Rh4BG113700

cla,cla1,def,dxps2,dxs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000901
Physical Location & Seq
Forward (+)
19237844 .. 19238062
219 bp
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UTR
Exon/CDS
Intron
Rh4BG113700.1

Sequence Viewer

Length: 219 bp
ATGGCTCATGATGTAGACTTACAAAAGCTCCCGGTGAGATTTGCTATAGACAAGGCTAGTTTTGTCGGTGCAGATGGTCCACCACATTGGGGAGCCTTTGATACAACTTTCATGGCTTGTTTACCTAACATGGTGGTCATGGCCCCTTCTTCTGAGACTGAACTTAGGTACTTGGCTGCCACGGCTTCTGCCATAGATGATAGGCCTAGTTGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00730 ko00900 ko01100 ko01110 ko01130 map00730 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
DXP_synthase_N Transket_pyr Transketolase_C

Protein Analysis

72

Amino Acids

7.8

Weight (kDa)

4.69

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transket_pyr PF02779 2 - 72 7.4e-13 Transketolase, pyrimidine binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 15
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 89
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 149
AoxI GGCC 2 cut(s) 141, 203
ApeKI GCWGC 1 cut(s) 176
AspS9I GGNCC 2 cut(s) 77, 142
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 163
BccI CCATC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 198
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 2 cut(s) 57, 207
BfmI CTRYAG 1 cut(s) 45
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 77, 142
BmiI GGNNCC 2 cut(s) 94, 144
BmrFI CCNGG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 163
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 2 cut(s) 143, 205
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 2 cut(s) 143, 205
BspANI GGCC 2 cut(s) 143, 205
BspCNI CTCAG 1 cut(s) 145
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 94, 144
BssECI CCNNGG 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 153, 164
BstDSI CCRYGG 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 87
BsuRI GGCC 2 cut(s) 143, 205
BtgI CCRYGG 1 cut(s) 180
CciI TCATGA 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 77, 142
Csp6I GTAC 1 cut(s) 169
CviAII CATG 4 cut(s) 8, 112, 130, 139
CviJI RGCY 9 cut(s) 5, 28, 56, 95, 116, 143, 176, 185, 205
CviKI_1 RGCY 9 cut(s) 5, 28, 56, 95, 116, 143, 176, 185, 205
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 153, 164
Eco147I AGGCCT 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 77
FaeI CATG 4 cut(s) 11, 115, 133, 142
FaiI YATR 6 cut(s) 9, 47, 113, 131, 140, 194
FatI CATG 4 cut(s) 7, 111, 129, 138
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 2 cut(s) 57, 207
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 2 cut(s) 143, 205
HapII CCGG 1 cut(s) 32
Hin1II CATG 4 cut(s) 11, 115, 133, 142
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 3 cut(s) 16, 80, 122
Hpy188I TCNGA 2 cut(s) 154, 218
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 3 cut(s) 16, 80, 122
HpyAV CCTTC 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 153, 164
Hsp92II CATG 4 cut(s) 11, 115, 133, 142
LmnI GCTCC 2 cut(s) 33, 92
LpnPI CCDG 1 cut(s) 45
Lsp1109I GCAGC 1 cut(s) 163
MaeI CTAG 2 cut(s) 57, 207
MboII GAAGA 1 cut(s) 141
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 1 cut(s) 32
NlaIII CATG 4 cut(s) 11, 115, 133, 142
NlaIV GGNNCC 2 cut(s) 94, 144
PagI TCATGA 1 cut(s) 7
PceI AGGCCT 1 cut(s) 205
PkrI GCNGC 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 94, 144
PspPI GGNCC 2 cut(s) 77, 142
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SatI GCNGC 1 cut(s) 177
Sau96I GGNCC 2 cut(s) 77, 142
ScrFI CCNGG 1 cut(s) 32
SetI ASST 3 cut(s) 30, 127, 170
SfcI CTRYAG 1 cut(s) 45
SinI GGWCC 1 cut(s) 77
SseBI AGGCCT 1 cut(s) 205
SspMI CTAG 2 cut(s) 57, 207
StuI AGGCCT 1 cut(s) 205
StyD4I CCNGG 1 cut(s) 30
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 2 cut(s) 57, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.