSGG	4 cut(s)	1060, 2141, 3571, 3624
BcoDI	GTCTC	3 cut(s)	1170, 2149, 3602
BfmI	CTRYAG	3 cut(s)	1329, 2637, 3196
BfoI	RGCGCY	2 cut(s)	1028, 2495
BfuAI	ACCTGC	2 cut(s)	835, 1441
BfuI	GTATCC	1 cut(s)	1422
BglII	AGATCT	1 cut(s)	3480
BisI	GCNGC	9 cut(s)	94, 370, 509, 1002, 1135, 1332, 1840, 1843, 3672
BlsI	GCNGC	9 cut(s)	95, 371, 510, 1003, 1136, 1333, 1841, 1844, 3673
Bme18I	GGWCC	5 cut(s)	891, 1876, 2321, 2420, 2685
BmeRI	GACNNNNNGTC	1 cut(s)	2911
BmeT110I	CYCGRG	3 cut(s)	3155, 3612, 3784
BmgT120I	GGNCC	7 cut(s)	891, 1061, 1352, 1876, 2321, 2420, 2685
BmiI	GGNNCC	8 cut(s)	820, 892, 961, 1264, 1878, 2421, 2686, 3153
BmrI	ACTGGG	1 cut(s)	2032
BmsI	GCATC	9 cut(s)	386, 675, 1157, 1654, 2044, 3001, 3349, 3411, 3800
BmtI	GCTAGC	2 cut(s)	735, 834
BmuI	ACTGGG	1 cut(s)	2032
BoxI	GACNNNNGTC	1 cut(s)	3614
BpiI	GAAGAC	1 cut(s)	305
BplI	GAGNNNNNCTC	2 cut(s)	526, 558
BpmI	CTGGAG	5 cut(s)	639, 765, 1774, 2433, 3602
Bpu10I	CCTNAGC	1 cut(s)	1078
Bpu14I	TTCGAA	1 cut(s)	872
BpuEI	CTTGAG	2 cut(s)	1651, 3041
BpuMI	CCSGG	4 cut(s)	1060, 2141, 3571, 3624
Bsa29I	ATCGAT	1 cut(s)	390
BsaAI	YACGTR	2 cut(s)	70, 2174
BsaHI	GRCGYC	1 cut(s)	1482
BsaI	GGTCTC	1 cut(s)	2149
BsaJI	CCNNGG	8 cut(s)	607, 1032, 1420, 1884, 1901, 2139, 2996, 3622
Bsc4I	CCNNNNNNNGG	2 cut(s)	1885, 3526
Bse118I	RCCGGY	2 cut(s)	1277, 3636
Bse3DI	GCAATG	2 cut(s)	379, 3744
BseBI	CCWGG	7 cut(s)	618, 791, 863, 1034, 2548, 2998, 3266
BseCI	ATCGAT	1 cut(s)	390
BseDI	CCNNGG	8 cut(s)	607, 1032, 1420, 1884, 1901, 2139, 2996, 3622
BseGI	GGATG	7 cut(s)	127, 229, 2556, 2564, 2992, 3791, 3800
BseLI	CCNNNNNNNGG	2 cut(s)	1885, 3526
BseMI	GCAATG	2 cut(s)	379, 3744
BseMII	CTCAG	6 cut(s)	438, 716, 811, 1144, 3413, 3834
BseRI	GAGGAG	2 cut(s)	3183, 3491
BseXI	GCAGC	6 cut(s)	105, 520, 988, 1343, 1826, 1829
BseYI	CCCAGC	1 cut(s)	2563
BsgI	GTGCAG	1 cut(s)	664
BshFI	GGCC	8 cut(s)	767, 1063, 1353, 1906, 2507, 2847, 3427, 3674
BshNI	GGYRCC	1 cut(s)	3151
BshVI	ATCGAT	1 cut(s)	390
BsiHKAI	GWGCWC	1 cut(s)	2131
BsiHKCI	CYCGRG	3 cut(s)	3155, 3612, 3784
BsiSI	CCGG	7 cut(s)	1059, 1278, 1437, 2141, 3570, 3624, 3637
BslFI	GGGAC	6 cut(s)	977, 2422, 2433, 2698, 3032, 3605
BslI	CCNNNNNNNGG	2 cut(s)	1885, 3526
BsmAI	GTCTC	3 cut(s)	1170, 2149, 3602
BsmFI	GGGAC	6 cut(s)	977, 2422, 2433, 2698, 3032, 3605
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	8 cut(s)	767, 1063, 1353, 1906, 2507, 2847, 3427, 3674
Bso31I	GGTCTC	1 cut(s)	2149
BsoBI	CYCGRG	3 cut(s)	3155, 3612, 3784
Bsp119I	TTCGAA	1 cut(s)	872
Bsp1286I	GDGCHC	2 cut(s)	2029, 2131
BspACI	CCGC	7 cut(s)	369, 735, 1011, 1134, 2354, 2399, 3671
BspANI	GGCC	8 cut(s)	767, 1063, 1353, 1906, 2507, 2847, 3427, 3674
BspCNI	CTCAG	6 cut(s)	439, 717, 810, 1143, 3414, 3835
BspDI	ATCGAT	1 cut(s)	390
BspLI	GGNNCC	8 cut(s)	820, 892, 961, 1264, 1878, 2421, 2686, 3153
BspMAI	CTGCAG	1 cut(s)	1333
BspMI	ACCTGC	2 cut(s)	835, 1441
BspOI	GCTAGC	2 cut(s)	735, 834
BspPI	GGATC	9 cut(s)	801, 942, 954, 967, 1021, 1044, 1257, 1270, 2377
BspT104I	TTCGAA	1 cut(s)	872
BspT107I	GGYRCC	1 cut(s)	3151
BspTNI	GGTCTC	1 cut(s)	2149
BsrDI	GCAATG	2 cut(s)	379, 3744
BsrFI	RCCGGY	2 cut(s)	1277, 3636
BssAI	RCCGGY	2 cut(s)	1277, 3636
BssECI	CCNNGG	8 cut(s)	607, 1032, 1420, 1884, 1901, 2139, 2996, 3622
BssNI	GRCGYC	1 cut(s)	1482
BssT1I	CCWWGG	2 cut(s)	607, 1901
Bst2UI	CCWGG	7 cut(s)	618, 791, 863, 1034, 2548, 2998, 3266
Bst4CI	ACNGT	8 cut(s)	145, 1271, 1998, 2050, 2503, 2689, 3200, 3226
Bst6I	CTCTTC	1 cut(s)	2418
BstACI	GRCGYC	1 cut(s)	1482
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstBAI	YACGTR	2 cut(s)	70, 2174
BstBI	TTCGAA	1 cut(s)	872
BstC8I	GCNNGC	7 cut(s)	183, 733, 832, 1303, 2131, 2849, 3088
BstDSI	CCRYGG	2 cut(s)	1420, 1884
BstF5I	GGATG	7 cut(s)	127, 229, 2556, 2564, 2992, 3791, 3800
BstH2I	RGCGCY	2 cut(s)	1028, 2495
BstHHI	GCGC	3 cut(s)	931, 1027, 2494
BstMAI	GTCTC	3 cut(s)	1170, 2149, 3602
BstNI	CCWGG	7 cut(s)	618, 791, 863, 1034, 2548, 2998, 3266
BstNSI	RCATGY	1 cut(s)	1526
BstPAI	GACNNNNGTC	1 cut(s)	3614
BstSFI	CTRYAG	3 cut(s)	1329, 2637, 3196
BstSNI	TACGTA	1 cut(s)	2174
BstV1I	GCAGC	6 cut(s)	105, 520, 988, 1343, 1826, 1829
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	7 cut(s)	793, 934, 959, 1036, 1262, 2382, 3480
BstYI	RGATCY	7 cut(s)	793, 934, 959, 1036, 1262, 2382, 3480
Bsu15I	ATCGAT	1 cut(s)	390
BsuI	GTATCC	1 cut(s)	1422
BsuRI	GGCC	8 cut(s)	767, 1063, 1353, 1906, 2507, 2847, 3427, 3674
BsuTUI	ATCGAT	1 cut(s)	390
BtgI	CCRYGG	2 cut(s)	1420, 1884
BtgZI	GCGATG	1 cut(s)	3631
BtsCI	GGATG	7 cut(s)	127, 229, 2556, 2564, 2992, 3791, 3800
BtsI	GCAGTG	1 cut(s)	3552
BtsIMutI	CAGTG	5 cut(s)	310, 1178, 1575, 2074, 3552
BveI	ACCTGC	2 cut(s)	835, 1441
Cac8I	GCNNGC	7 cut(s)	183, 733, 832, 1303, 2131, 2849, 3088
CaiI	CAGNNNCTG	1 cut(s)	2824
CfoI	GCGC	3 cut(s)	931, 1027, 2494
Cfr10I	RCCGGY	2 cut(s)	1277, 3636
Cfr13I	GGNCC	7 cut(s)	891, 1061, 1352, 1876, 2321, 2420, 2685
ClaI	ATCGAT	1 cut(s)	390
CviAII	CATG	8 cut(s)	97, 186, 277, 1523, 2086, 2336, 2987, 3521
DriI	GACNNNNNGTC	1 cut(s)	2911
EaeI	YGGCCR	2 cut(s)	765, 3672
Eam1104I	CTCTTC	1 cut(s)	2418
Eam1105I	GACNNNNNGTC	1 cut(s)	2911
EarI	CTCTTC	1 cut(s)	2418
Eco105I	TACGTA	1 cut(s)	2174
Eco130I	CCWWGG	2 cut(s)	607, 1901
Eco147I	AGGCCT	3 cut(s)	1906, 2847, 3427
Eco24I	GRGCYC	1 cut(s)	2029
Eco31I	GGTCTC	1 cut(s)	2149
Eco32I	GATATC	2 cut(s)	614, 3532
Eco47I	GGWCC	5 cut(s)	891, 1876, 2321, 2420, 2685
Eco47III	AGCGCT	2 cut(s)	1026, 2493
Eco57I	CTGAAG	6 cut(s)	438, 2127, 2399, 2721, 3023, 3459
Eco72I	CACGTG	1 cut(s)	70
Eco88I	CYCGRG	3 cut(s)	3155, 3612, 3784
EcoO109I	RGGNCCY	1 cut(s)	2420
EcoRI	GAATTC	2 cut(s)	521, 2072
EcoRII	CCWGG	7 cut(s)	616, 789, 861, 1032, 2546, 2996, 3264
EcoRV	GATATC	2 cut(s)	614, 3532
EcoT14I	CCWWGG	2 cut(s)	607, 1901
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	2029
ErhI	CCWWGG	2 cut(s)	607, 1901
FaeI	CATG	8 cut(s)	100, 189, 280, 1526, 2089, 2339, 2990, 3524
FalI	AAGNNNNNCTT	4 cut(s)	2397, 2429, 2796, 2828
FaqI	GGGAC	6 cut(s)	977, 2422, 2433, 2698, 3032, 3605
FatI	CATG	8 cut(s)	96, 185, 276, 1522, 2085, 2335, 2986, 3520
FauI	CCCGC	1 cut(s)	2392
FbaI	TGATCA	4 cut(s)	1975, 3106, 3493, 3810
FblI	GTMKAC	2 cut(s)	345, 3195
Fnu4HI	GCNGC	9 cut(s)	94, 370, 509, 1002, 1135, 1332, 1840, 1843, 3672
FokI	GGATG	7 cut(s)	134, 236, 2563, 2571, 2979, 3778, 3787
FriOI	GRGCYC	1 cut(s)	2029
Fsp4HI	GCNGC	9 cut(s)	94, 370, 509, 1002, 1135, 1332, 1840, 1843, 3672
GlaI	GCGC	3 cut(s)	930, 1026, 2493
GluI	GCNGC	9 cut(s)	94, 370, 509, 1002, 1135, 1332, 1840, 1843, 3672
GsaI	CCCAGC	1 cut(s)	2567
GsuI	CTGGAG	5 cut(s)	639, 765, 1774, 2433, 3602
HaeII	RGCGCY	2 cut(s)	1028, 2495
HaeIII	GGCC	8 cut(s)	767, 1063, 1353, 1906, 2507, 2847, 3427, 3674
HapII	CCGG	7 cut(s)	1059, 1278, 1437, 2141, 3570, 3624, 3637
HhaI	GCGC	3 cut(s)	931, 1027, 2494
Hin1I	GRCGYC	1 cut(s)	1482
Hin1II	CATG	8 cut(s)	100, 189, 280, 1526, 2089, 2339, 2990, 3524
Hin6I	GCGC	3 cut(s)	929, 1025, 2492
HinP1I	GCGC	3 cut(s)	929, 1025, 2492
HindIII	AAGCTT	1 cut(s)	149
HpaII	CCGG	7 cut(s)	1059, 1278, 1437, 2141, 3570, 3624, 3637
HphI	GGTGA	4 cut(s)	1267, 2288, 2605, 3610
Hpy166II	GTNNAC	7 cut(s)	346, 2171, 2692, 2833, 3013, 3196, 3325
Hpy8I	GTNNAC	7 cut(s)	346, 2171, 2692, 2833, 3013, 3196, 3325
Hpy99I	CGWCG	1 cut(s)	1487
HpyCH4III	ACNGT	8 cut(s)	145, 1271, 1998, 2050, 2503, 2689, 3200, 3226
HpyCH4IV	ACGT	6 cut(s)	69, 548, 1482, 2173, 2262, 2829
HpySE526I	ACGT	6 cut(s)	69, 548, 1482, 2173, 2262, 2829
Hsp92I	GRCGYC	1 cut(s)	1482
Hsp92II	CATG	8 cut(s)	100, 189, 280, 1526, 2089, 2339, 2990, 3524
HspAI	GCGC	3 cut(s)	929, 1025, 2492
Ksp22I	TGATCA	4 cut(s)	1975, 3106, 3493, 3810
LmnI	GCTCC	2 cut(s)	1487, 3709
Lsp1109I	GCAGC	6 cut(s)	105, 520, 988, 1343, 1826, 1829
LweI	GCATC	9 cut(s)	386, 675, 1157, 1654, 2044, 3001, 3349, 3411, 3800
MaeII	ACGT	6 cut(s)	69, 548, 1482, 2173, 2262, 2829
MfeI	CAATTG	3 cut(s)	809, 881, 1052
MflI	RGATCY	7 cut(s)	793, 934, 959, 1036, 1262, 2382, 3480
MhlI	GDGCHC	2 cut(s)	2029, 2131
MlsI	TGGCCA	1 cut(s)	767
MluNI	TGGCCA	1 cut(s)	767
MlyI	GAGTC	5 cut(s)	1487, 2404, 2809, 2900, 3604
MmeI	TCCRAC	3 cut(s)	1240, 1290, 1465
Mox20I	TGGCCA	1 cut(s)	767
Mph1103I	ATGCAT	1 cut(s)	379
MscI	TGGCCA	1 cut(s)	767
MslI	CAYNNNNRTG	3 cut(s)	954, 1194, 2501
Msp20I	TGGCCA	1 cut(s)	767
MspA1I	CMGCKG	4 cut(s)	1011, 1134, 1334, 2354
MspI	CCGG	7 cut(s)	1059, 1278, 1437, 2141, 3570, 3624, 3637
MunI	CAATTG	3 cut(s)	809, 881, 1052
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	7 cut(s)	618, 791, 863, 1034, 2548, 2998, 3266
NciI	CCSGG	4 cut(s)	1060, 2141, 3571, 3624
NheI	GCTAGC	2 cut(s)	731, 830
NlaIII	CATG	8 cut(s)	100, 189, 280, 1526, 2089, 2339, 2990, 3524
NlaIV	GGNNCC	8 cut(s)	820, 892, 961, 1264, 1878, 2421, 2686, 3153
NmeAIII	GCCGAG	1 cut(s)	2375
NmuCI	GTSAC	7 cut(s)	970, 1478, 1525, 2611, 3133, 3175, 3740
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	1 cut(s)	1526
NspV	TTCGAA	1 cut(s)	872
PaeR7I	CTCGAG	1 cut(s)	3784
PceI	AGGCCT	3 cut(s)	1906, 2847, 3427
PciI	ACATGT	1 cut(s)	1522
PcsI	WCGNNNNNNNCGW	2 cut(s)	3624, 3648
PctI	GAATGC	1 cut(s)	371
PfeI	GAWTC	7 cut(s)	47, 392, 805, 1200, 1656, 1738, 3758
PfoI	TCCNGGA	2 cut(s)	616, 3569
PkrI	GCNGC	9 cut(s)	95, 371, 510, 1003, 1136, 1333, 1841, 1844, 3673
PleI	GAGTC	5 cut(s)	1487, 2404, 2808, 2900, 3604
PmaCI	CACGTG	1 cut(s)	70
PmlI	CACGTG	1 cut(s)	70
PpsI	GAGTC	5 cut(s)	1487, 2404, 2808, 2900, 3604
Ppu21I	YACGTR	2 cut(s)	70, 2174
PpuMI	RGGWCCY	1 cut(s)	2420
PscI	ACATGT	1 cut(s)	1522
PshAI	GACNNNNGTC	1 cut(s)	3614
PsiI	TTATAA	2 cut(s)	479, 1928
Psp1406I	AACGTT	1 cut(s)	548
Psp5II	RGGWCCY	1 cut(s)	2420
Psp6I	CCWGG	7 cut(s)	616, 789, 861, 1032, 2546, 2996, 3264
PspCI	CACGTG	1 cut(s)	70
PspFI	CCCAGC	1 cut(s)	2563
PspGI	CCWGG	7 cut(s)	616, 789, 861, 1032, 2546, 2996, 3264
PspN4I	GGNNCC	8 cut(s)	820, 892, 961, 1264, 1878, 2421, 2686, 3153
PspPI	GGNCC	7 cut(s)	891, 1061, 1352, 1876, 2321, 2420, 2685
PspPPI	RGGWCCY	1 cut(s)	2420
PstI	CTGCAG	1 cut(s)	1333
PstNI	CAGNNNCTG	1 cut(s)	2824
PsuI	RGATCY	7 cut(s)	793, 934, 959, 1036, 1262, 2382, 3480
PvuII	CAGCTG	1 cut(s)	1334
RseI	CAYNNNNRTG	3 cut(s)	954, 1194, 2501
SatI	GCNGC	9 cut(s)	94, 370, 509, 1002, 1135, 1332, 1840, 1843, 3672
Sau96I	GGNCC	7 cut(s)	891, 1061, 1352, 1876, 2321, 2420, 2685
SchI	GAGTC	5 cut(s)	1487, 2404, 2809, 2900, 3604
SduI	GDGCHC	2 cut(s)	2029, 2131
SfaNI	GCATC	9 cut(s)	386, 675, 1157, 1654, 2044, 3001, 3349, 3411, 3800
SfcI	CTRYAG	3 cut(s)	1329, 2637, 3196
Sfr274I	CTCGAG	1 cut(s)	3784
SfuI	TTCGAA	1 cut(s)	872
SinI	GGWCC	5 cut(s)	891, 1876, 2321, 2420, 2685
SlaI	CTCGAG	1 cut(s)	3784
SmiMI	CAYNNNNRTG	3 cut(s)	954, 1194, 2501
SmlI	CTYRAG	3 cut(s)	1630, 3056, 3784
SmoI	CTYRAG	3 cut(s)	1630, 3056, 3784
SnaBI	TACGTA	1 cut(s)	2174
SseBI	AGGCCT	3 cut(s)	1906, 2847, 3427
SsiI	CCGC	7 cut(s)	369, 735, 1011, 1134, 2354, 2399, 3671
SspI	AATATT	2 cut(s)	2156, 3037
StuI	AGGCCT	3 cut(s)	1906, 2847, 3427
StyI	CCWWGG	2 cut(s)	607, 1901
TaaI	ACNGT	8 cut(s)	145, 1271, 1998, 2050, 2503, 2689, 3200, 3226
TaiI	ACGT	6 cut(s)	72, 551, 1485, 2176, 2265, 2832
TatI	WGTACW	4 cut(s)	2240, 2332, 2454, 3555
TauI	GCSGC	3 cut(s)	372, 1137, 3674
TfiI	GAWTC	7 cut(s)	47, 392, 805, 1200, 1656, 1738, 3758
TscAI	CASTG	5 cut(s)	310, 1185, 1582, 2074, 3552
TseFI	GTSAC	7 cut(s)	970, 1478, 1525, 2611, 3133, 3175, 3740
TseI	GCWGC	6 cut(s)	93, 508, 1001, 1331, 1839, 1842
Tsp45I	GTSAC	7 cut(s)	970, 1478, 1525, 2611, 3133, 3175, 3740
TspGWI	ACGGA	5 cut(s)	1422, 1437, 1889, 1901, 2431
TspRI	CASTG	5 cut(s)	310, 1185, 1582, 2074, 3552
VpaK11BI	GGWCC	5 cut(s)	891, 1876, 2321, 2420, 2685
XbaI	TCTAGA	2 cut(s)	781, 2599
XceI	RCATGY	1 cut(s)	1526
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2019, 3004
XhoI	CTCGAG	1 cut(s)	3784
XmiI	GTMKAC	2 cut(s)	345, 3195
ZraI	GACGTC	1 cut(s)	1483
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.