Rh4DG113600

cla,cla1,def,dxps2,dxs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000901
Physical Location & Seq
Forward (+)
17957663 .. 17959336
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG113600.1

Sequence Viewer

Length: 783 bp
ATGCTGCAATGGGAAGTGGTGCTAAACTCACTTGTTCCAGAAACAATCCCAGACAGATGTTTCGATGTTGGGATAGCAGAACAGCATGCTATAACCTTTGCTGCTGGCCTAGCTGCAGAAGGCCTTAAACCTCTTTGTGCTATTTCCTCTTCGTTTGTTCAGAGTGGTTATGATCAGCTCCCGGTGAGATTTGCTATAGACAAGGCTAGTTTTGTCGGTGCAGATGGTCCACCACATTGGGGAGCTTTTGATACAACTTTCATGGCTTGTTTACCTAACATGGTGGTCATGGCCCCTTCTTCTGAGACTGAACTTAGACAACAAAGGAACCCCATTGGAGCGGCTGAGCTGCTTCAAGTTCTCAACATCTCCACAGCTATGGCTGATGAACGATTCTGCAAGCCTCTTGATGGAAATTTGATCAGACAGCTAGCTCAAGAACATGAGATTCTCATTACCGTAGAAGAAGGATCAATCGGAGGATTCGGCTCCCACGTTTCCCAATTCTTTGGCTTGAATGGATTACTTGATGGCAAGCTCAACTGGAGGGCTATGATGCTTCCTGACAGATATATTGAACATGGATCTCAGAAAGACCAAACTGAAGCAGCAGGGTTGAGTTCCAGGCATATTGCAACAACTGTGTTGTCACCTTCTCAACTTTCAGACCAATACTACAGAGAGCTAGTAATCACCTTCTCAGCTTTCAGACCAATCTGTATAGTAATTAATAGTCCTCTAATAGACGACAAGGCGCTCCAGCTGCTAATTTTAAGAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00730 ko00900 ko01100 ko01110 ko01130 map00730 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
DXP_synthase_N Transket_pyr Transketolase_C

Protein Analysis

260

Amino Acids

28.46

Weight (kDa)

4.92

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transket_pyr PF02779 17 - 107 3.1e-18 Transketolase, pyrimidine binding domain
Transketolase_C PF02780 113 - 211 4.3e-19 Transketolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 341
AciI CCGC 1 cut(s) 341
AclWI GGATC 2 cut(s) 478, 592
AcsI RAATTY 1 cut(s) 415
AcuI CTGAAG 1 cut(s) 624
AfiI CCNNNNNNNGG 2 cut(s) 239, 410
AgsI TTSAA 3 cut(s) 356, 517, 578
AjnI CCWGG 1 cut(s) 623
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 2 cut(s) 478, 592
AoxI GGCC 3 cut(s) 106, 121, 291
ApeKI GCWGC 6 cut(s) 4, 101, 113, 349, 608, 763
ApoI RAATTY 1 cut(s) 415
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AseI ATTAAT 1 cut(s) 729
AspLEI GCGC 1 cut(s) 757
AspS9I GGNCC 2 cut(s) 227, 292
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 3 cut(s) 196, 642, 685
AsuNHI GCTAGC 1 cut(s) 430
AvaII GGWCC 1 cut(s) 227
BbvI GCAGC 5 cut(s) 88, 100, 336, 620, 750
BccI CCATC 3 cut(s) 218, 404, 524
BciT130I CCWGG 1 cut(s) 625
BclI TGATCA 2 cut(s) 172, 420
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 4 cut(s) 110, 207, 431, 686
BfmI CTRYAG 3 cut(s) 114, 195, 676
BfoI RGCGCY 1 cut(s) 758
BisI GCNGC 7 cut(s) 5, 102, 114, 342, 350, 609, 764
BlpI GCTNAGC 1 cut(s) 345
BlsI GCNGC 7 cut(s) 6, 103, 115, 343, 351, 610, 765
Bme1390I CCNGG 2 cut(s) 182, 625
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 2 cut(s) 227, 292
BmiI GGNNCC 3 cut(s) 294, 329, 490
BmrFI CCNGG 2 cut(s) 182, 625
BmsI GCATC 1 cut(s) 546
BmtI GCTAGC 1 cut(s) 434
BpmI CTGGAG 2 cut(s) 565, 743
Bpu1102I GCTNAGC 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 420
BpuMI CCSGG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 410
Bse1I ACTGG 1 cut(s) 548
Bse3DI GCAATG 1 cut(s) 14
BseBI CCWGG 1 cut(s) 625
BseLI CCNNNNNNNGG 2 cut(s) 239, 410
BseMI GCAATG 1 cut(s) 14
BseMII CTCAG 4 cut(s) 294, 336, 602, 714
BseNI ACTGG 1 cut(s) 548
BseXI GCAGC 5 cut(s) 88, 100, 336, 620, 750
BsgI GTGCAG 1 cut(s) 240
BshFI GGCC 3 cut(s) 108, 123, 293
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 2 cut(s) 239, 410
BsmAI GTCTC 1 cut(s) 299
BsnI GGCC 3 cut(s) 108, 123, 293
Bsp143I GATC 4 cut(s) 172, 420, 470, 584
Bsp1720I GCTNAGC 1 cut(s) 345
BspACI CCGC 1 cut(s) 341
BspANI GGCC 3 cut(s) 108, 123, 293
BspCNI CTCAG 4 cut(s) 295, 337, 601, 713
BspLI GGNNCC 3 cut(s) 294, 329, 490
BspMAI CTGCAG 1 cut(s) 118
BspOI GCTAGC 1 cut(s) 434
BspPI GGATC 2 cut(s) 478, 592
BsrBI CCGCTC 1 cut(s) 341
BsrDI GCAATG 1 cut(s) 14
BsrI ACTGG 1 cut(s) 548
BssMI GATC 4 cut(s) 172, 420, 470, 584
Bst2UI CCWGG 1 cut(s) 625
Bst4CI ACNGT 2 cut(s) 460, 643
Bst6I CTCTTC 1 cut(s) 154
BstC8I GCNNGC 5 cut(s) 87, 106, 401, 432, 536
BstDEI CTNAG 5 cut(s) 303, 314, 345, 588, 700
BstH2I RGCGCY 1 cut(s) 758
BstHHI GCGC 1 cut(s) 757
BstKTI GATC 4 cut(s) 175, 423, 473, 587
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 4 cut(s) 172, 420, 470, 584
BstMWI GCNNNNNNNGC 2 cut(s) 110, 763
BstNI CCWGG 1 cut(s) 625
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 2 cut(s) 180, 623
BstSFI CTRYAG 3 cut(s) 114, 195, 676
BstV1I GCAGC 5 cut(s) 88, 100, 336, 620, 750
BstX2I RGATCY 1 cut(s) 584
BstXI CCANNNNNNTGG 3 cut(s) 237, 379, 509
BstYI RGATCY 1 cut(s) 584
BsuRI GGCC 3 cut(s) 108, 123, 293
Cac8I GCNNGC 5 cut(s) 87, 106, 401, 432, 536
CfoI GCGC 1 cut(s) 757
Cfr13I GGNCC 2 cut(s) 227, 292
CviAII CATG 6 cut(s) 86, 262, 280, 289, 443, 581
DdeI CTNAG 5 cut(s) 303, 314, 345, 588, 700
DpnI GATC 4 cut(s) 174, 422, 472, 586
DpnII GATC 4 cut(s) 172, 420, 470, 584
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Eco147I AGGCCT 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 624
EcoRII CCWGG 1 cut(s) 623
FaeI CATG 6 cut(s) 89, 265, 283, 292, 446, 584
FatI CATG 6 cut(s) 85, 261, 279, 288, 442, 580
FbaI TGATCA 2 cut(s) 172, 420
Fnu4HI GCNGC 7 cut(s) 5, 102, 114, 342, 350, 609, 764
Fsp4HI GCNGC 7 cut(s) 5, 102, 114, 342, 350, 609, 764
FspBI CTAG 4 cut(s) 110, 207, 431, 686
GlaI GCGC 1 cut(s) 756
GluI GCNGC 7 cut(s) 5, 102, 114, 342, 350, 609, 764
GsuI CTGGAG 2 cut(s) 565, 743
HaeII RGCGCY 1 cut(s) 758
HaeIII GGCC 3 cut(s) 108, 123, 293
HapII CCGG 1 cut(s) 182
HhaI GCGC 1 cut(s) 757
Hin1II CATG 6 cut(s) 89, 265, 283, 292, 446, 584
Hin6I GCGC 1 cut(s) 755
HinP1I GCGC 1 cut(s) 755
HinfI GANTC 3 cut(s) 393, 448, 483
HpaII CCGG 1 cut(s) 182
HphI GGTGA 3 cut(s) 196, 642, 685
Hpy166II GTNNAC 2 cut(s) 230, 272
Hpy188I TCNGA 7 cut(s) 162, 304, 425, 479, 591, 667, 710
Hpy188III TCNNGA 4 cut(s) 38, 407, 437, 563
Hpy8I GTNNAC 2 cut(s) 230, 272
HpyAV CCTTC 5 cut(s) 113, 306, 461, 663, 706
HpyCH4III ACNGT 2 cut(s) 460, 643
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 5 cut(s) 7, 116, 221, 399, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 763
HpyF3I CTNAG 5 cut(s) 303, 314, 345, 588, 700
HpySE526I ACGT 1 cut(s) 495
Hsp92II CATG 6 cut(s) 89, 265, 283, 292, 446, 584
HspAI GCGC 1 cut(s) 755
Ksp22I TGATCA 2 cut(s) 172, 420
Kzo9I GATC 4 cut(s) 172, 420, 470, 584
LmnI GCTCC 5 cut(s) 183, 242, 338, 494, 762
Lsp1109I GCAGC 5 cut(s) 88, 100, 336, 620, 750
LweI GCATC 1 cut(s) 546
MaeI CTAG 4 cut(s) 110, 207, 431, 686
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 1 cut(s) 648
MalI GATC 4 cut(s) 174, 422, 472, 586
MbiI CCGCTC 1 cut(s) 341
MboI GATC 4 cut(s) 172, 420, 470, 584
MboII GAAGA 3 cut(s) 141, 291, 476
MflI RGATCY 1 cut(s) 584
MluCI AATT 4 cut(s) 415, 503, 726, 768
MnlI CCTC 7 cut(s) 141, 157, 414, 473, 540, 747, 770
MseI TTAA 3 cut(s) 126, 729, 773
MslI CAYNNNNRTG 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 763
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 2 cut(s) 182, 625
MvaI CCWGG 1 cut(s) 625
MwoI GCNNNNNNNGC 2 cut(s) 110, 763
NciI CCSGG 1 cut(s) 182
NdeII GATC 4 cut(s) 172, 420, 470, 584
NheI GCTAGC 1 cut(s) 430
NlaIII CATG 6 cut(s) 89, 265, 283, 292, 446, 584
NlaIV GGNNCC 3 cut(s) 294, 329, 490
NmuCI GTSAC 1 cut(s) 648
NspI RCATGY 1 cut(s) 89
PaeI GCATGC 1 cut(s) 89
PceI AGGCCT 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PfeI GAWTC 3 cut(s) 393, 448, 483
PkrI GCNGC 7 cut(s) 6, 103, 115, 343, 351, 610, 765
PshBI ATTAAT 1 cut(s) 729
Psp6I CCWGG 1 cut(s) 623
PspGI CCWGG 1 cut(s) 623
PspN4I GGNNCC 3 cut(s) 294, 329, 490
PspPI GGNCC 2 cut(s) 227, 292
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 1 cut(s) 584
PvuII CAGCTG 1 cut(s) 763
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 3 cut(s) 126, 729, 773
SatI GCNGC 7 cut(s) 5, 102, 114, 342, 350, 609, 764
Sau3AI GATC 4 cut(s) 172, 420, 470, 584
Sau96I GGNCC 2 cut(s) 227, 292
ScrFI CCNGG 2 cut(s) 182, 625
SfaNI GCATC 1 cut(s) 546
SfcI CTRYAG 3 cut(s) 114, 195, 676
SinI GGWCC 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
SphI GCATGC 1 cut(s) 89
Sse9I AATT 4 cut(s) 415, 503, 726, 768
SseBI AGGCCT 1 cut(s) 123
SsiI CCGC 1 cut(s) 341
SspMI CTAG 4 cut(s) 110, 207, 431, 686
StuI AGGCCT 1 cut(s) 123
StyD4I CCNGG 2 cut(s) 180, 623
TaaI ACNGT 2 cut(s) 460, 643
TaiI ACGT 1 cut(s) 498
TaqI TCGA 1 cut(s) 63
TasI AATT 4 cut(s) 415, 503, 726, 768
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 3 cut(s) 393, 448, 483
Tru1I TTAA 3 cut(s) 126, 729, 773
Tru9I TTAA 3 cut(s) 126, 729, 773
TseFI GTSAC 1 cut(s) 648
TseI GCWGC 6 cut(s) 4, 101, 113, 349, 608, 763
Tsp45I GTSAC 1 cut(s) 648
TspDTI ATGAA 2 cut(s) 250, 402
VpaK11BI GGWCC 1 cut(s) 227
VspI ATTAAT 1 cut(s) 729
XapI RAATTY 1 cut(s) 415
XceI RCATGY 1 cut(s) 89
XspI CTAG 4 cut(s) 110, 207, 431, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.