Rh4AG120700

cla,cla1,def,dxps2,dxs

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
26036093 .. 26036423
331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG120700.1

Sequence Viewer

Length: 246 bp
ATGGCTGATGCACGATTCTGCAAGCCTCTTGATGGAAATTTGATCAGACAGCTAGCTCAAGAACATGAGATTCTCATTACCATAGAAGAAGGATCAATCGGAGGATTCGGCTCCCACGTTTACCAATTCTTTGGCTTGAATGGATTACTTGATGGCAAGCTCAAGTGGAGGGCTATGATGCTTCCTGACAGATATATTGAACATGGCATGGATCTCAGAAAGACCAAACTGAAGCAGCAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.

Protein Analysis

81

Amino Acids

9.25

Weight (kDa)

7.92

Isoelectric Point (pI)

29.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transketolase_C PF02780 3 - 70 1.3e-13 Transketolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 100, 219
AcsI RAATTY 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 2 cut(s) 139, 200
AluBI AGCT 3 cut(s) 52, 56, 160
AluI AGCT 3 cut(s) 52, 56, 160
AlwI GGATC 2 cut(s) 100, 219
ApeKI GCWGC 1 cut(s) 235
ApoI RAATTY 1 cut(s) 37
AsuNHI GCTAGC 1 cut(s) 52
BccI CCATC 2 cut(s) 26, 146
BclI TGATCA 1 cut(s) 42
BfaI CTAG 1 cut(s) 53
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 112
BmsI GCATC 1 cut(s) 168
BmtI GCTAGC 1 cut(s) 56
BpuEI CTTGAG 2 cut(s) 42, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 32
Bsp143I GATC 3 cut(s) 42, 92, 211
BspCNI CTCAG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 112
BspOI GCTAGC 1 cut(s) 56
BspPI GGATC 2 cut(s) 100, 219
BssMI GATC 3 cut(s) 42, 92, 211
BstC8I GCNNGC 3 cut(s) 23, 54, 158
BstDEI CTNAG 1 cut(s) 215
BstKTI GATC 3 cut(s) 45, 95, 214
BstMBI GATC 3 cut(s) 42, 92, 211
BstX2I RGATCY 1 cut(s) 211
BstXI CCANNNNNNTGG 1 cut(s) 131
BstYI RGATCY 1 cut(s) 211
Cac8I GCNNGC 3 cut(s) 23, 54, 158
CviAII CATG 3 cut(s) 65, 203, 208
CviJI RGCY 8 cut(s) 5, 25, 52, 56, 111, 135, 160, 173
CviKI_1 RGCY 8 cut(s) 5, 25, 52, 56, 111, 135, 160, 173
DdeI CTNAG 1 cut(s) 215
DpnI GATC 3 cut(s) 44, 94, 213
DpnII GATC 3 cut(s) 42, 92, 211
FaeI CATG 3 cut(s) 68, 206, 211
FaiI YATR 6 cut(s) 66, 83, 176, 195, 204, 209
FatI CATG 3 cut(s) 64, 202, 207
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 1 cut(s) 53
GluI GCNGC 1 cut(s) 236
Hin1II CATG 3 cut(s) 68, 206, 211
HinfI GANTC 3 cut(s) 15, 70, 105
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 3 cut(s) 47, 101, 218
Hpy188III TCNNGA 3 cut(s) 29, 59, 185
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 11, 21
HpyF3I CTNAG 1 cut(s) 215
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 3 cut(s) 68, 206, 211
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 3 cut(s) 42, 92, 211
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 2 cut(s) 198, 224
LweI GCATC 1 cut(s) 168
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 117
MalI GATC 3 cut(s) 44, 94, 213
MboI GATC 3 cut(s) 42, 92, 211
MboII GAAGA 1 cut(s) 98
MflI RGATCY 1 cut(s) 211
MluCI AATT 2 cut(s) 37, 125
MnlI CCTC 3 cut(s) 36, 95, 162
NdeII GATC 3 cut(s) 42, 92, 211
NheI GCTAGC 1 cut(s) 52
NlaIII CATG 3 cut(s) 68, 206, 211
NlaIV GGNNCC 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 3 cut(s) 15, 70, 105
PkrI GCNGC 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 112
PsuI RGATCY 1 cut(s) 211
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 3 cut(s) 42, 92, 211
SetI ASST 4 cut(s) 54, 58, 120, 162
SfaNI GCATC 1 cut(s) 168
SmlI CTYRAG 2 cut(s) 57, 161
SmoI CTYRAG 2 cut(s) 57, 161
Sse9I AATT 2 cut(s) 37, 125
SspMI CTAG 1 cut(s) 53
TaiI ACGT 1 cut(s) 120
TasI AATT 2 cut(s) 37, 125
TfiI GAWTC 3 cut(s) 15, 70, 105
TseI GCWGC 1 cut(s) 235
XapI RAATTY 1 cut(s) 37
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.