pycom01g06910

1-deoxy-D-xylulose-5-phosphate synthase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000901
Physical Location & Seq
Forward (+)
7442737 .. 7444317
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g06910.4

Sequence Viewer

Length: 1227 bp
ATGATAAGCGCTTCTGGATCCACTCTCTTTGAGGAGCTTGGGTTATATTATATCGGTCCGGTGGATGGGCATAATGTTGCAGACTTGGTCACCATTTTTCAAAGAGTGAAAGCCATGCCGGCGCCGGGGCCAGTTTTAATCCACATCATGACGGAGAAAGGAAAGGGCTATCCCCCAGCTGAGGCAGCAGCTGACAATATGCACGGTGTGGTCAAGTTTGATCCAAAAACCGGCAAGCAATTTAAGACCAAATCCCCTACACTTTCATATACTCAGTACTTTGCTGAATCTCTTATAAAAGAAGCTGAAATCGATGACAAGATTGTAGCCATCCATGCAGCAATGGGTGGTGGCACTGGTCTAAATTATTTCCAGAAGAAGTTTCCAGATCGTTGCTTCGATGTGGGAATCGCCGAGCAACACGCTGTTACATTTGCAGCTGGTTTAGCTGCCGAAGGTCTGAAGCCGTTCTGCGCTATCTACTCATCATTCCTGCAACGAGGATATGATCAGGTGATTCACGATGTAGATCTTCAAAAACTTCCTGTCCGCTTTGCAATGGATCGAGCTGGCTTGGTTGGTACAGATGGGCCAACCCATTGTGGAGCATTTGATATCACATACATGGCTTGTTTGCCCAACATGGTGGTTATGGCCCCGTCTGACGAAGCTGAGCTGATGAACATGGTCGCCACTGCAGCAGCCATAGATGACAGACCTAGCTGCTTCAGATTTCCAAGAGGCAATGGTATCGGAGCGCTTCTTCCTGTTAATAACAAAGGAACCCCACTCGAGGTTGGTAAAGGAAGAATACTGATGGAAGGCAGTAGAGTTGCGATTTTGGGATATGGTTCCATAGTTCAACAATGCGTGGAAGCTGCAAACAAGCTGAAAACCAGGGACATACATGTTACAGTAGCCGATGCACGATTTTGCAAACCTCTGGATACCGAACTAATCAAGCAATTGGCTAGGGAGCATGAGATCGATATTACAGTGGAAGAAGGTTCAATTGGAGGTTTTGGATCTCATGTATCCCACTTCCTAAGTTTAAGTGGTATTCTTGATGGACCGCTCAAGTTGAGAGCAATGGTACTTCCTGATACATACATTGATCATGGAGCACCGCAGGATCAGCTTGAAGAAGCAGGGCTATCCTCGAGGCATATCTCAGCCACGGTATTATCTCTGTTGGGGAGGCCAAAAGAAGCTCTACAGTTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00730 ko00900 ko01100 ko01110 ko01130 map00730 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
DXP_synthase_N Transket_pyr Transketolase_C

Protein Analysis

409

Amino Acids

43.99

Weight (kDa)

5.81

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
AbsI CCTCGAGG 1 cut(s) 1159
AccB1I GGYRCC 1 cut(s) 121
AccBSI CCGCTC 1 cut(s) 1075
AciI CCGC 3 cut(s) 550, 1073, 1127
AclWI GGATC 6 cut(s) 12, 25, 215, 570, 1033, 1140
AcuI CTGAAG 2 cut(s) 482, 712
AcyI GRCGYC 1 cut(s) 122
AdeI CACNNNGTG 1 cut(s) 208
AfaI GTAC 3 cut(s) 278, 583, 1095
AfeI AGCGCT 2 cut(s) 10, 759
AfiI CCNNNNNNNGG 5 cut(s) 65, 125, 181, 230, 793
AflIII ACRYGT 1 cut(s) 907
AgsI TTSAA 6 cut(s) 101, 536, 863, 1011, 1142, 1222
AjnI CCWGG 1 cut(s) 896
AjuI GAANNNNNNNTTGG 2 cut(s) 996, 1028
Alw21I GWGCWC 1 cut(s) 1126
AlwI GGATC 6 cut(s) 12, 25, 215, 570, 1033, 1140
AlwNI CAGNNNCTG 1 cut(s) 191
Ama87I CYCGRG 2 cut(s) 791, 1159
Aor51HI AGCGCT 2 cut(s) 10, 759
AoxI GGCC 4 cut(s) 128, 590, 654, 1199
ApeKI GCWGC 9 cut(s) 185, 188, 338, 437, 449, 698, 701, 723, 878
Asp700I GAANNNNTTC 1 cut(s) 467
AspLEI GCGC 4 cut(s) 11, 124, 476, 760
AspS9I GGNCC 5 cut(s) 56, 128, 590, 655, 1070
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 82, 526
AvaI CYCGRG 2 cut(s) 791, 1159
AvaII GGWCC 2 cut(s) 56, 1070
BamHI GGATCC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 1126
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 9 cut(s) 197, 200, 350, 436, 449, 710, 710, 713, 865
BccI CCATC 5 cut(s) 59, 338, 581, 811, 1061
BceAI ACGGC 1 cut(s) 451
BcgI CGANNNNNNTGC 2 cut(s) 733, 767
BciT130I CCWGG 1 cut(s) 898
BciVI GTATCC 2 cut(s) 940, 1045
BclI TGATCA 2 cut(s) 508, 1114
BcnI CCSGG 1 cut(s) 126
BfaI CTAG 2 cut(s) 720, 972
BfmI CTRYAG 2 cut(s) 696, 1214
BfoI RGCGCY 3 cut(s) 12, 125, 761
BfuI GTATCC 2 cut(s) 940, 1045
BglI GCCNNNNNGGC 1 cut(s) 119
BglII AGATCT 1 cut(s) 529
BisI GCNGC 9 cut(s) 186, 189, 339, 438, 450, 699, 702, 724, 879
BlpI GCTNAGC 1 cut(s) 672
BlsI GCNGC 9 cut(s) 187, 190, 340, 439, 451, 700, 703, 725, 880
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 2 cut(s) 126, 898
Bme18I GGWCC 2 cut(s) 56, 1070
BmeT110I CYCGRG 2 cut(s) 791, 1159
BmgT120I GGNCC 5 cut(s) 56, 128, 590, 655, 1070
BmiI GGNNCC 6 cut(s) 19, 123, 129, 657, 784, 853
BmrFI CCNGG 2 cut(s) 126, 898
BmsI GCATC 1 cut(s) 913
Bpu10I CCTNAGC 1 cut(s) 180
Bpu1102I GCTNAGC 1 cut(s) 672
BpuEI CTTGAG 1 cut(s) 1061
BpuMI CCSGG 1 cut(s) 126
Bsa29I ATCGAT 2 cut(s) 312, 987
BsaBI GATNNNNATC 1 cut(s) 528
BsaHI GRCGYC 1 cut(s) 122
BsaJI CCNNGG 3 cut(s) 125, 897, 1176
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 5 cut(s) 65, 125, 181, 230, 793
Bse118I RCCGGY 2 cut(s) 118, 230
Bse1I ACTGG 2 cut(s) 131, 361
Bse3DI GCAATG 4 cut(s) 348, 564, 751, 1095
Bse8I GATNNNNATC 1 cut(s) 528
BseBI CCWGG 1 cut(s) 898
BseCI ATCGAT 2 cut(s) 312, 987
BseDI CCNNGG 3 cut(s) 125, 897, 1176
BseGI GGATG 2 cut(s) 70, 330
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 5 cut(s) 65, 125, 181, 230, 793
BseMI GCAATG 4 cut(s) 348, 564, 751, 1095
BseMII CTCAG 4 cut(s) 171, 287, 663, 1185
BseNI ACTGG 2 cut(s) 131, 361
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 9 cut(s) 197, 200, 350, 436, 449, 710, 710, 713, 865
BseYI CCCAGC 1 cut(s) 175
BshFI GGCC 4 cut(s) 130, 592, 656, 1201
BshNI GGYRCC 1 cut(s) 121
BshVI ATCGAT 2 cut(s) 312, 987
BsiHKAI GWGCWC 1 cut(s) 1126
BsiHKCI CYCGRG 2 cut(s) 791, 1159
BsiSI CCGG 4 cut(s) 59, 119, 125, 231
BslFI GGGAC 1 cut(s) 914
BslI CCNNNNNNNGG 5 cut(s) 65, 125, 181, 230, 793
BsmFI GGGAC 1 cut(s) 914
BsnI GGCC 4 cut(s) 130, 592, 656, 1201
BsoBI CYCGRG 2 cut(s) 791, 1159
Bsp1286I GDGCHC 1 cut(s) 1126
Bsp1720I GCTNAGC 1 cut(s) 672
BspACI CCGC 3 cut(s) 550, 1073, 1127
BspANI GGCC 4 cut(s) 130, 592, 656, 1201
BspCNI CTCAG 4 cut(s) 172, 286, 664, 1184
BspDI ATCGAT 2 cut(s) 312, 987
BspHI TCATGA 1 cut(s) 147
BspLI GGNNCC 6 cut(s) 19, 123, 129, 657, 784, 853
BspMAI CTGCAG 1 cut(s) 700
BspPI GGATC 6 cut(s) 12, 25, 215, 570, 1033, 1140
BspT107I GGYRCC 1 cut(s) 121
BsrBI CCGCTC 1 cut(s) 1075
BsrDI GCAATG 4 cut(s) 348, 564, 751, 1095
BsrFI RCCGGY 2 cut(s) 118, 230
BsrI ACTGG 2 cut(s) 131, 361
BssAI RCCGGY 2 cut(s) 118, 230
BssECI CCNNGG 3 cut(s) 125, 897, 1176
BssNI GRCGYC 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 898
Bst4CI ACNGT 5 cut(s) 206, 916, 997, 1180, 1218
BstACI GRCGYC 1 cut(s) 122
BstC8I GCNNGC 3 cut(s) 120, 236, 571
BstDEI CTNAG 5 cut(s) 180, 273, 672, 1046, 1171
BstDSI CCRYGG 1 cut(s) 1176
BstEII GGTNACC 1 cut(s) 88
BstF5I GGATG 2 cut(s) 70, 330
BstH2I RGCGCY 3 cut(s) 12, 125, 761
BstHHI GCGC 4 cut(s) 11, 124, 476, 760
BstMWI GCNNNNNNNGC 6 cut(s) 119, 185, 335, 446, 698, 1135
BstNI CCWGG 1 cut(s) 898
BstNSI RCATGY 1 cut(s) 911
BstPI GGTNACC 1 cut(s) 88
BstSCI CCNGG 2 cut(s) 124, 896
BstSFI CTRYAG 2 cut(s) 696, 1214
BstV1I GCAGC 9 cut(s) 197, 200, 350, 436, 449, 710, 710, 713, 865
BstX2I RGATCY 3 cut(s) 17, 529, 1025
BstXI CCANNNNNNTGG 1 cut(s) 646
BstYI RGATCY 3 cut(s) 17, 529, 1025
Bsu15I ATCGAT 2 cut(s) 312, 987
BsuI GTATCC 2 cut(s) 940, 1045
BsuRI GGCC 4 cut(s) 130, 592, 656, 1201
BsuTUI ATCGAT 2 cut(s) 312, 987
BtgI CCRYGG 1 cut(s) 1176
BtsCI GGATG 2 cut(s) 70, 330
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 3 cut(s) 354, 693, 1002
Cac8I GCNNGC 3 cut(s) 120, 236, 571
CaiI CAGNNNCTG 1 cut(s) 191
CciI TCATGA 1 cut(s) 147
CfoI GCGC 4 cut(s) 11, 124, 476, 760
Cfr10I RCCGGY 2 cut(s) 118, 230
Cfr13I GGNCC 5 cut(s) 56, 128, 590, 655, 1070
ClaI ATCGAT 2 cut(s) 312, 987
CpoI CGGWCCG 1 cut(s) 56
Csp6I GTAC 3 cut(s) 277, 582, 1094
CspCI CAANNNNNGTGG 2 cut(s) 10, 45
CspI CGGWCCG 1 cut(s) 56
CviQI GTAC 3 cut(s) 277, 582, 1094
DdeI CTNAG 5 cut(s) 180, 273, 672, 1046, 1171
DinI GGCGCC 1 cut(s) 123
DraIII CACNNNGTG 1 cut(s) 208
Eco32I GATATC 1 cut(s) 616
Eco47I GGWCC 2 cut(s) 56, 1070
Eco47III AGCGCT 2 cut(s) 10, 759
Eco57I CTGAAG 2 cut(s) 482, 712
Eco88I CYCGRG 2 cut(s) 791, 1159
Eco91I GGTNACC 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 896
EcoRV GATATC 1 cut(s) 616
EgeI GGCGCC 1 cut(s) 123
EheI GGCGCC 1 cut(s) 123
FaqI GGGAC 1 cut(s) 914
FbaI TGATCA 2 cut(s) 508, 1114
Fnu4HI GCNGC 9 cut(s) 186, 189, 339, 438, 450, 699, 702, 724, 879
FokI GGATG 2 cut(s) 77, 317
Fsp4HI GCNGC 9 cut(s) 186, 189, 339, 438, 450, 699, 702, 724, 879
FspBI CTAG 2 cut(s) 720, 972
GlaI GCGC 4 cut(s) 10, 123, 475, 759
GluI GCNGC 9 cut(s) 186, 189, 339, 438, 450, 699, 702, 724, 879
GsaI CCCAGC 1 cut(s) 179
HaeII RGCGCY 3 cut(s) 12, 125, 761
HaeIII GGCC 4 cut(s) 130, 592, 656, 1201
HapII CCGG 4 cut(s) 59, 119, 125, 231
HhaI GCGC 4 cut(s) 11, 124, 476, 760
Hin1I GRCGYC 1 cut(s) 122
Hin6I GCGC 4 cut(s) 9, 122, 474, 758
HinP1I GCGC 4 cut(s) 9, 122, 474, 758
HinfI GANTC 3 cut(s) 287, 408, 517
HpaII CCGG 4 cut(s) 59, 119, 125, 231
HphI GGTGA 2 cut(s) 82, 526
Hpy188I TCNGA 4 cut(s) 462, 664, 731, 755
Hpy188III TCNNGA 8 cut(s) 15, 148, 373, 386, 521, 944, 1064, 1100
HpyAV CCTTC 3 cut(s) 449, 815, 998
HpyCH4III ACNGT 5 cut(s) 206, 916, 997, 1180, 1218
HpyF10VI GCNNNNNNNGC 6 cut(s) 119, 185, 335, 446, 698, 1135
HpyF3I CTNAG 5 cut(s) 180, 273, 672, 1046, 1171
Hsp92I GRCGYC 1 cut(s) 122
HspAI GCGC 4 cut(s) 9, 122, 474, 758
KasI GGCGCC 1 cut(s) 121
KroI GCCGGC 1 cut(s) 118
KroNI GCCGGC 1 cut(s) 120
Ksp22I TGATCA 2 cut(s) 508, 1114
LmnI GCTCC 5 cut(s) 34, 605, 755, 976, 1121
Lsp1109I GCAGC 9 cut(s) 197, 200, 350, 436, 449, 710, 710, 713, 865
LweI GCATC 1 cut(s) 913
MaeI CTAG 2 cut(s) 720, 972
MaeIII GTNAC 3 cut(s) 88, 427, 910
MbiI CCGCTC 1 cut(s) 1075
MboII GAAGA 6 cut(s) 388, 524, 755, 819, 1013, 1154
MfeI CAATTG 2 cut(s) 965, 1011
MflI RGATCY 3 cut(s) 17, 529, 1025
MhlI GDGCHC 1 cut(s) 1126
MluCI AATT 4 cut(s) 239, 364, 965, 1011
Mly113I GGCGCC 1 cut(s) 122
MroNI GCCGGC 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 467
MseI TTAA 4 cut(s) 137, 243, 771, 1052
MslI CAYNNNNRTG 1 cut(s) 623
MspA1I CMGCKG 3 cut(s) 179, 191, 440
MspI CCGG 4 cut(s) 59, 119, 125, 231
MspR9I CCNGG 2 cut(s) 126, 898
MunI CAATTG 2 cut(s) 965, 1011
MvaI CCWGG 1 cut(s) 898
MwoI GCNNNNNNNGC 6 cut(s) 119, 185, 335, 446, 698, 1135
NaeI GCCGGC 1 cut(s) 120
NarI GGCGCC 1 cut(s) 122
NciI CCSGG 1 cut(s) 126
NgoMIV GCCGGC 1 cut(s) 118
NlaIV GGNNCC 6 cut(s) 19, 123, 129, 657, 784, 853
NmeAIII GCCGAG 1 cut(s) 439
NmuCI GTSAC 1 cut(s) 88
NspI RCATGY 1 cut(s) 911
PaeR7I CTCGAG 2 cut(s) 791, 1159
PagI TCATGA 1 cut(s) 147
PciI ACATGT 1 cut(s) 907
PdiI GCCGGC 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 467
PfeI GAWTC 3 cut(s) 287, 408, 517
PflFI GACNNNGTC 1 cut(s) 86
PkrI GCNGC 9 cut(s) 187, 190, 340, 439, 451, 700, 703, 725, 880
PluTI GGCGCC 1 cut(s) 125
PscI ACATGT 1 cut(s) 907
PsiI TTATAA 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 896
PspEI GGTNACC 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 175
PspGI CCWGG 1 cut(s) 896
PspN4I GGNNCC 6 cut(s) 19, 123, 129, 657, 784, 853
PspPI GGNCC 5 cut(s) 56, 128, 590, 655, 1070
PspXI VCTCGAGB 2 cut(s) 791, 1159
PstI CTGCAG 1 cut(s) 700
PstNI CAGNNNCTG 1 cut(s) 191
PsuI RGATCY 3 cut(s) 17, 529, 1025
PsyI GACNNNGTC 1 cut(s) 86
PvuII CAGCTG 3 cut(s) 179, 191, 440
RsaI GTAC 3 cut(s) 278, 583, 1095
RsaNI GTAC 3 cut(s) 277, 582, 1094
RseI CAYNNNNRTG 1 cut(s) 623
Rsr2I CGGWCCG 1 cut(s) 56
RsrII CGGWCCG 1 cut(s) 56
SaqAI TTAA 4 cut(s) 137, 243, 771, 1052
SatI GCNGC 9 cut(s) 186, 189, 339, 438, 450, 699, 702, 724, 879
Sau96I GGNCC 5 cut(s) 56, 128, 590, 655, 1070
ScaI AGTACT 1 cut(s) 278
ScrFI CCNGG 2 cut(s) 126, 898
SduI GDGCHC 1 cut(s) 1126
SfaNI GCATC 1 cut(s) 913
SfcI CTRYAG 2 cut(s) 696, 1214
SfoI GGCGCC 1 cut(s) 123
Sfr274I CTCGAG 2 cut(s) 791, 1159
SinI GGWCC 2 cut(s) 56, 1070
SlaI CTCGAG 2 cut(s) 791, 1159
SmiMI CAYNNNNRTG 1 cut(s) 623
SmlI CTYRAG 3 cut(s) 791, 1076, 1159
SmoI CTYRAG 3 cut(s) 791, 1076, 1159
Sse9I AATT 4 cut(s) 239, 364, 965, 1011
SsiI CCGC 3 cut(s) 550, 1073, 1127
SspDI GGCGCC 1 cut(s) 121
SspMI CTAG 2 cut(s) 720, 972
StyD4I CCNGG 2 cut(s) 124, 896
TaaI ACNGT 5 cut(s) 206, 916, 997, 1180, 1218
TaqI TCGA 6 cut(s) 312, 399, 565, 792, 987, 1160
TaqII GACCGA 1 cut(s) 44
TasI AATT 4 cut(s) 239, 364, 965, 1011
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 3 cut(s) 287, 408, 517
Tru1I TTAA 4 cut(s) 137, 243, 771, 1052
Tru9I TTAA 4 cut(s) 137, 243, 771, 1052
TscAI CASTG 3 cut(s) 361, 700, 1002
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 9 cut(s) 185, 188, 338, 437, 449, 698, 701, 723, 878
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 255, 695
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 3 cut(s) 361, 700, 1002
Tth111I GACNNNGTC 1 cut(s) 86
VpaK11BI GGWCC 2 cut(s) 56, 1070
XceI RCATGY 1 cut(s) 911
XhoI CTCGAG 2 cut(s) 791, 1159
XmnI GAANNNNTTC 1 cut(s) 467
XspI CTAG 2 cut(s) 720, 972
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.