pycom01g06900

1-deoxy-D-xylulose-5-phosphate synthase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000901
Physical Location & Seq
Forward (+)
7441128 .. 7442452
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g06900.4

Sequence Viewer

Length: 735 bp
ATGGTGGTCTTCAGCGTATTCGTTAGACCGAATCAGTACCTGTCTTCATGCCTCATTCCTCCTCCACCTCCAAAACTGAATCACAGTTGCAGACAACAGCTCTCTGTTAAGGCATCTGCTGGTAACTCAGATGGTGAGGACTGCAAGTTGATCAGAAAAGAGAAAGATGGATGGAACGTTCACAGATCGATCGATTACTCCGGCGAAAAACCAGGCACCCCATTGCTGGACACAGTCAAATACCCAGCTCACATGAAGAATCTCTCCACAGAGGATCTTGAACAACTTGCAGCAGAGCTGAGAGTAGATATCGTTTACAGCGTTTCACAGTCAGGTGGGCATCTCAGTTCAAGCTTAGGTGTGGTGGAGCTGGCAGTGGCACTCCATCATGTGTTCAACACGCCTGACGACAAGATCATATGGGATGTTGGTCATCAGGCATATCCTCATAAAATTCTTACAGGAAGGAGGTCCAAGATGCACACAGTTAGGAAAACTTCAGGTCTTGCCGGTTTCCCTAAAAGGGATGAGAGCGTTTATGATGCTTTCGGTGCAGGCCACAGTTCTACAAGCATTTCTGCTGGTTTAGGCATGGCAGTTGCAAGAGACCTACTTGGGAAGAATAACAATATCATTTCAGTGATTGGAGATGGAGCCATGACTGCAGGGCAGGCATACGAAGCCATGAATAACGCAGGATACCTTGATTCTAACCTCGATCGTCATATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00730 ko00900 ko01100 ko01110 ko01130 map00730 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
DXP_synthase_N Transket_pyr Transketolase_C

Protein Analysis

245

Amino Acids

26.48

Weight (kDa)

6.83

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 215
AclI AACGTT 1 cut(s) 177
AclWI GGATC 1 cut(s) 282
AcsI RAATTY 1 cut(s) 453
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 226, 523
AgsI TTSAA 4 cut(s) 281, 351, 397, 731
AjnI CCWGG 1 cut(s) 211
AloI GAACNNNNNNTCC 2 cut(s) 162, 194
AluBI AGCT 5 cut(s) 100, 248, 298, 354, 370
AluI AGCT 5 cut(s) 100, 248, 298, 354, 370
Alw26I GTCTC 1 cut(s) 600
AlwI GGATC 1 cut(s) 282
AlwNI CAGNNNCTG 1 cut(s) 40
AoxI GGCC 1 cut(s) 556
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 453
AspS9I GGNCC 1 cut(s) 471
AsuHPI GGTGA 1 cut(s) 146
AvaII GGWCC 1 cut(s) 471
BanI GGYRCC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 302
BccI CCATC 5 cut(s) 125, 161, 165, 393, 644
BciT130I CCWGG 1 cut(s) 213
BciVI GTATCC 1 cut(s) 692
BclI TGATCA 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 600
BfmI CTRYAG 1 cut(s) 663
BfuI GTATCC 1 cut(s) 692
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 471
BmgT120I GGNCC 1 cut(s) 471
BmiI GGNNCC 2 cut(s) 217, 655
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 4 cut(s) 122, 349, 468, 532
BpiI GAAGAC 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 355
Bsa29I ATCGAT 2 cut(s) 188, 192
BsaI GGTCTC 1 cut(s) 600
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 523
Bse118I RCCGGY 1 cut(s) 509
Bse3DI GCAATG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 213
BseCI ATCGAT 2 cut(s) 188, 192
BseGI GGATG 3 cut(s) 176, 430, 532
BseLI CCNNNNNNNGG 2 cut(s) 226, 523
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 3 cut(s) 141, 290, 358
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 302
BseYI CCCAGC 1 cut(s) 244
BsgI GTGCAG 1 cut(s) 573
Bsh1285I CGRYCG 2 cut(s) 192, 721
BshFI GGCC 1 cut(s) 558
BshNI GGYRCC 1 cut(s) 215
BshVI ATCGAT 2 cut(s) 188, 192
BsiEI CGRYCG 2 cut(s) 192, 721
BsiSI CCGG 2 cut(s) 201, 510
BslI CCNNNNNNNGG 2 cut(s) 226, 523
BsmAI GTCTC 1 cut(s) 600
BsnI GGCC 1 cut(s) 558
Bso31I GGTCTC 1 cut(s) 600
Bsp143I GATC 6 cut(s) 150, 185, 189, 274, 414, 718
BspANI GGCC 1 cut(s) 558
BspCNI CTCAG 3 cut(s) 140, 291, 357
BspDI ATCGAT 2 cut(s) 188, 192
BspLI GGNNCC 2 cut(s) 217, 655
BspMAI CTGCAG 1 cut(s) 667
BspPI GGATC 1 cut(s) 282
BspT107I GGYRCC 1 cut(s) 215
BspTNI GGTCTC 1 cut(s) 600
BsrDI GCAATG 1 cut(s) 221
BsrFI RCCGGY 1 cut(s) 509
BssAI RCCGGY 1 cut(s) 509
BssMI GATC 6 cut(s) 150, 185, 189, 274, 414, 718
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 5 cut(s) 86, 235, 330, 487, 563
BstC8I GCNNGC 3 cut(s) 372, 556, 672
BstDEI CTNAG 4 cut(s) 127, 299, 344, 355
BstF5I GGATG 3 cut(s) 176, 430, 532
BstKTI GATC 6 cut(s) 153, 188, 192, 277, 417, 721
BstMAI GTCTC 1 cut(s) 600
BstMBI GATC 6 cut(s) 150, 185, 189, 274, 414, 718
BstMCI CGRYCG 2 cut(s) 192, 721
BstMWI GCNNNNNNNGC 4 cut(s) 551, 662, 671, 680
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 663
BstV1I GCAGC 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
Bsu15I ATCGAT 2 cut(s) 188, 192
BsuI GTATCC 1 cut(s) 692
BsuRI GGCC 1 cut(s) 558
BsuTUI ATCGAT 2 cut(s) 188, 192
BtsCI GGATG 3 cut(s) 176, 430, 532
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 381, 645
Cac8I GCNNGC 3 cut(s) 372, 556, 672
CaiI CAGNNNCTG 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 509
Cfr13I GGNCC 1 cut(s) 471
ClaI ATCGAT 2 cut(s) 188, 192
Csp6I GTAC 1 cut(s) 37
CviAII CATG 6 cut(s) 48, 253, 389, 592, 658, 685
CviJI RGCY 8 cut(s) 100, 248, 298, 354, 370, 558, 656, 683
CviKI_1 RGCY 8 cut(s) 100, 248, 298, 354, 370, 558, 656, 683
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 4 cut(s) 127, 299, 344, 355
DpnI GATC 6 cut(s) 152, 187, 191, 276, 416, 720
DpnII GATC 6 cut(s) 150, 185, 189, 274, 414, 718
Eco31I GGTCTC 1 cut(s) 600
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 471
Eco57I CTGAAG 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 211
EcoRV GATATC 1 cut(s) 310
FaeI CATG 6 cut(s) 51, 256, 392, 595, 661, 688
FatI CATG 6 cut(s) 47, 252, 388, 591, 657, 684
FauNDI CATATG 1 cut(s) 419
FbaI TGATCA 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 291
FokI GGATG 3 cut(s) 183, 437, 539
Fsp4HI GCNGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 291
GsaI CCCAGC 1 cut(s) 248
HaeIII GGCC 1 cut(s) 558
HapII CCGG 2 cut(s) 201, 510
Hin1II CATG 6 cut(s) 51, 256, 392, 595, 661, 688
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 4 cut(s) 31, 79, 259, 707
HpaII CCGG 2 cut(s) 201, 510
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 2 cut(s) 181, 316
Hpy188I TCNGA 2 cut(s) 130, 155
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 2 cut(s) 181, 316
HpyAV CCTTC 1 cut(s) 459
HpyCH4III ACNGT 5 cut(s) 86, 235, 330, 487, 563
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 7 cut(s) 90, 144, 290, 481, 554, 602, 665
HpyF10VI GCNNNNNNNGC 4 cut(s) 551, 662, 671, 680
HpyF3I CTNAG 4 cut(s) 127, 299, 344, 355
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 6 cut(s) 51, 256, 392, 595, 661, 688
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 6 cut(s) 150, 185, 189, 274, 414, 718
LmnI GCTCC 2 cut(s) 367, 653
Lsp1109I GCAGC 1 cut(s) 302
LweI GCATC 4 cut(s) 122, 349, 468, 532
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 122
MalI GATC 6 cut(s) 152, 187, 191, 276, 416, 720
MboI GATC 6 cut(s) 150, 185, 189, 274, 414, 718
MboII GAAGA 3 cut(s) 36, 268, 631
MflI RGATCY 1 cut(s) 274
MluCI AATT 1 cut(s) 453
MnlI CCTC 9 cut(s) 62, 69, 72, 78, 130, 265, 456, 462, 725
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 638
MspI CCGG 2 cut(s) 201, 510
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 4 cut(s) 551, 662, 671, 680
NdeI CATATG 1 cut(s) 419
NdeII GATC 6 cut(s) 150, 185, 189, 274, 414, 718
NlaIII CATG 6 cut(s) 51, 256, 392, 595, 661, 688
NlaIV GGNNCC 2 cut(s) 217, 655
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PfeI GAWTC 4 cut(s) 31, 79, 259, 707
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 292
Ple19I CGATCG 2 cut(s) 192, 721
Psp1406I AACGTT 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 217, 655
PspPI GGNCC 1 cut(s) 471
PstI CTGCAG 1 cut(s) 667
PstNI CAGNNNCTG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 274
PsyI GACNNNGTC 1 cut(s) 233
PvuI CGATCG 2 cut(s) 192, 721
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 638
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 6 cut(s) 150, 185, 189, 274, 414, 718
Sau96I GGNCC 1 cut(s) 471
ScrFI CCNGG 1 cut(s) 213
SfaNI GCATC 4 cut(s) 122, 349, 468, 532
SfcI CTRYAG 1 cut(s) 663
SinI GGWCC 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 638
Sse9I AATT 1 cut(s) 453
StyD4I CCNGG 1 cut(s) 211
TaaI ACNGT 5 cut(s) 86, 235, 330, 487, 563
TaiI ACGT 1 cut(s) 180
TaqI TCGA 3 cut(s) 188, 192, 717
TaqII GACCGA 1 cut(s) 43
TasI AATT 1 cut(s) 453
TfiI GAWTC 4 cut(s) 31, 79, 259, 707
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 2 cut(s) 381, 645
TseI GCWGC 1 cut(s) 290
TspDTI ATGAA 3 cut(s) 36, 269, 701
TspRI CASTG 2 cut(s) 381, 645
Tth111I GACNNNGTC 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 471
XapI RAATTY 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.