Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009922

Physical Location & Seq

Genomic Coordinates Forward (+)

25136309 .. 25137017

Gene Structure 709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1184700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGTCTATGATGCAAAATTTCTACGCGTCCCCGAGGTACTCTGGCTTGGAGCCTTCCCTTCGGACTCAGACAAGTACGGTCTTCCACAACAGTGTCTCCTTCATTTGACGGTAGAAGACAAGAGGAAAACGGAGGCCATGCTACTTCGATGCTACTTACAGAATGAAGCGCCGCCAGTGGAGGTAAGACTCTGTAGATTGGAGCTACAGTTGATGCTGGAAAGAGGAGTGAAGTTTGAGTTAGAAGCGTTGTCTGTGCACGAACTTAACTATTTGTCGGAGGTGTACATACCATCTAAACTTCAAGGTGGAGTCCACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000724 GO:0000725 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

108

Amino Acids

12.37

Weight (kDa)

5.58

Isoelectric Point (pI)

57.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	1 - 101	5.4e-20	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13170 AT3G13170 AT3G13170
fragaria_vesca	FvH4_3g29420
malus_domestica	MD03G1184400.v1.1 MD03G1184700.v1.1
prunus_persica	Prupe.4G241800_v2.0.a1 Prupe.4G241800_v2.0.a1
pyrus_communis	pycom03g13780
rosa_chinensis	RchiOBHm_Chr5g0053841
rosa_laevigata	RLG00000034906
rosa_multiflora	Rmu_sc0007356.1_g000010
rosa_roxburghii	Rroxscaffold_1G00026760
rosa_rugosa	Rorug05G0283600 Rorug05G0283700
rosa_samantha	Rh5AG353400 Rh5BG365000 Rh5CG390100 Rh5DG380000
rosa_wichuraiana	Rw0G002140 Rw0G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	27
AciI	CCGC	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	17
AfaI	GTAC	3 cut(s)	39, 77, 287
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	305
AleI	CACNNNNGTG	1 cut(s)	91
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	1 cut(s)	135
ApaLI	GTGCAC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	172
AvaI	CYCGRG	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	261
BbsI	GAAGAC	2 cut(s)	74, 123
Bbv12I	GWGCWC	1 cut(s)	261
BccI	CCATC	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	101
BfmI	CTRYAG	2 cut(s)	193, 206
BfoI	RGCGCY	1 cut(s)	173
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	52
BmsI	GCATC	2 cut(s)	140, 204
BpiI	GAAGAC	2 cut(s)	74, 123
BsaJI	CCNNGG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 194, 224
Bse1I	ACTGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	240
BseSI	GKGCMC	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp1407I	TGTACA	1 cut(s)	285
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	80
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	52
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	33
Bst4CI	ACNGT	4 cut(s)	80, 93, 112, 210
BstAUI	TGTACA	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	101
BstSFI	CTRYAG	2 cut(s)	193, 206
BstSLI	GKGCMC	1 cut(s)	261
BstUI	CGCG	1 cut(s)	27
BstV2I	GAAGAC	2 cut(s)	74, 123
BsuRI	GGCC	1 cut(s)	137
BtsIMutI	CAGTG	2 cut(s)	98, 183
CfoI	GCGC	1 cut(s)	172
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	3 cut(s)	38, 76, 286
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	4 cut(s)	46, 53, 137, 205
CviKI_1	RGCY	4 cut(s)	46, 53, 137, 205
CviQI	GTAC	3 cut(s)	38, 76, 286
DdeI	CTNAG	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	32
FaeI	CATG	1 cut(s)	142
FaiI	YATR	3 cut(s)	9, 140, 290
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	173
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	137
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	3 cut(s)	65, 189, 312
Hpy166II	GTNNAC	3 cut(s)	259, 286, 316
Hpy188I	TCNGA	3 cut(s)	64, 70, 280
Hpy8I	GTNNAC	3 cut(s)	259, 286, 316
HpyAV	CCTTC	3 cut(s)	64, 69, 110
HpyCH4III	ACNGT	4 cut(s)	80, 93, 112, 210
HpyCH4V	TGCA	2 cut(s)	14, 259
HpyF3I	CTNAG	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	170
LmnI	GCTCC	2 cut(s)	50, 202
LpnPI	CCDG	3 cut(s)	28, 189, 203
LweI	GCATC	2 cut(s)	140, 204
MboII	GAAGA	2 cut(s)	74, 128
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	1 cut(s)	17
MluI	ACGCGT	1 cut(s)	25
MlyI	GAGTC	3 cut(s)	59, 183, 321
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	6 cut(s)	28, 117, 127, 175, 218, 274
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	91
MvnI	CGCG	1 cut(s)	27
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	1 cut(s)	52
OliI	CACNNNNGTG	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	174
PleI	GAGTC	3 cut(s)	59, 183, 320
PpsI	GAGTC	3 cut(s)	59, 183, 320
PspN4I	GGNNCC	1 cut(s)	52
RsaI	GTAC	3 cut(s)	39, 77, 287
RsaNI	GTAC	3 cut(s)	38, 76, 286
RseI	CAYNNNNRTG	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	173
SchI	GAGTC	3 cut(s)	59, 183, 321
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	5 cut(s)	39, 186, 207, 285, 310
SfaNI	GCATC	2 cut(s)	140, 204
SfcI	CTRYAG	2 cut(s)	193, 206
SmiMI	CAYNNNNRTG	1 cut(s)	91
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	1 cut(s)	173
TaaI	ACNGT	4 cut(s)	80, 93, 112, 210
TaqI	TCGA	1 cut(s)	148
TasI	AATT	1 cut(s)	17
TatI	WGTACW	1 cut(s)	285
TauI	GCSGC	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	2 cut(s)	98, 183
TspDTI	ATGAA	2 cut(s)	92, 180
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	2 cut(s)	98, 183
VneI	GTGCAC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.