FvH4_4g16950

1-deoxy-D-xylulose-5-phosphate synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000901
Physical Location & Seq
Forward (+)
20882127 .. 20887477
5351 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16950.t3

Sequence Viewer

Length: 2148 bp
ATGGCTCTCAGCACATTCTCAATCTCAACTCAGAAACCCACCTCTAAGTTCTCATCCCATTTCTCTTTTGGACCAGCTCTGCCATGCCCTCAACAACAAAAGCTCTTCAATCAGGTAAAGAAAAGGACAACTGGGATATGTGCTTCACTGTCGGAGAGTGGAGAGTATCACTCACAAAGACCACCCACTCCTCTCTTGGACACTATCAACTATCCAATTCACATGAAAAACCTTTCTGTCAAGGAGCTTAAACAATTAGCTGATGAGCTGAGGTCTGATGTCATCTTCAACGTTTCAAAAACGGGAGGTCACCTAGGATCAAGCCTTGGTGTTGTGGAGCTCACTGTGGCTCTCCACTATGTGTTCAATGCTCCTCAGGATAAGATTCTGTGGGATGTTGGTCATCAGTCTTACCCACACAAAATCTTGACTGGGAGAAGAGATAAGATGCAGACTATGAGGCAGACCAATGGGTTAGCTGGTTTCACAAAACGGTCGGAGAGCGAGTATGATTGCTTTGGCACTGGTCATAGTTCTACTACTATCTCTGCTGGCTTGGGAATGGCCGTTGGGAGGGATCTAAAGGGAAAAAACAATCATGTGGTGGCTGTTATTGGTGATGGTGCCATGACAGCAGGGCAAGCTTATGAAGCGATGAACAATGCGGGTTACCTTGATTCTGACATGATAATTATTCTCAACGATAATAAACAGGTTTCTTTACCTACTGCCAATCTCGATGGACCCATACCTCCAGTAGGAGCTTTAAGCAGCGCTCTGAGTAAGTTGCAGTCAAACAGGCCTCTTAGAGAATTAAGAGAGGTTGCCAAAGGAGTTACCAAACAAATTGGTGGTTCTGTGCATGAACTGGCAGCAAAAGTTGATGAGTATGCTCGTGGAATGATCAGTGGCTCTGGCTCAACCCTGTTTGAAGAGCTGGGACTATATTATATTGGTCCAGTCGATGGTCACAATGTGGATGATCTGATAGCGATTTTGCAGGAGGTTAAAACAACACAAACAACCGGTCCTGTCCTGATCCACCTGATCACGGAGAAAGGTCGAGGTTATCCATATGCGGAGAAGGCTGCAGACAAGTACCATGGAGTGGCCAAGTTTGATCCCGCAACTGGAAAGCAGTTCAAAGCTGCTGCTAGCACACAGTCCTACACAACATACTTTGCAGAGGCTTTGATTGCAGAAGCCGAAGCAGACAAAGATATTGTAGCAATCCATGCTGCAATGGGAGGTGGAACAGGCATGAATCTCTTCCTCCGCCGTTTTCCAACAAGATGCTTTGATGTCGGAATAGCAGAACAGCATGCTGTTACATTTGCCGCAGGTCTTGCCTGTGAAGGCCTGAAACCTTTCTGTGCAATTTACTCATCTTTCTTGCAGAGGGCTTATGACCAGGTCGTACATGATGTGGATTTGCAGAAACTGCCTGTGAGATTTGCTATGGATAGAGCTGGGCTTGTTGGAGCCGATGGTCCCACACATTGTGGGGCTTTTGATGTTACTTTTATGGCATGCCTCCCTAACATGGTGGTCATGGCTCCTTCTGATGAGGCAGAGCTCTTTCATATGGTAGCCACTGCTGCTGCCATTGATGATCGTCCAAGTTGTTTCCGGTACCCAAGAGGAAATGGGATTGGTGTAGAGCTGCCGGCAGGAAATAAAGGCACTCCTCTTGAGATAGGAAAAGGAAGAATATTGATTGAAGGAGAAAGAGTTGCACTCTTGGGCTATGGATCAGCCGTCCAGACATGTTTGGCTGCAGCAACTTTGGTGGAACCTCTTGGCTTGAGTCTGACGGTTGCTGATGCACGATTTTGCAAACCGCTAGATCATGCTCTTATCCGCAAACTTGCAAAATCGCATGAGTTTTTGATTACTGTGGAAGAAGGATCCATTGGAGGCTTTGGTTCTCATGTTGTCCAGTTCCTGGCTCTTGACGGCCTTCTTGATGGGAACCTGAAGTGGAGACCTCTGGTTCTTCCTGATCGGTACATTGACCACGGTGCCCCAGCCGATCAGTTGGCCGATGCCGGCCTCACTCCTTCCCATATTGCAGCAACAGTACTCAATATGCTTGGACAAACAAGAGAGGCACTGCAGAGACCTGGCATCGACAATATGGTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00730 ko00900 ko01100 ko01110 ko01130 map00730 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
DXP_synthase_N Transket_pyr Transketolase_C

Protein Analysis

716

Amino Acids

76.75

Weight (kDa)

6.3

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DXP_synthase_N PF13292 66 - 336 5.1e-92 1-deoxy-D-xylulose-5-phosphate synthase
Transket_pyr PF02779 373 - 534 2.3e-50 Transketolase, pyrimidine binding domain
Transketolase_C PF02780 552 - 675 2.1e-29 Transketolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1331
Acc65I GGTACC 1 cut(s) 1632
AccB1I GGYRCC 3 cut(s) 623, 1632, 2021
AccB7I CCANNNNNTGG 3 cut(s) 965, 1108, 1945
AciI CCGC 7 cut(s) 665, 1079, 1125, 1276, 1338, 1841, 1861
AclI AACGTT 1 cut(s) 291
AclWI GGATC 7 cut(s) 325, 585, 1033, 1115, 1759, 1902, 1915
AcoI YGGCCR 3 cut(s) 564, 1110, 2040
AcuI CTGAAG 1 cut(s) 1997
AdeI CACNNNGTG 3 cut(s) 361, 976, 1502
AfaI GTAC 5 cut(s) 1100, 1419, 1634, 2009, 2082
AfeI AGCGCT 1 cut(s) 775
AfiI CCNNNNNNNGG 8 cut(s) 573, 758, 965, 1051, 1108, 1130, 1543, 1945
AflIII ACRYGT 1 cut(s) 1766
AgeI ACCGGT 1 cut(s) 1025
AgsI TTSAA 7 cut(s) 109, 289, 297, 367, 932, 1144, 1721
AjnI CCWGG 3 cut(s) 1410, 1944, 2122
AjuI GAANNNNNNNTTGG 2 cut(s) 1896, 1928
Alw21I GWGCWC 2 cut(s) 342, 1578
Alw26I GTCTC 2 cut(s) 1978, 2113
AlwI GGATC 7 cut(s) 325, 585, 1033, 1115, 1759, 1902, 1915
AlwNI CAGNNNCTG 2 cut(s) 1441, 1945
Aor51HI AGCGCT 1 cut(s) 775
AoxI GGCC 7 cut(s) 564, 800, 1110, 1357, 1957, 2040, 2050
ArsI GACNNNNNNTTYG 2 cut(s) 1012, 1044
AsiGI ACCGGT 1 cut(s) 1025
Asp700I GAANNNNTTC 2 cut(s) 1268, 1367
Asp718I GGTACC 1 cut(s) 1632
AspA2I CCTAGG 1 cut(s) 313
AspLEI GCGC 1 cut(s) 776
AspS9I GGNCC 5 cut(s) 71, 743, 956, 1028, 1490
AsuHPI GGTGA 2 cut(s) 302, 629
AsuNHI GCTAGC 1 cut(s) 1154
AvaII GGWCC 5 cut(s) 71, 743, 956, 1028, 1490
AvrII CCTAGG 1 cut(s) 313
AxyI CCTNAGG 1 cut(s) 375
BaeGI GKGCMC 1 cut(s) 2026
BalI TGGCCA 1 cut(s) 1112
BamHI GGATCC 1 cut(s) 1907
BanI GGYRCC 3 cut(s) 623, 1632, 2021
BanII GRGCYC 2 cut(s) 342, 1578
BauI CACGAG 1 cut(s) 894
Bbv12I GWGCWC 2 cut(s) 342, 1578
BbvCI CCTCAGC 1 cut(s) 269
BccI CCATC 5 cut(s) 614, 734, 959, 1481, 1961
BceAI ACGGC 4 cut(s) 551, 1263, 1742, 1972
BciT130I CCWGG 3 cut(s) 1412, 1946, 2124
BclI TGATCA 2 cut(s) 903, 1047
BcoDI GTCTC 2 cut(s) 1978, 2113
BfaI CTAG 3 cut(s) 314, 1155, 1844
BfmI CTRYAG 3 cut(s) 1089, 1776, 2114
BfoI RGCGCY 1 cut(s) 777
BfuAI ACCTGC 1 cut(s) 1331
BlnI CCTAGG 1 cut(s) 313
BmcAI AGTACT 1 cut(s) 2082
Bme1390I CCNGG 3 cut(s) 1412, 1946, 2124
Bme18I GGWCC 5 cut(s) 71, 743, 956, 1028, 1490
BmgT120I GGNCC 5 cut(s) 71, 743, 956, 1028, 1490
BmrFI CCNGG 3 cut(s) 1412, 1946, 2124
BmrI ACTGGG 2 cut(s) 141, 441
BmsI GCATC 5 cut(s) 438, 1283, 1813, 2035, 2136
BmtI GCTAGC 1 cut(s) 1158
BmuI ACTGGG 2 cut(s) 141, 441
BplI GAGNNNNNCTC 4 cut(s) 155, 187, 1722, 1754
BpmI CTGGAG 1 cut(s) 738
Bpu10I CCTNAGC 1 cut(s) 269
BpuEI CTTGAG 2 cut(s) 1712, 1825
BsaI GGTCTC 2 cut(s) 1978, 2113
BsaJI CCNNGG 4 cut(s) 313, 325, 1102, 2017
BsaWI WCCGGW 2 cut(s) 1025, 1629
BsaXI ACNNNNNCTCC 4 cut(s) 491, 521, 1716, 1746
Bsc4I CCNNNNNNNGG 8 cut(s) 573, 758, 965, 1051, 1108, 1130, 1543, 1945
Bse118I RCCGGY 3 cut(s) 1025, 1666, 2048
Bse1I ACTGG 8 cut(s) 136, 436, 529, 755, 873, 959, 1135, 1939
Bse21I CCTNAGG 1 cut(s) 375
Bse3DI GCAATG 1 cut(s) 1248
BseBI CCWGG 3 cut(s) 1412, 1946, 2124
BseDI CCNNGG 4 cut(s) 313, 325, 1102, 2017
BseGI GGATG 3 cut(s) 53, 400, 985
BseLI CCNNNNNNNGG 8 cut(s) 573, 758, 965, 1051, 1108, 1130, 1543, 1945
BseMI GCAATG 1 cut(s) 1248
BseMII CTCAG 5 cut(s) 22, 44, 260, 389, 770
BseNI ACTGG 8 cut(s) 136, 436, 529, 755, 873, 959, 1135, 1939
BseRI GAGGAG 3 cut(s) 180, 363, 1677
BseSI GKGCMC 1 cut(s) 2026
BseYI CCCAGC 3 cut(s) 937, 1469, 2026
Bsh1285I CGRYCG 1 cut(s) 497
BshFI GGCC 7 cut(s) 566, 802, 1112, 1359, 1959, 2042, 2052
BshNI GGYRCC 3 cut(s) 623, 1632, 2021
BshTI ACCGGT 1 cut(s) 1025
BsiEI CGRYCG 1 cut(s) 497
BsiHKAI GWGCWC 2 cut(s) 342, 1578
BsiSI CCGG 4 cut(s) 1026, 1630, 1667, 2049
BslFI GGGAC 2 cut(s) 954, 1476
BslI CCNNNNNNNGG 8 cut(s) 573, 758, 965, 1051, 1108, 1130, 1543, 1945
BsmAI GTCTC 2 cut(s) 1978, 2113
BsmFI GGGAC 2 cut(s) 954, 1476
BsnI GGCC 7 cut(s) 566, 802, 1112, 1359, 1959, 2042, 2052
Bso31I GGTCTC 2 cut(s) 1978, 2113
Bsp1286I GDGCHC 3 cut(s) 342, 1578, 2026
Bsp19I CCATGG 1 cut(s) 1102
BspACI CCGC 7 cut(s) 665, 1079, 1125, 1276, 1338, 1841, 1861
BspANI GGCC 7 cut(s) 566, 802, 1112, 1359, 1959, 2042, 2052
BspCNI CTCAG 5 cut(s) 21, 43, 261, 388, 771
BspMAI CTGCAG 3 cut(s) 1093, 1780, 2118
BspMI ACCTGC 1 cut(s) 1331
BspOI GCTAGC 1 cut(s) 1158
BspPI GGATC 7 cut(s) 325, 585, 1033, 1115, 1759, 1902, 1915
BspQI GCTCTTC 2 cut(s) 110, 927
BspT107I GGYRCC 3 cut(s) 623, 1632, 2021
BspTNI GGTCTC 2 cut(s) 1978, 2113
BsrDI GCAATG 1 cut(s) 1248
BsrFI RCCGGY 3 cut(s) 1025, 1666, 2048
BsrI ACTGG 8 cut(s) 136, 436, 529, 755, 873, 959, 1135, 1939
BssAI RCCGGY 3 cut(s) 1025, 1666, 2048
BssECI CCNNGG 4 cut(s) 313, 325, 1102, 2017
BssSI CACGAG 1 cut(s) 894
BssT1I CCWWGG 3 cut(s) 313, 325, 1102
Bst2BI CACGAG 1 cut(s) 894
Bst2UI CCWGG 3 cut(s) 1412, 1946, 2124
Bst4CI ACNGT 8 cut(s) 150, 346, 495, 1164, 1816, 1897, 2021, 2080
Bst6I CTCTTC 4 cut(s) 110, 433, 927, 1274
BstAPI GCANNNNNTGC 3 cut(s) 1235, 1346, 1441
BstC8I GCNNGC 7 cut(s) 553, 642, 1156, 1323, 1531, 1668, 2050
BstDEI CTNAG 7 cut(s) 8, 30, 45, 269, 375, 779, 806
BstDSI CCRYGG 2 cut(s) 1102, 2017
BstEII GGTNACC 2 cut(s) 308, 668
BstENI CCTNNNNNAGG 1 cut(s) 756
BstF5I GGATG 3 cut(s) 53, 400, 985
BstH2I RGCGCY 1 cut(s) 777
BstHHI GCGC 1 cut(s) 776
BstMAI GTCTC 2 cut(s) 1978, 2113
BstMCI CGRYCG 1 cut(s) 497
BstMWI GCNNNNNNNGC 9 cut(s) 632, 641, 650, 1085, 1196, 1235, 1346, 1441, 1598
BstNI CCWGG 3 cut(s) 1412, 1946, 2124
BstNSI RCATGY 3 cut(s) 1325, 1533, 1770
BstPI GGTNACC 2 cut(s) 308, 668
BstSCI CCNGG 3 cut(s) 1410, 1944, 2122
BstSFI CTRYAG 3 cut(s) 1089, 1776, 2114
BstSLI GKGCMC 1 cut(s) 2026
BstX2I RGATCY 2 cut(s) 577, 1907
BstYI RGATCY 2 cut(s) 577, 1907
Bsu36I CCTNAGG 1 cut(s) 375
BsuRI GGCC 7 cut(s) 566, 802, 1112, 1359, 1959, 2042, 2052
BtgI CCRYGG 2 cut(s) 1102, 2017
BtgZI GCGATG 1 cut(s) 668
BtsCI GGATG 3 cut(s) 53, 400, 985
BtsI GCAGTG 2 cut(s) 1593, 2111
BtsIMutI CAGTG 6 cut(s) 146, 342, 522, 913, 1593, 2111
BveI ACCTGC 1 cut(s) 1331
Cac8I GCNNGC 7 cut(s) 553, 642, 1156, 1323, 1531, 1668, 2050
CaiI CAGNNNCTG 2 cut(s) 1441, 1945
CfoI GCGC 1 cut(s) 776
Cfr10I RCCGGY 3 cut(s) 1025, 1666, 2048
Cfr13I GGNCC 5 cut(s) 71, 743, 956, 1028, 1490
CsiI ACCWGGT 1 cut(s) 1410
Csp6I GTAC 5 cut(s) 1099, 1418, 1633, 2008, 2081
CspAI ACCGGT 1 cut(s) 1025
CspCI CAANNNNNGTGG 2 cut(s) 1770, 1805
CviQI GTAC 5 cut(s) 1099, 1418, 1633, 2008, 2081
DdeI CTNAG 7 cut(s) 8, 30, 45, 269, 375, 779, 806
DraIII CACNNNGTG 3 cut(s) 361, 976, 1502
EaeI YGGCCR 3 cut(s) 564, 1110, 2040
Eam1104I CTCTTC 4 cut(s) 110, 433, 927, 1274
EarI CTCTTC 4 cut(s) 110, 433, 927, 1274
EciI GGCGGA 1 cut(s) 1265
Ecl136II GAGCTC 2 cut(s) 340, 1576
Eco130I CCWWGG 3 cut(s) 313, 325, 1102
Eco147I AGGCCT 2 cut(s) 802, 1359
Eco24I GRGCYC 2 cut(s) 342, 1578
Eco31I GGTCTC 2 cut(s) 1978, 2113
Eco47I GGWCC 5 cut(s) 71, 743, 956, 1028, 1490
Eco47III AGCGCT 1 cut(s) 775
Eco53kI GAGCTC 2 cut(s) 340, 1576
Eco57I CTGAAG 1 cut(s) 1997
Eco81I CCTNAGG 1 cut(s) 375
Eco91I GGTNACC 2 cut(s) 308, 668
EcoICRI GAGCTC 2 cut(s) 340, 1576
EcoNI CCTNNNNNAGG 1 cut(s) 756
EcoO65I GGTNACC 2 cut(s) 308, 668
EcoRII CCWGG 3 cut(s) 1410, 1944, 2122
EcoT14I CCWWGG 3 cut(s) 313, 325, 1102
EcoT38I GRGCYC 2 cut(s) 342, 1578
ErhI CCWWGG 3 cut(s) 313, 325, 1102
FaqI GGGAC 2 cut(s) 954, 1476
FauI CCCGC 2 cut(s) 658, 1132
FauNDI CATATG 2 cut(s) 1075, 1584
FbaI TGATCA 2 cut(s) 903, 1047
FokI GGATG 3 cut(s) 40, 407, 992
FriOI GRGCYC 2 cut(s) 342, 1578
FspBI CTAG 3 cut(s) 314, 1155, 1844
GlaI GCGC 1 cut(s) 775
GsaI CCCAGC 3 cut(s) 941, 1473, 2030
GsuI CTGGAG 1 cut(s) 738
HaeII RGCGCY 1 cut(s) 777
HaeIII GGCC 7 cut(s) 566, 802, 1112, 1359, 1959, 2042, 2052
HapII CCGG 4 cut(s) 1026, 1630, 1667, 2049
HhaI GCGC 1 cut(s) 776
Hin6I GCGC 1 cut(s) 774
HinP1I GCGC 1 cut(s) 774
HindIII AAGCTT 1 cut(s) 642
HinfI GANTC 4 cut(s) 385, 677, 1264, 1807
HpaII CCGG 4 cut(s) 1026, 1630, 1667, 2049
HphI GGTGA 2 cut(s) 302, 629
Hpy188III TCNNGA 9 cut(s) 377, 427, 737, 1036, 1691, 1762, 1952, 1964, 2000
HpyAV CCTTC 7 cut(s) 1078, 1349, 1569, 1715, 1898, 1970, 2070
HpyCH4III ACNGT 8 cut(s) 150, 346, 495, 1164, 1816, 1897, 2021, 2080
HpyCH4IV ACGT 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 9 cut(s) 632, 641, 650, 1085, 1196, 1235, 1346, 1441, 1598
HpyF3I CTNAG 7 cut(s) 8, 30, 45, 269, 375, 779, 806
HpySE526I ACGT 1 cut(s) 291
HspAI GCGC 1 cut(s) 774
KpnI GGTACC 1 cut(s) 1636
KroI GCCGGC 2 cut(s) 1666, 2048
KroNI GCCGGC 2 cut(s) 1668, 2050
Ksp22I TGATCA 2 cut(s) 903, 1047
LguI GCTCTTC 2 cut(s) 110, 927
LmnI GCTCC 6 cut(s) 244, 337, 376, 761, 1481, 1561
LweI GCATC 5 cut(s) 438, 1283, 1813, 2035, 2136
MabI ACCWGGT 1 cut(s) 1410
MaeI CTAG 3 cut(s) 314, 1155, 1844
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 6 cut(s) 308, 668, 835, 968, 1327, 1516
MboII GAAGA 8 cut(s) 97, 277, 450, 944, 1261, 1719, 1913, 1988
MflI RGATCY 2 cut(s) 577, 1907
MhlI GDGCHC 3 cut(s) 342, 1578, 2026
MlsI TGGCCA 1 cut(s) 1112
MluCI AATT 6 cut(s) 216, 254, 690, 812, 846, 1377
MluNI TGGCCA 1 cut(s) 1112
MlyI GAGTC 1 cut(s) 1816
MmeI TCCRAC 5 cut(s) 132, 477, 1285, 1310, 1459
Mox20I TGGCCA 1 cut(s) 1112
MroNI GCCGGC 2 cut(s) 1666, 2048
MroXI GAANNNNTTC 2 cut(s) 1268, 1367
MscI TGGCCA 1 cut(s) 1112
MseI TTAA 4 cut(s) 249, 767, 815, 1008
Msp20I TGGCCA 1 cut(s) 1112
MspI CCGG 4 cut(s) 1026, 1630, 1667, 2049
MspR9I CCNGG 3 cut(s) 1412, 1946, 2124
MvaI CCWGG 3 cut(s) 1412, 1946, 2124
MwoI GCNNNNNNNGC 9 cut(s) 632, 641, 650, 1085, 1196, 1235, 1346, 1441, 1598
NaeI GCCGGC 2 cut(s) 1668, 2050
NcoI CCATGG 1 cut(s) 1102
NdeI CATATG 2 cut(s) 1075, 1584
NgoMIV GCCGGC 2 cut(s) 1666, 2048
NheI GCTAGC 1 cut(s) 1154
NmuCI GTSAC 2 cut(s) 308, 968
NspI RCATGY 3 cut(s) 1325, 1533, 1770
PaeI GCATGC 2 cut(s) 1325, 1533
PceI AGGCCT 2 cut(s) 802, 1359
PciI ACATGT 1 cut(s) 1766
PciSI GCTCTTC 2 cut(s) 110, 927
PdiI GCCGGC 2 cut(s) 1668, 2050
PdmI GAANNNNTTC 2 cut(s) 1268, 1367
PfeI GAWTC 3 cut(s) 385, 677, 1264
PflFI GACNNNGTC 1 cut(s) 1412
PflMI CCANNNNNTGG 3 cut(s) 965, 1108, 1945
PinAI ACCGGT 1 cut(s) 1025
PleI GAGTC 1 cut(s) 1815
PpsI GAGTC 1 cut(s) 1815
PscI ACATGT 1 cut(s) 1766
Psp124BI GAGCTC 2 cut(s) 342, 1578
Psp1406I AACGTT 1 cut(s) 291
Psp6I CCWGG 3 cut(s) 1410, 1944, 2122
PspEI GGTNACC 2 cut(s) 308, 668
PspFI CCCAGC 3 cut(s) 937, 1469, 2026
PspGI CCWGG 3 cut(s) 1410, 1944, 2122
PspPI GGNCC 5 cut(s) 71, 743, 956, 1028, 1490
PstI CTGCAG 3 cut(s) 1093, 1780, 2118
PstNI CAGNNNCTG 2 cut(s) 1441, 1945
PsuI RGATCY 2 cut(s) 577, 1907
PsyI GACNNNGTC 1 cut(s) 1412
RsaI GTAC 5 cut(s) 1100, 1419, 1634, 2009, 2082
RsaNI GTAC 5 cut(s) 1099, 1418, 1633, 2008, 2081
SacI GAGCTC 2 cut(s) 342, 1578
SapI GCTCTTC 2 cut(s) 110, 927
SaqAI TTAA 4 cut(s) 249, 767, 815, 1008
Sau96I GGNCC 5 cut(s) 71, 743, 956, 1028, 1490
ScaI AGTACT 1 cut(s) 2082
SchI GAGTC 1 cut(s) 1816
ScrFI CCNGG 3 cut(s) 1412, 1946, 2124
SduI GDGCHC 3 cut(s) 342, 1578, 2026
SexAI ACCWGGT 1 cut(s) 1410
SfaNI GCATC 5 cut(s) 438, 1283, 1813, 2035, 2136
SfcI CTRYAG 3 cut(s) 1089, 1776, 2114
SinI GGWCC 5 cut(s) 71, 743, 956, 1028, 1490
SmlI CTYRAG 2 cut(s) 1691, 1804
SmoI CTYRAG 2 cut(s) 1691, 1804
SphI GCATGC 2 cut(s) 1325, 1533
Sse9I AATT 6 cut(s) 216, 254, 690, 812, 846, 1377
SseBI AGGCCT 2 cut(s) 802, 1359
SsiI CCGC 7 cut(s) 665, 1079, 1125, 1276, 1338, 1841, 1861
SspI AATATT 1 cut(s) 1713
SspMI CTAG 3 cut(s) 314, 1155, 1844
SstI GAGCTC 2 cut(s) 342, 1578
StuI AGGCCT 2 cut(s) 802, 1359
StyD4I CCNGG 3 cut(s) 1410, 1944, 2122
StyI CCWWGG 3 cut(s) 313, 325, 1102
TaaI ACNGT 8 cut(s) 150, 346, 495, 1164, 1816, 1897, 2021, 2080
TaiI ACGT 1 cut(s) 294
TaqI TCGA 4 cut(s) 738, 963, 1063, 2130
TasI AATT 6 cut(s) 216, 254, 690, 812, 846, 1377
TatI WGTACW 1 cut(s) 2080
TauI GCSGC 1 cut(s) 1340
TfiI GAWTC 3 cut(s) 385, 677, 1264
Tru1I TTAA 4 cut(s) 249, 767, 815, 1008
Tru9I TTAA 4 cut(s) 249, 767, 815, 1008
TscAI CASTG 6 cut(s) 153, 349, 529, 913, 1600, 2118
TseFI GTSAC 2 cut(s) 308, 968
Tsp45I GTSAC 2 cut(s) 308, 968
TspDTI ATGAA 6 cut(s) 239, 663, 671, 879, 1277, 1571
TspGWI ACGGA 1 cut(s) 1067
TspRI CASTG 6 cut(s) 153, 349, 529, 913, 1600, 2118
Tth111I GACNNNGTC 1 cut(s) 1412
Van91I CCANNNNNTGG 3 cut(s) 965, 1108, 1945
VpaK11BI GGWCC 5 cut(s) 71, 743, 956, 1028, 1490
XagI CCTNNNNNAGG 1 cut(s) 756
XceI RCATGY 3 cut(s) 1325, 1533, 1770
XcmI CCANNNNNNNNNTGG 2 cut(s) 65, 193
XmaJI CCTAGG 1 cut(s) 313
XmnI GAANNNNTTC 2 cut(s) 1268, 1367
XspI CTAG 3 cut(s) 314, 1155, 1844
ZrmI AGTACT 1 cut(s) 2082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.