Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000901

Physical Location & Seq

Genomic Coordinates Forward (+)

28866996 .. 28869369

Gene Structure 2374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0164800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGTCCCGTACATGCTATTCGGTAAGGTTGGGGTTGGCTTCATCCGTGGAACACAAGTATTTAATTACCAGCACAAGCGTACTCTGGTGAATATTAGATTGAAATGGGTTAAAGATAGGGCACTGGATGCTGTTGTGACTGCTGAGAGGGATCTCAAAGCTGCCTGTGTTCTTGTTTCCATAATCTCCTCCTCGTCTGATGGCTGCCTCCCCATATACCATCTCACTTGTCATCGTGGACAACTCGATCTTCCTTATGACCTCAAGGTCTCTACTTTTATTAGGAGATACCCATCTGTTTTTCTAGAGTCCCATGTTCTTGATAGTGGTGGCACTCGTGTCCCATGTTTTAGCTTAACTCCTGAAGCCATAAAACTCCACCAAGAAGAGTCCAATGTCGTCCAGCAGAATCAGAGTGATATCCTTAATAGGCTTCGCAAACTGCTCATGCTCACTAGGGGCTGGAAGCTTCCTTTACAAACCATTGACCAGCTGAAATGGGACCTAGGTTTGCCATATGATTACCAGCATTCAGTTATTTCACATCACCCTGATCTATTCTCTTTCATCAGCTTACCTGATGACCGTGTTGGCTTAAAGCTCTTATCCTGGGATGATGACCTTTCTGTCTCCCAGTTGCAAAAGAATTCTGCCATACAACAAGAGGAAGAAGATGTGAGAAGTGGCTGTTTAGCTTTTCCAATTGGGTTTACTAGGGGTTTTGGATTGAAGAGAAAATGCATGGAGTGGTTGAAAGAGTGGCAAAGCCTCCCTTATAATTCTCCGTACTGTGATGCCTCCCATTTAGATCCTCGTACAGATGAATCAGAGAAGAGGATTGTTGGAGTCTTCCATGAGCTTCTTCATCTCACTATGCAAAAGAAAACTGAACGTAAGAATGTGAGCAACCTTCGTAAACCTTTGGCCCTACCCCAGAAGTTCACTAAAGTGTTTGAGCGTCATCCAGAAACACCCTATTGCAGAACTGAGAGAAAAATTTGCAATGCTGTTGAGGAAAGGTTTGCTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

343

Amino Acids

39.58

Weight (kDa)

8.86

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PORR	PF11955	37 - 335	7.7e-99	Plant organelle RNA recognition domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21500 AT3G21500 AT3G21500 AT4G15560
fragaria_vesca	FvH4_1g19340 FvH4_1g19340 FvH4_1g19340 FvH4_1g19340 FvH4_4g16950 FvH4_4g16950 FvH4_4g16950
malus_domestica	MD01G1041300.v1.1 MD13G1175400.v1.1 MD15G1309900.v1.1 MD16G1177200.v1.1
prunus_persica	Prupe.1G144100_v2.0.a1 Prupe.1G144100_v2.0.a1 Prupe.1G144100_v2.0.a1 Prupe.1G472400_v2.0.a1 Prupe.1G472400_v2.0.a1 Prupe.6G204700_v2.0.a1
pyrus_communis	pycom01g06900 pycom01g06910 pycom04g12340 pycom13g15130 pycom15g10740 pycom15g27390 pycom16g14880
rosa_chinensis	RchiOBHm_Chr2g0110711 RchiOBHm_Chr4g0403671 RchiOBHm_Chr4g0403701 RchiOBHm_Chr4g0420531
rosa_laevigata	RLG00000007753 RLG00000008956 RLG00000008960 RLG00000017835
rosa_multiflora	Rmu_co8068784.1_g000001 Rmu_sc0000389.1_g000047 Rmu_sc0001496.1_g000014 Rmu_sc0002248.1_g000052 Rmu_sc0004115.1_g000015
rosa_roxburghii	Rroxscaffold_2G00133000 Rroxscaffold_5G00348270 Rroxscaffold_5G00348360 Rroxscaffold_5G00363150
rosa_rugosa	Rorug02G0169200 Rorug04G0045300 Rorug04G0164800
rosa_samantha	Rh2BG231400 Rh2CG223700 Rh2DG227600 Rh4AG120600 Rh4AG120700 Rh4BG113400 Rh4BG113500 Rh4BG113700 Rh4BG113800 Rh4BG229100 Rh4CG129000 Rh4DG112700 Rh4DG113600
rosa_wichuraiana	Rw2G017080 Rw4G009750 Rw4G009820 Rw4G019540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	777
AasI	GACNNNNNNGTC	2 cut(s)	266, 626
AclWI	GGATC	2 cut(s)	159, 803
AcsI	RAATTY	2 cut(s)	646, 996
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	4 cut(s)	11, 82, 788, 817
AgsI	TTSAA	3 cut(s)	103, 730, 754
AjnI	CCWGG	1 cut(s)	608
AleI	CACNNNNGTG	1 cut(s)	947
AluBI	AGCT	8 cut(s)	161, 354, 469, 493, 573, 601, 695, 859
AluI	AGCT	8 cut(s)	161, 354, 469, 493, 573, 601, 695, 859
Alw26I	GTCTC	2 cut(s)	274, 634
AlwI	GGATC	2 cut(s)	159, 803
AoxI	GGCC	1 cut(s)	924
ApeKI	GCWGC	2 cut(s)	161, 204
ApoI	RAATTY	2 cut(s)	646, 996
AspA2I	CCTAGG	1 cut(s)	505
AspS9I	GGNCC	3 cut(s)	4, 502, 925
AsuHPI	GGTGA	2 cut(s)	100, 539
AvaII	GGWCC	2 cut(s)	4, 502
AvrII	CCTAGG	1 cut(s)	505
BaeGI	GKGCMC	1 cut(s)	124
BauI	CACGAG	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	841
BbvI	GCAGC	2 cut(s)	148, 191
BccI	CCATC	3 cut(s)	194, 228, 301
BciT130I	CCWGG	1 cut(s)	610
BcoDI	GTCTC	2 cut(s)	274, 634
BfaI	CTAG	4 cut(s)	305, 456, 506, 714
BisI	GCNGC	2 cut(s)	162, 205
BlnI	CCTAGG	1 cut(s)	505
BlsI	GCNGC	2 cut(s)	163, 206
Bme1390I	CCNGG	1 cut(s)	610
Bme18I	GGWCC	2 cut(s)	4, 502
BmgT120I	GGNCC	3 cut(s)	4, 502, 925
BmiI	GGNNCC	2 cut(s)	6, 503
BmrFI	CCNGG	1 cut(s)	610
BmrI	ACTGGG	1 cut(s)	628
BmsI	GCATC	2 cut(s)	118, 784
BmuI	ACTGGG	1 cut(s)	628
BpiI	GAAGAC	1 cut(s)	841
BpuEI	CTTGAG	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	292
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	3 cut(s)	46, 505, 609
Bse1I	ACTGG	2 cut(s)	129, 634
Bse3DI	GCAATG	1 cut(s)	1009
Bse8I	GATNNNNATC	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	610
BseDI	CCNNGG	3 cut(s)	46, 505, 609
BseGI	GGATG	4 cut(s)	42, 133, 619, 961
BseJI	GATNNNNATC	1 cut(s)	292
BseMI	GCAATG	1 cut(s)	1009
BseMII	CTCAG	2 cut(s)	135, 978
BseNI	ACTGG	2 cut(s)	129, 634
BseRI	GAGGAG	2 cut(s)	178, 181
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	148, 191
BshFI	GGCC	1 cut(s)	926
BslFI	GGGAC	3 cut(s)	295, 326, 515
BsmAI	GTCTC	2 cut(s)	274, 634
BsmFI	GGGAC	3 cut(s)	295, 326, 515
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	1 cut(s)	926
Bso31I	GGTCTC	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	4 cut(s)	151, 247, 553, 808
BspANI	GGCC	1 cut(s)	926
BspCNI	CTCAG	2 cut(s)	136, 979
BspLI	GGNNCC	2 cut(s)	6, 503
BspPI	GGATC	2 cut(s)	159, 803
BspTNI	GGTCTC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	1009
BsrI	ACTGG	2 cut(s)	129, 634
BssECI	CCNNGG	3 cut(s)	46, 505, 609
BssMI	GATC	4 cut(s)	151, 247, 553, 808
BssSI	CACGAG	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	505
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	610
Bst4CI	ACNGT	2 cut(s)	587, 791
Bst6I	CTCTTC	3 cut(s)	381, 725, 827
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	144, 987
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	4 cut(s)	42, 133, 619, 961
BstKTI	GATC	4 cut(s)	154, 250, 556, 811
BstMAI	GTCTC	2 cut(s)	274, 634
BstMBI	GATC	4 cut(s)	151, 247, 553, 808
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	610
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	608
BstSLI	GKGCMC	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	148, 191
BstV2I	GAAGAC	1 cut(s)	841
BstX2I	RGATCY	2 cut(s)	151, 808
BstYI	RGATCY	2 cut(s)	151, 808
BsuRI	GGCC	1 cut(s)	926
BtgI	CCRYGG	1 cut(s)	46
BtsCI	GGATG	4 cut(s)	42, 133, 619, 961
BtsIMutI	CAGTG	1 cut(s)	122
Cfr13I	GGNCC	3 cut(s)	4, 502, 925
CseI	GACGC	1 cut(s)	947
Csp6I	GTAC	4 cut(s)	10, 81, 787, 816
CviAII	CATG	6 cut(s)	13, 314, 345, 448, 742, 854
CviQI	GTAC	4 cut(s)	10, 81, 787, 816
DdeI	CTNAG	2 cut(s)	144, 987
DpnI	GATC	4 cut(s)	153, 249, 555, 810
DpnII	GATC	4 cut(s)	151, 247, 553, 808
DrdI	GACNNNNNNGTC	2 cut(s)	266, 626
DseDI	GACNNNNNNGTC	2 cut(s)	266, 626
Eam1104I	CTCTTC	3 cut(s)	381, 725, 827
EarI	CTCTTC	3 cut(s)	381, 725, 827
Eco130I	CCWWGG	1 cut(s)	505
Eco31I	GGTCTC	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	2 cut(s)	4, 502
Eco57I	CTGAAG	1 cut(s)	384
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRI	GAATTC	1 cut(s)	646
EcoRII	CCWGG	1 cut(s)	608
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	505
EcoT22I	ATGCAT	1 cut(s)	743
ErhI	CCWWGG	1 cut(s)	505
FaeI	CATG	6 cut(s)	16, 317, 348, 451, 745, 857
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FaqI	GGGAC	3 cut(s)	295, 326, 515
FatI	CATG	6 cut(s)	12, 313, 344, 447, 741, 853
FauNDI	CATATG	1 cut(s)	517
Fnu4HI	GCNGC	2 cut(s)	162, 205
FokI	GGATG	4 cut(s)	29, 140, 626, 948
Fsp4HI	GCNGC	2 cut(s)	162, 205
FspBI	CTAG	4 cut(s)	305, 456, 506, 714
GluI	GCNGC	2 cut(s)	162, 205
HaeIII	GGCC	1 cut(s)	926
HgaI	GACGC	1 cut(s)	947
Hin1II	CATG	6 cut(s)	16, 317, 348, 451, 745, 857
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	5 cut(s)	308, 389, 409, 824, 846
HphI	GGTGA	2 cut(s)	100, 539
Hpy166II	GTNNAC	4 cut(s)	239, 711, 917, 942
Hpy188I	TCNGA	3 cut(s)	199, 414, 829
Hpy188III	TCNNGA	4 cut(s)	305, 320, 362, 965
Hpy8I	GTNNAC	4 cut(s)	239, 711, 917, 942
HpyAV	CCTTC	1 cut(s)	920
HpyCH4III	ACNGT	2 cut(s)	587, 791
HpyCH4IV	ACGT	1 cut(s)	892
HpyCH4V	TGCA	5 cut(s)	640, 741, 877, 981, 1002
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	144, 987
HpySE526I	ACGT	1 cut(s)	892
Hsp92II	CATG	6 cut(s)	16, 317, 348, 451, 745, 857
Kzo9I	GATC	4 cut(s)	151, 247, 553, 808
Lsp1109I	GCAGC	2 cut(s)	148, 191
LweI	GCATC	2 cut(s)	118, 784
MaeI	CTAG	4 cut(s)	305, 456, 506, 714
MaeII	ACGT	1 cut(s)	892
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	4 cut(s)	153, 249, 555, 810
MboI	GATC	4 cut(s)	151, 247, 553, 808
MboII	GAAGA	8 cut(s)	242, 398, 680, 683, 742, 841, 844, 854
MfeI	CAATTG	1 cut(s)	702
MflI	RGATCY	2 cut(s)	151, 808
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	5 cut(s)	64, 646, 702, 778, 996
MlyI	GAGTC	3 cut(s)	317, 398, 855
MmeI	TCCRAC	1 cut(s)	823
Mph1103I	ATGCAT	1 cut(s)	743
MseI	TTAA	5 cut(s)	63, 111, 356, 426, 596
MslI	CAYNNNNRTG	1 cut(s)	947
MspA1I	CMGCKG	1 cut(s)	493
MspR9I	CCNGG	1 cut(s)	610
MunI	CAATTG	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	610
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	4 cut(s)	151, 247, 553, 808
NlaIII	CATG	6 cut(s)	16, 317, 348, 451, 745, 857
NlaIV	GGNNCC	2 cut(s)	6, 503
NmuCI	GTSAC	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	743
NspI	RCATGY	1 cut(s)	16
OliI	CACNNNNGTG	1 cut(s)	947
PctI	GAATGC	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	409, 824
PkrI	GCNGC	2 cut(s)	163, 206
PleI	GAGTC	3 cut(s)	316, 397, 854
PpsI	GAGTC	3 cut(s)	316, 397, 854
PpuMI	RGGWCCY	1 cut(s)	502
PsiI	TTATAA	1 cut(s)	777
Psp5II	RGGWCCY	1 cut(s)	502
Psp6I	CCWGG	1 cut(s)	608
PspGI	CCWGG	1 cut(s)	608
PspN4I	GGNNCC	2 cut(s)	6, 503
PspPI	GGNCC	3 cut(s)	4, 502, 925
PspPPI	RGGWCCY	1 cut(s)	502
PsuI	RGATCY	2 cut(s)	151, 808
PvuII	CAGCTG	1 cut(s)	493
RsaI	GTAC	4 cut(s)	11, 82, 788, 817
RsaNI	GTAC	4 cut(s)	10, 81, 787, 816
RseI	CAYNNNNRTG	1 cut(s)	947
SaqAI	TTAA	5 cut(s)	63, 111, 356, 426, 596
SatI	GCNGC	2 cut(s)	162, 205
Sau3AI	GATC	4 cut(s)	151, 247, 553, 808
Sau96I	GGNCC	3 cut(s)	4, 502, 925
SchI	GAGTC	3 cut(s)	317, 398, 855
ScrFI	CCNGG	1 cut(s)	610
SduI	GDGCHC	1 cut(s)	124
SfaNI	GCATC	2 cut(s)	118, 784
SinI	GGWCC	2 cut(s)	4, 502
SmiMI	CAYNNNNRTG	1 cut(s)	947
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	5 cut(s)	64, 646, 702, 778, 996
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	4 cut(s)	305, 456, 506, 714
StyD4I	CCNGG	1 cut(s)	608
StyI	CCWWGG	1 cut(s)	505
TaaI	ACNGT	2 cut(s)	587, 791
TaiI	ACGT	1 cut(s)	895
TaqI	TCGA	1 cut(s)	246
TasI	AATT	5 cut(s)	64, 646, 702, 778, 996
TfiI	GAWTC	2 cut(s)	409, 824
Tru1I	TTAA	5 cut(s)	63, 111, 356, 426, 596
Tru9I	TTAA	5 cut(s)	63, 111, 356, 426, 596
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	2 cut(s)	161, 204
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	4 cut(s)	31, 556, 837, 854
TspGWI	ACGGA	2 cut(s)	35, 774
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	2 cut(s)	4, 502
XapI	RAATTY	2 cut(s)	646, 996
XbaI	TCTAGA	1 cut(s)	304
XceI	RCATGY	1 cut(s)	16
XmaJI	CCTAGG	1 cut(s)	505
XspI	CTAG	4 cut(s)	305, 456, 506, 714
Zsp2I	ATGCAT	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.