Rmu_sc0001496.1_g000014

cla,cla1,def,dxps2,dxs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001496.1
OG0000901
Physical Location & Seq
Forward (+)
39378 .. 42108
2731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001496.1_g000014.1.cds

Sequence Viewer

Length: 1122 bp
atgaccaagaaaattggacaacaagcacatgaagttgctgataaaattgactcctacatgagaggaatgatgggtggttctggggcatgtctgtttgaagaacttggactacactatattggtcctgtggatggtcataatgtcgaagaccttgtctacattttgaacaacatcaaatccttaccagaaccagggcttgttctgattcatgtcatcactgagaaaggaaaaagctatgctccagctgaagtttcccctgataagatgcatggtgctgtgaaatttgacactaagtcagggactcagttgtgggagtggtcaaattcagctgggcatgcaattaaggcgattaactccgcagttaacagatgtttcgatgttgggatagcagaacagcatgctataacctttgctgctggcctagctgcagaaggccttaaacctccttgtgctatttactcttcgtttcttcagagtgacttacaaaagctcccggtgagatttgctatagacaaggctagttttgtcggtgcagatggtccaccacattggggagcttttgatacaactttcatgacttgtttacctaacatggtggtcatggccccttcttctgagactcaacttagggatggttatagggtggccattttgggttacggaacaatagtacaaagctgtatagcagcggctgagctgcttcaagttctcaacatctccacaactatggctgatgcacgattctgcaagcctcttgatggaaatttgatcagacagctagctcaagaacatgagattctcattaccgtagaagaaggatcaatcggaggattcggctcccacgtttcccaattctttggcttgaatggattacttgatggcaagctcaagtggagggctatgatgcttcctgacagatatattgaacatggatctcagaaagaccaaactgaagcagcagggttgagttccaggcatattgcaacaattgtgttgtcaccttctcaactttcagaccaatactacagagagctagtaatcaccttctcagctttcagaccaatctgtatagtaattaatagtcctctaatagacgacaaggcgctccagctgctaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00730 ko00900 ko01100 ko01110 ko01130 map00730 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
DXP_synthase_N Transket_pyr Transketolase_C

Protein Analysis

373

Amino Acids

40.57

Weight (kDa)

5.73

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 156
AciI CCGC 2 cut(s) 357, 689
AclWI GGATC 2 cut(s) 826, 940
AcoI YGGCCR 1 cut(s) 645
AcsI RAATTY 3 cut(s) 281, 322, 763
AcuI CTGAAG 3 cut(s) 267, 455, 972
AfaI GTAC 1 cut(s) 672
AfiI CCNNNNNNNGG 4 cut(s) 131, 191, 551, 758
AgsI TTSAA 5 cut(s) 98, 166, 704, 865, 926
AhdI GACNNNNNGTC 1 cut(s) 292
AjnI CCWGG 2 cut(s) 190, 971
Alw26I GTCTC 1 cut(s) 611
AlwI GGATC 2 cut(s) 826, 940
AlwNI CAGNNNCTG 1 cut(s) 692
AoxI GGCC 4 cut(s) 418, 433, 603, 645
ApeKI GCWGC 6 cut(s) 413, 425, 686, 697, 956, 1111
ApoI RAATTY 3 cut(s) 281, 322, 763
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AseI ATTAAT 1 cut(s) 1077
AspLEI GCGC 1 cut(s) 1105
AspS9I GGNCC 3 cut(s) 122, 539, 604
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 3 cut(s) 508, 990, 1033
AsuNHI GCTAGC 1 cut(s) 778
AvaII GGWCC 2 cut(s) 122, 539
BalI TGGCCA 1 cut(s) 647
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 6 cut(s) 400, 412, 684, 698, 968, 1098
BccI CCATC 6 cut(s) 64, 125, 530, 626, 752, 872
BciT130I CCWGG 2 cut(s) 192, 973
BclI TGATCA 1 cut(s) 768
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 611
BfaI CTAG 4 cut(s) 422, 519, 779, 1034
BfmI CTRYAG 3 cut(s) 426, 507, 1024
BfoI RGCGCY 1 cut(s) 1106
BisI GCNGC 7 cut(s) 414, 426, 687, 690, 698, 957, 1112
BlpI GCTNAGC 1 cut(s) 693
BlsI GCNGC 7 cut(s) 415, 427, 688, 691, 699, 958, 1113
Bme1390I CCNGG 3 cut(s) 192, 494, 973
Bme18I GGWCC 2 cut(s) 122, 539
BmeRI GACNNNNNGTC 1 cut(s) 292
BmgT120I GGNCC 3 cut(s) 122, 539, 604
BmiI GGNNCC 2 cut(s) 606, 838
BmrFI CCNGG 3 cut(s) 192, 494, 973
BmsI GCATC 3 cut(s) 255, 724, 894
BmtI GCTAGC 1 cut(s) 782
BpiI GAAGAC 1 cut(s) 153
BpmI CTGGAG 2 cut(s) 225, 1091
Bpu1102I GCTNAGC 1 cut(s) 693
BpuEI CTTGAG 2 cut(s) 768, 872
BpuMI CCSGG 1 cut(s) 494
BsaJI CCNNGG 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 191, 551, 758
BseBI CCWGG 2 cut(s) 192, 973
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 2 cut(s) 136, 637
BseLI CCNNNNNNNGG 4 cut(s) 131, 191, 551, 758
BseMII CTCAG 6 cut(s) 210, 317, 606, 684, 950, 1062
BseXI GCAGC 6 cut(s) 400, 412, 684, 698, 968, 1098
BseYI CCCAGC 1 cut(s) 329
BsgI GTGCAG 1 cut(s) 552
BshFI GGCC 4 cut(s) 420, 435, 605, 647
BsiSI CCGG 1 cut(s) 494
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 4 cut(s) 131, 191, 551, 758
BsmAI GTCTC 1 cut(s) 611
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 4 cut(s) 420, 435, 605, 647
Bsp143I GATC 3 cut(s) 768, 818, 932
Bsp1720I GCTNAGC 1 cut(s) 693
BspACI CCGC 2 cut(s) 357, 689
BspANI GGCC 4 cut(s) 420, 435, 605, 647
BspCNI CTCAG 6 cut(s) 211, 316, 607, 685, 949, 1061
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 2 cut(s) 606, 838
BspMAI CTGCAG 1 cut(s) 430
BspOI GCTAGC 1 cut(s) 782
BspPI GGATC 2 cut(s) 826, 940
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 3 cut(s) 768, 818, 932
Bst2UI CCWGG 2 cut(s) 192, 973
Bst4CI ACNGT 1 cut(s) 808
Bst6I CTCTTC 1 cut(s) 466
BstC8I GCNNGC 6 cut(s) 336, 399, 418, 749, 780, 884
BstDEI CTNAG 8 cut(s) 219, 291, 303, 615, 626, 693, 936, 1048
BstF5I GGATG 2 cut(s) 136, 637
BstH2I RGCGCY 1 cut(s) 1106
BstHHI GCGC 1 cut(s) 1105
BstKTI GATC 3 cut(s) 771, 821, 935
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 3 cut(s) 768, 818, 932
BstMWI GCNNNNNNNGC 4 cut(s) 335, 344, 422, 1111
BstNI CCWGG 2 cut(s) 192, 973
BstNSI RCATGY 3 cut(s) 90, 338, 401
BstSCI CCNGG 3 cut(s) 190, 492, 971
BstSFI CTRYAG 3 cut(s) 426, 507, 1024
BstV1I GCAGC 6 cut(s) 400, 412, 684, 698, 968, 1098
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 932
BstXI CCANNNNNNTGG 3 cut(s) 549, 727, 857
BstYI RGATCY 1 cut(s) 932
BsuRI GGCC 4 cut(s) 420, 435, 605, 647
BtsCI GGATG 2 cut(s) 136, 637
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 6 cut(s) 336, 399, 418, 749, 780, 884
CaiI CAGNNNCTG 1 cut(s) 692
CciI TCATGA 1 cut(s) 573
CfoI GCGC 1 cut(s) 1105
Cfr13I GGNCC 3 cut(s) 122, 539, 604
Csp6I GTAC 1 cut(s) 671
CviQI GTAC 1 cut(s) 671
DdeI CTNAG 8 cut(s) 219, 291, 303, 615, 626, 693, 936, 1048
DpnI GATC 3 cut(s) 770, 820, 934
DpnII GATC 3 cut(s) 768, 818, 932
DriI GACNNNNNGTC 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 645
Eam1104I CTCTTC 1 cut(s) 466
Eam1105I GACNNNNNGTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 466
Eco147I AGGCCT 1 cut(s) 435
Eco47I GGWCC 2 cut(s) 122, 539
Eco57I CTGAAG 3 cut(s) 267, 455, 972
EcoRII CCWGG 2 cut(s) 190, 971
EcoT22I ATGCAT 1 cut(s) 270
FaqI GGGAC 1 cut(s) 313
FbaI TGATCA 1 cut(s) 768
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 7 cut(s) 414, 426, 687, 690, 698, 957, 1112
FokI GGATG 2 cut(s) 143, 644
Fsp4HI GCNGC 7 cut(s) 414, 426, 687, 690, 698, 957, 1112
FspBI CTAG 4 cut(s) 422, 519, 779, 1034
GlaI GCGC 1 cut(s) 1104
GluI GCNGC 7 cut(s) 414, 426, 687, 690, 698, 957, 1112
GsaI CCCAGC 1 cut(s) 333
GsuI CTGGAG 2 cut(s) 225, 1091
HaeII RGCGCY 1 cut(s) 1106
HaeIII GGCC 4 cut(s) 420, 435, 605, 647
HapII CCGG 1 cut(s) 494
HhaI GCGC 1 cut(s) 1105
Hin6I GCGC 1 cut(s) 1103
HinP1I GCGC 1 cut(s) 1103
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 7 cut(s) 50, 205, 301, 619, 741, 796, 831
HpaI GTTAAC 1 cut(s) 364
HpaII CCGG 1 cut(s) 494
HphI GGTGA 3 cut(s) 508, 990, 1033
Hpy166II GTNNAC 4 cut(s) 157, 364, 542, 584
Hpy188I TCNGA 8 cut(s) 204, 474, 616, 773, 827, 939, 1015, 1058
Hpy188III TCNNGA 4 cut(s) 574, 755, 785, 911
Hpy8I GTNNAC 4 cut(s) 157, 364, 542, 584
HpyAV CCTTC 5 cut(s) 425, 618, 809, 1011, 1054
HpyCH4III ACNGT 1 cut(s) 808
HpyCH4IV ACGT 1 cut(s) 843
HpyCH4V TGCA 7 cut(s) 268, 338, 428, 533, 737, 747, 983
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 344, 422, 1111
HpyF3I CTNAG 8 cut(s) 219, 291, 303, 615, 626, 693, 936, 1048
HpySE526I ACGT 1 cut(s) 843
HspAI GCGC 1 cut(s) 1103
Ksp22I TGATCA 1 cut(s) 768
KspAI GTTAAC 1 cut(s) 364
Kzo9I GATC 3 cut(s) 768, 818, 932
LmnI GCTCC 5 cut(s) 244, 495, 554, 842, 1110
Lsp1109I GCAGC 6 cut(s) 400, 412, 684, 698, 968, 1098
LweI GCATC 3 cut(s) 255, 724, 894
MaeI CTAG 4 cut(s) 422, 519, 779, 1034
MaeII ACGT 1 cut(s) 843
MaeIII GTNAC 3 cut(s) 476, 656, 996
MalI GATC 3 cut(s) 770, 820, 934
MboI GATC 3 cut(s) 768, 818, 932
MboII GAAGA 6 cut(s) 110, 158, 453, 461, 603, 824
MfeI CAATTG 1 cut(s) 987
MflI RGATCY 1 cut(s) 932
MlsI TGGCCA 1 cut(s) 647
MluNI TGGCCA 1 cut(s) 647
MlyI GAGTC 3 cut(s) 44, 295, 613
MnlI CCTC 6 cut(s) 56, 453, 762, 821, 888, 1095
Mox20I TGGCCA 1 cut(s) 647
Mph1103I ATGCAT 1 cut(s) 270
MscI TGGCCA 1 cut(s) 647
MseI TTAA 6 cut(s) 342, 351, 363, 438, 1077, 1120
MslI CAYNNNNRTG 1 cut(s) 725
Msp20I TGGCCA 1 cut(s) 647
MspA1I CMGCKG 4 cut(s) 245, 329, 689, 1111
MspI CCGG 1 cut(s) 494
MspR9I CCNGG 3 cut(s) 192, 494, 973
MunI CAATTG 1 cut(s) 987
MvaI CCWGG 2 cut(s) 192, 973
MwoI GCNNNNNNNGC 4 cut(s) 335, 344, 422, 1111
NciI CCSGG 1 cut(s) 494
NdeII GATC 3 cut(s) 768, 818, 932
NheI GCTAGC 1 cut(s) 778
NlaIV GGNNCC 2 cut(s) 606, 838
NmuCI GTSAC 2 cut(s) 476, 996
NsiI ATGCAT 1 cut(s) 270
NspI RCATGY 3 cut(s) 90, 338, 401
PaeI GCATGC 2 cut(s) 338, 401
PagI TCATGA 1 cut(s) 573
PceI AGGCCT 1 cut(s) 435
PcsI WCGNNNNNNNCGW 1 cut(s) 840
PfeI GAWTC 4 cut(s) 205, 741, 796, 831
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 7 cut(s) 415, 427, 688, 691, 699, 958, 1113
PleI GAGTC 3 cut(s) 44, 295, 613
PpsI GAGTC 3 cut(s) 44, 295, 613
PshBI ATTAAT 1 cut(s) 1077
Psp6I CCWGG 2 cut(s) 190, 971
PspFI CCCAGC 1 cut(s) 329
PspGI CCWGG 2 cut(s) 190, 971
PspN4I GGNNCC 2 cut(s) 606, 838
PspPI GGNCC 3 cut(s) 122, 539, 604
PsrI GAACNNNNNNTAC 2 cut(s) 93, 125
PstI CTGCAG 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 692
PsuI RGATCY 1 cut(s) 932
PsyI GACNNNGTC 1 cut(s) 152
PvuII CAGCTG 3 cut(s) 245, 329, 1111
RsaI GTAC 1 cut(s) 672
RsaNI GTAC 1 cut(s) 671
RseI CAYNNNNRTG 1 cut(s) 725
SaqAI TTAA 6 cut(s) 342, 351, 363, 438, 1077, 1120
SatI GCNGC 7 cut(s) 414, 426, 687, 690, 698, 957, 1112
Sau3AI GATC 3 cut(s) 768, 818, 932
Sau96I GGNCC 3 cut(s) 122, 539, 604
SchI GAGTC 3 cut(s) 44, 295, 613
ScrFI CCNGG 3 cut(s) 192, 494, 973
SfaNI GCATC 3 cut(s) 255, 724, 894
SfcI CTRYAG 3 cut(s) 426, 507, 1024
SinI GGWCC 2 cut(s) 122, 539
SmiMI CAYNNNNRTG 1 cut(s) 725
SmlI CTYRAG 2 cut(s) 783, 887
SmoI CTYRAG 2 cut(s) 783, 887
SphI GCATGC 2 cut(s) 338, 401
SseBI AGGCCT 1 cut(s) 435
SsiI CCGC 2 cut(s) 357, 689
SspMI CTAG 4 cut(s) 422, 519, 779, 1034
StuI AGGCCT 1 cut(s) 435
StyD4I CCNGG 3 cut(s) 190, 492, 971
TaaI ACNGT 1 cut(s) 808
TaiI ACGT 1 cut(s) 846
TaqI TCGA 2 cut(s) 144, 375
TatI WGTACW 1 cut(s) 670
TauI GCSGC 1 cut(s) 692
TfiI GAWTC 4 cut(s) 205, 741, 796, 831
Tru1I TTAA 6 cut(s) 342, 351, 363, 438, 1077, 1120
Tru9I TTAA 6 cut(s) 342, 351, 363, 438, 1077, 1120
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 2 cut(s) 476, 996
TseI GCWGC 6 cut(s) 413, 425, 686, 697, 956, 1111
Tsp45I GTSAC 2 cut(s) 476, 996
TspDTI ATGAA 3 cut(s) 45, 197, 562
TspGWI ACGGA 1 cut(s) 675
TspRI CASTG 1 cut(s) 223
Tth111I GACNNNGTC 1 cut(s) 152
VpaK11BI GGWCC 2 cut(s) 122, 539
VspI ATTAAT 1 cut(s) 1077
XapI RAATTY 3 cut(s) 281, 322, 763
XceI RCATGY 3 cut(s) 90, 338, 401
XmiI GTMKAC 1 cut(s) 156
XspI CTAG 4 cut(s) 422, 519, 779, 1034
Zsp2I ATGCAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.