Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011957

Physical Location & Seq

Genomic Coordinates Forward (+)

22817056 .. 22817657

Gene Structure 602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGGAAAGAAGAACAAAAATGAGCAAGAAGAAGCTAAAGTAGTTGTTGCAGAATTCAAAGTCTCAATGCATTGCAATGCATGTGAAAGAATAGTGGCCAAAACCCTACTAAAAATTAAAGGGGTGGAGAAGTTTGGAACAGACATGAACAACCACAAGGTTGTCGTAACAGGGAAGATTGACCCAGAAAAGATTTTGAAGAAATTGAGGAAAAAGACGGGGAAGAGAGTAGAGATCATTGATGACAAGGAAGAAGAACAAAATGCTGAGTCTGATGAAGGAAACTTATCAAGACCATTGATTGTTCATCCACTCATGTTTGATTGCTGCAAAGAGAGTGATCAGTTACTTTTGATGTTCAGTGATGAGAATCCAAATGCTTGTTCCATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

132

Amino Acids

14.86

Weight (kDa)

6.83

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	19 - 75	8.3e-14	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21490
fragaria_vesca	FvH4_3g29750 FvH4_4g16960 FvH4_4g16960 FvH4_4g16960 FvH4_4g16960
malus_domestica	MD16G1177100.v1.1
prunus_persica	Prupe.1G144000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0420551
rosa_laevigata	RLG00000007752
rosa_multiflora	Rmu_sc0002248.1_g000057
rosa_roxburghii	Rroxscaffold_5G00363170
rosa_rugosa	Rorug04G0164800 Rorug04G0164900 Rorug04G0165000
rosa_samantha	Rh4AG226400 Rh4CG241200 Rh4DG224700
rosa_wichuraiana	Rw4G019550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	58, 199
AjuI	GAANNNNNNNTTGG	1 cut(s)	367
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	327
ApoI	RAATTY	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	314
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	67
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	369
Bse3DI	GCAATG	2 cut(s)	70, 82
Bse8I	GATNNNNATC	1 cut(s)	369
BseGI	GGATG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	369
BseMI	GCAATG	2 cut(s)	70, 82
BseMII	CTCAG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	314
BshFI	GGCC	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	234, 340
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	259
BsrDI	GCAATG	2 cut(s)	70, 82
BssMI	GATC	2 cut(s)	234, 340
Bst6I	CTCTTC	1 cut(s)	218
BstDEI	CTNAG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	2 cut(s)	237, 343
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	2 cut(s)	234, 340
BstNSI	RCATGY	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	367
CviAII	CATG	3 cut(s)	81, 145, 316
CviJI	RGCY	2 cut(s)	35, 98
CviKI_1	RGCY	2 cut(s)	35, 98
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	2 cut(s)	236, 342
DpnII	GATC	2 cut(s)	234, 340
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	53
EcoT22I	ATGCAT	2 cut(s)	72, 82
FaeI	CATG	3 cut(s)	84, 148, 319
FaiI	YATR	4 cut(s)	82, 146, 317, 389
FatI	CATG	3 cut(s)	80, 144, 315
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	1 cut(s)	328
FokI	GGATG	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	328
GluI	GCNGC	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	98
Hin1II	CATG	3 cut(s)	84, 148, 319
HinfI	GANTC	2 cut(s)	269, 370
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	272
HpyCH4V	TGCA	5 cut(s)	50, 70, 75, 80, 330
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	3 cut(s)	84, 148, 319
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	234, 340
LpnPI	CCDG	2 cut(s)	156, 198
Lsp1109I	GCAGC	1 cut(s)	314
MaeIII	GTNAC	2 cut(s)	166, 345
MalI	GATC	2 cut(s)	236, 342
MboI	GATC	2 cut(s)	234, 340
MboII	GAAGA	7 cut(s)	22, 41, 187, 211, 235, 263, 266
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	3 cut(s)	53, 114, 203
MluNI	TGGCCA	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	1 cut(s)	201
Mox20I	TGGCCA	1 cut(s)	98
Mph1103I	ATGCAT	2 cut(s)	72, 82
MscI	TGGCCA	1 cut(s)	98
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	75
Msp20I	TGGCCA	1 cut(s)	98
NdeII	GATC	2 cut(s)	234, 340
NlaIII	CATG	3 cut(s)	84, 148, 319
NsiI	ATGCAT	2 cut(s)	72, 82
NspI	RCATGY	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	370
PkrI	GCNGC	1 cut(s)	329
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	2 cut(s)	234, 340
SchI	GAGTC	1 cut(s)	278
SetI	ASST	2 cut(s)	37, 162
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse9I	AATT	3 cut(s)	53, 114, 203
TasI	AATT	3 cut(s)	53, 114, 203
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	1 cut(s)	327
TspDTI	ATGAA	3 cut(s)	161, 291, 296
TspRI	CASTG	1 cut(s)	367
XapI	RAATTY	1 cut(s)	53
XceI	RCATGY	1 cut(s)	84
Zsp2I	ATGCAT	2 cut(s)	72, 82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.