MD16G1177200.v1.1

1-deoxy-D-xylulose-5-phosphate synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000901
Physical Location & Seq
Reverse (-)
15071793 .. 15076139
4347 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1177200.v1.1.491

Sequence Viewer

Length: 2079 bp
ATGGCTCTCTGCGCATTCTCATTTCCTGCACATATCAGCAAACCAGCAGCATCTGCAGATGCTCAGAAATCCCACTTCTCTGTGGGAACACCTCTTCCATGCCCATCTCAGCAGAAGCTCAATCAGGTGATGAGAAAAGGGCCAAGTGGGATTTGTGCATCACTGTCAGAGAGAGGGGAGTATCACTCACAGAGACCTCCCACTCCTCTCTTGGACACCATCAACTATCCAATTCACATGAAAAATCTTTCTGTCAAGGAGCTTCAACAACTAGCAGATGAGCTGAGGTCTGATGTGATCTTCAATGTTTCAAAAACTGGAGGCCACCTCGGTTCAAGCCTTGGTGTTGTGGAGCTCACTGTGGCTCTTCACTATGTCTTCAATGCTCCTCAGGACAGAATCTTGTGGGATGTTGGCCATCAGTCTTACCCACACAAAATCTTGACTGGGAGGAGAGATAAGATGCACACCATGAGACAGACAAATGGATTAGCCGGCTTCACTAAGCGCTCTGAGAGCGAATACGATTGCTTTGGCACTGGTCACAGTTCCACCACCATCTCTGCAGGCTTGGGGATGGCAGTAGGAAGGGATCTAAAGGGAGGAAGCAATCATGTAGTTGCTGTAATAGGTGATGGTGCCATGACAGCAGGGCAAGCGTATGAAGCCATGAACAACGCGGGGTACCTCGACTCTGACATGATTATTATTCTTAATGACAATAAACAGGTTTCTTTACCTACCGCTAGTCTTGACGGACCCATCCCGCCGGTAGGAGCCTTGAGTAGTGCTCTCAGTAGGTTGCAATCAAACAGGCCGCTCAGAGAATTAAGAGAGGTCGCCAAAGGTGTTACTAAACAAATTGGTGGCCCTGTGCATAATCTGGCAGCAAAAGTTGATGAGTATGCTCGAGGAATGATCAGTGGTACTGGTTCTTCGCTATTTGAAGAGCTTGGACTATATTATATAGGTCCGGTCGATGGTCACAACCTAGATGATCTTATTTCCATTCTCAAAGAGGTTAAAATTACCAAAACAACAGGTCCTGTCCTGATCCACCTTATCACTGAGAAAGGCAGGGGATATCCGTATGCAGAAAAAGCGGCAGACAAGTACCATGGAGTGGCCAAATTTGATCCGGCAACTGGAAAGCAATTCAAATCAAGTGCTAGTACACAATCTTACACGACATACTTTGCAGAGGCTTTGATTGCAGAAGCTGAAGCGGACAAAGATATTGTTGCTATCCATGCTGCAATGGGAGGTGGAACGGGGATGAATCTCTTCCTCCGCCGTTTTCCAACAAGATGCTTTGATGTTGGAATAGCAGAACAGCATGCGGTTACTTTTGCTGCTGGTCTGGCCTTACATGACGTAGATTTGCAAAAGCTTCCGGTTAGATTTGCTATGGACAGAGCTGGGCTGGTCGGAGCTGATGGTCCTACGCATTCCGGGTCTTTTGATGTCACTTTCATGGCATGCCTTCCTAACATGGTGGTGATGGCCCCTTCTGATGAGGCAGAGCTTTTCGATATGGTAGCCACTGCTGCTGCCATAGATGACCGACCAAGTTGTTTCCGATATCCAAGAGGAAATGGGGTTGGCGTTGAGCTGCCACTAGGGAATAAAGGAACTCCTCTCGAGGTAGGAAAAGGAAGAATATTGATCGAAGGGGAAAGAGTTGCACTTTTGGGTTACGGAGCAGCAGTACAGAGCTGTTTGGCTGCCTCCTCTTTGGTGGAATCCCATGGTTTGCGCCTTACAGTTGCTGATGCACGATTTTGCAAACCACTGGACCGAGCTCTCATTCGCAGCCTTGCGAGGTCACATGAGTTTCTGATTACTGTGGAAGAAGGATCCATCGGAGGGTTTGGTTCTCACGTTGCTCATTTCCTGGCCCTTGATGGCCTTCTTGATGGAAAACTCAAGTGGAGACCGATTGTTCTTCCTGACCGGTACATTGACCACGGTTCCCCTGCTGATCAATTGGCCGAGGCCGGACTCACCCCTTCTCACATTGCAGCAACCGTATTCAATATGCTTGGACAAGCAAGAGAGGCCCTGGAGATAATGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00730 ko00900 ko01100 ko01110 ko01130 map00730 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
DXP_synthase_N Transket_pyr Transketolase_C

Protein Analysis

693

Amino Acids

73.96

Weight (kDa)

6.41

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DXP_synthase_N PF13292 71 - 356 8.1e-109 1-deoxy-D-xylulose-5-phosphate synthase
Transket_pyr PF02779 393 - 458 1.3e-14 Transketolase, pyrimidine binding domain
Transket_pyr PF02779 457 - 532 1.9e-18 Transketolase, pyrimidine binding domain
Transketolase_C PF02780 550 - 673 1.2e-29 Transketolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 13
Acc65I GGTACC 1 cut(s) 684
AccB1I GGYRCC 2 cut(s) 638, 684
AccB7I CCANNNNNTGG 1 cut(s) 1123
AccBSI CCGCTC 1 cut(s) 820
AccII CGCG 1 cut(s) 680
AciI CCGC 8 cut(s) 680, 744, 767, 818, 1103, 1226, 1291, 1340
AclWI GGATC 5 cut(s) 600, 1048, 1130, 1851, 1864
AcoI YGGCCR 3 cut(s) 415, 1125, 1989
AcsI RAATTY 1 cut(s) 1130
AcuI CTGAAG 1 cut(s) 1242
AfaI GTAC 6 cut(s) 686, 928, 1115, 1174, 1710, 1958
AfeI AGCGCT 1 cut(s) 509
AfiI CCNNNNNNNGG 5 cut(s) 773, 980, 1123, 1145, 1866
AgeI ACCGGT 1 cut(s) 1953
AgsI TTSAA 8 cut(s) 266, 304, 312, 336, 382, 947, 1159, 2035
AjnI CCWGG 2 cut(s) 1893, 2061
AloI GAACNNNNNNTCC 2 cut(s) 79, 111
Alw21I GWGCWC 3 cut(s) 357, 793, 1804
Alw26I GTCTC 3 cut(s) 187, 469, 1927
AlwI GGATC 5 cut(s) 600, 1048, 1130, 1851, 1864
AlwNI CAGNNNCTG 4 cut(s) 53, 1046, 1220, 1769
Ama87I CYCGRG 2 cut(s) 909, 1640
Aor51HI AGCGCT 1 cut(s) 509
ApoI RAATTY 1 cut(s) 1130
AsiGI ACCGGT 1 cut(s) 1953
Asp700I GAANNNNTTC 1 cut(s) 1283
Asp718I GGTACC 1 cut(s) 684
AspLEI GCGC 3 cut(s) 14, 510, 1758
AsuC2I CCSGG 1 cut(s) 1453
AsuHPI GGTGA 4 cut(s) 139, 644, 1510, 1996
AvaI CYCGRG 2 cut(s) 909, 1640
AvaII GGWCC 5 cut(s) 758, 971, 1043, 1439, 1795
AxyI CCTNAGG 1 cut(s) 390
BalI TGGCCA 2 cut(s) 417, 1127
BamHI GGATCC 1 cut(s) 1856
BanI GGYRCC 2 cut(s) 638, 684
BanII GRGCYC 2 cut(s) 357, 1804
BarI GAAGNNNNNNTAC 2 cut(s) 919, 951
BbsI GAAGAC 1 cut(s) 370
Bbv12I GWGCWC 3 cut(s) 357, 793, 1804
BbvCI CCTCAGC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 1278
BciT130I CCWGG 2 cut(s) 1895, 2063
BclI TGATCA 2 cut(s) 918, 1981
BcnI CCSGG 1 cut(s) 1453
BcoDI GTCTC 3 cut(s) 187, 469, 1927
BfaI CTAG 5 cut(s) 272, 747, 992, 1170, 1619
BfmI CTRYAG 2 cut(s) 54, 564
BfoI RGCGCY 1 cut(s) 511
Bme1390I CCNGG 3 cut(s) 1453, 1895, 2063
Bme18I GGWCC 5 cut(s) 758, 971, 1043, 1439, 1795
BmeT110I CYCGRG 2 cut(s) 909, 1640
BmiI GGNNCC 7 cut(s) 640, 686, 760, 778, 1506, 1858, 1972
BmrFI CCNGG 3 cut(s) 1453, 1895, 2063
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 6 cut(s) 49, 59, 167, 453, 1298, 1762
BmuI ACTGGG 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 370
BplI GAGNNNNNCTC 6 cut(s) 170, 202, 312, 344, 775, 807
BpmI CTGGAG 1 cut(s) 339
Bpu10I CCTNAGC 1 cut(s) 284
BpuEI CTTGAG 2 cut(s) 802, 1910
BpuMI CCSGG 1 cut(s) 1453
BsaI GGTCTC 2 cut(s) 187, 1927
BsaJI CCNNGG 7 cut(s) 328, 340, 1117, 1747, 1966, 1992, 2061
BsaWI WCCGGW 3 cut(s) 973, 1393, 1953
BsaXI ACNNNNNCTCC 3 cut(s) 1692, 1722, 2057
Bsc4I CCNNNNNNNGG 5 cut(s) 773, 980, 1123, 1145, 1866
Bse118I RCCGGY 3 cut(s) 494, 769, 1953
Bse1I ACTGG 6 cut(s) 322, 451, 544, 934, 1150, 1797
Bse21I CCTNAGG 1 cut(s) 390
Bse3DI GCAATG 2 cut(s) 1263, 2016
BseBI CCWGG 2 cut(s) 1895, 2063
BseDI CCNNGG 7 cut(s) 328, 340, 1117, 1747, 1966, 1992, 2061
BseGI GGATG 4 cut(s) 415, 582, 762, 1281
BseLI CCNNNNNNNGG 5 cut(s) 773, 980, 1123, 1145, 1866
BseMI GCAATG 2 cut(s) 1263, 2016
BseMII CTCAG 8 cut(s) 77, 122, 275, 404, 504, 808, 835, 1059
BseNI ACTGG 6 cut(s) 322, 451, 544, 934, 1150, 1797
BseRI GAGGAG 5 cut(s) 195, 378, 466, 1626, 1720
BseYI CCCAGC 1 cut(s) 1418
BsgI GTGCAG 1 cut(s) 12
Bsh1236I CGCG 1 cut(s) 680
Bsh1285I CGRYCG 1 cut(s) 978
BshNI GGYRCC 2 cut(s) 638, 684
BshTI ACCGGT 1 cut(s) 1953
BsiEI CGRYCG 1 cut(s) 978
BsiHKAI GWGCWC 3 cut(s) 357, 793, 1804
BsiHKCI CYCGRG 2 cut(s) 909, 1640
BsiSI CCGG 8 cut(s) 495, 770, 974, 1139, 1394, 1452, 1954, 1998
BslI CCNNNNNNNGG 5 cut(s) 773, 980, 1123, 1145, 1866
BsmAI GTCTC 3 cut(s) 187, 469, 1927
BsmI GAATGC 2 cut(s) 14, 1447
Bso31I GGTCTC 2 cut(s) 187, 1927
BsoBI CYCGRG 2 cut(s) 909, 1640
Bsp1286I GDGCHC 3 cut(s) 357, 793, 1804
Bsp143I GATC 9 cut(s) 297, 592, 918, 997, 1053, 1135, 1665, 1856, 1981
Bsp19I CCATGG 2 cut(s) 1117, 1747
BspACI CCGC 8 cut(s) 680, 744, 767, 818, 1103, 1226, 1291, 1340
BspCNI CTCAG 8 cut(s) 76, 121, 276, 403, 505, 807, 834, 1060
BspFNI CGCG 1 cut(s) 680
BspHI TCATGA 1 cut(s) 2075
BspLI GGNNCC 7 cut(s) 640, 686, 760, 778, 1506, 1858, 1972
BspMAI CTGCAG 2 cut(s) 58, 568
BspPI GGATC 5 cut(s) 600, 1048, 1130, 1851, 1864
BspQI GCTCTTC 2 cut(s) 372, 942
BspT107I GGYRCC 2 cut(s) 638, 684
BspTNI GGTCTC 2 cut(s) 187, 1927
BsrBI CCGCTC 1 cut(s) 820
BsrDI GCAATG 2 cut(s) 1263, 2016
BsrFI RCCGGY 3 cut(s) 494, 769, 1953
BsrI ACTGG 6 cut(s) 322, 451, 544, 934, 1150, 1797
BssAI RCCGGY 3 cut(s) 494, 769, 1953
BssECI CCNNGG 7 cut(s) 328, 340, 1117, 1747, 1966, 1992, 2061
BssMI GATC 9 cut(s) 297, 592, 918, 997, 1053, 1135, 1665, 1856, 1981
BssT1I CCWWGG 3 cut(s) 340, 1117, 1747
Bst2UI CCWGG 2 cut(s) 1895, 2063
Bst4CI ACNGT 7 cut(s) 165, 361, 548, 1765, 1846, 1970, 2029
Bst6I CTCTTC 4 cut(s) 99, 372, 942, 1289
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 5 cut(s) 496, 568, 657, 1338, 1480
BstDEI CTNAG 9 cut(s) 63, 108, 284, 390, 504, 513, 794, 821, 1068
BstDSI CCRYGG 3 cut(s) 1117, 1747, 1966
BstF5I GGATG 4 cut(s) 415, 582, 762, 1281
BstFNI CGCG 1 cut(s) 680
BstH2I RGCGCY 1 cut(s) 511
BstHHI GCGC 3 cut(s) 14, 510, 1758
BstKTI GATC 9 cut(s) 300, 595, 921, 1000, 1056, 1138, 1668, 1859, 1984
BstMAI GTCTC 3 cut(s) 187, 469, 1927
BstMBI GATC 9 cut(s) 297, 592, 918, 997, 1053, 1135, 1665, 1856, 1981
BstMCI CGRYCG 1 cut(s) 978
BstNI CCWGG 2 cut(s) 1895, 2063
BstNSI RCATGY 2 cut(s) 1340, 1482
BstSCI CCNGG 3 cut(s) 1451, 1893, 2061
BstSFI CTRYAG 2 cut(s) 54, 564
BstUI CGCG 1 cut(s) 680
BstV2I GAAGAC 1 cut(s) 370
BstX2I RGATCY 2 cut(s) 592, 1856
BstYI RGATCY 2 cut(s) 592, 1856
Bsu36I CCTNAGG 1 cut(s) 390
BtgI CCRYGG 3 cut(s) 1117, 1747, 1966
BtsCI GGATG 4 cut(s) 415, 582, 762, 1281
BtsI GCAGTG 1 cut(s) 1542
BtsIMutI CAGTG 7 cut(s) 161, 357, 537, 928, 1065, 1542, 1790
Cac8I GCNNGC 5 cut(s) 496, 568, 657, 1338, 1480
CaiI CAGNNNCTG 4 cut(s) 53, 1046, 1220, 1769
CciI TCATGA 1 cut(s) 2075
CfoI GCGC 3 cut(s) 14, 510, 1758
Cfr10I RCCGGY 3 cut(s) 494, 769, 1953
Csp6I GTAC 6 cut(s) 685, 927, 1114, 1173, 1709, 1957
CspAI ACCGGT 1 cut(s) 1953
CviQI GTAC 6 cut(s) 685, 927, 1114, 1173, 1709, 1957
DdeI CTNAG 9 cut(s) 63, 108, 284, 390, 504, 513, 794, 821, 1068
DpnI GATC 9 cut(s) 299, 594, 920, 999, 1055, 1137, 1667, 1858, 1983
DpnII GATC 9 cut(s) 297, 592, 918, 997, 1053, 1135, 1665, 1856, 1981
EaeI YGGCCR 3 cut(s) 415, 1125, 1989
Eam1104I CTCTTC 4 cut(s) 99, 372, 942, 1289
EarI CTCTTC 4 cut(s) 99, 372, 942, 1289
EciI GGCGGA 1 cut(s) 1280
Ecl136II GAGCTC 2 cut(s) 355, 1802
Eco130I CCWWGG 3 cut(s) 340, 1117, 1747
Eco24I GRGCYC 2 cut(s) 357, 1804
Eco31I GGTCTC 2 cut(s) 187, 1927
Eco32I GATATC 2 cut(s) 1085, 1583
Eco47I GGWCC 5 cut(s) 758, 971, 1043, 1439, 1795
Eco47III AGCGCT 1 cut(s) 509
Eco53kI GAGCTC 2 cut(s) 355, 1802
Eco57I CTGAAG 1 cut(s) 1242
Eco81I CCTNAGG 1 cut(s) 390
Eco88I CYCGRG 2 cut(s) 909, 1640
EcoICRI GAGCTC 2 cut(s) 355, 1802
EcoO109I RGGNCCY 2 cut(s) 1043, 2059
EcoRII CCWGG 2 cut(s) 1893, 2061
EcoRV GATATC 2 cut(s) 1085, 1583
EcoT14I CCWWGG 3 cut(s) 340, 1117, 1747
EcoT38I GRGCYC 2 cut(s) 357, 1804
ErhI CCWWGG 3 cut(s) 340, 1117, 1747
FauI CCCGC 2 cut(s) 673, 774
FbaI TGATCA 2 cut(s) 918, 1981
FokI GGATG 4 cut(s) 422, 589, 749, 1288
FriOI GRGCYC 2 cut(s) 357, 1804
FspBI CTAG 5 cut(s) 272, 747, 992, 1170, 1619
FspI TGCGCA 1 cut(s) 13
GlaI GCGC 3 cut(s) 13, 509, 1757
GsaI CCCAGC 1 cut(s) 1422
GsuI CTGGAG 1 cut(s) 339
HaeII RGCGCY 1 cut(s) 511
HapII CCGG 8 cut(s) 495, 770, 974, 1139, 1394, 1452, 1954, 1998
HhaI GCGC 3 cut(s) 14, 510, 1758
Hin6I GCGC 3 cut(s) 12, 508, 1756
HinP1I GCGC 3 cut(s) 12, 508, 1756
HindIII AAGCTT 1 cut(s) 1388
HinfI GANTC 5 cut(s) 399, 692, 1279, 1742, 2001
HpaII CCGG 8 cut(s) 495, 770, 974, 1139, 1394, 1452, 1954, 1998
HphI GGTGA 4 cut(s) 139, 644, 1510, 1996
Hpy166II GTNNAC 1 cut(s) 1175
Hpy188III TCNNGA 8 cut(s) 392, 442, 752, 1051, 1640, 1913, 1949, 2076
Hpy8I GTNNAC 1 cut(s) 1175
HpyAV CCTTC 7 cut(s) 582, 1493, 1518, 1664, 1847, 1919, 2019
HpyCH4III ACNGT 7 cut(s) 165, 361, 548, 1765, 1846, 1970, 2029
HpyCH4IV ACGT 2 cut(s) 1374, 1881
HpyF3I CTNAG 9 cut(s) 63, 108, 284, 390, 504, 513, 794, 821, 1068
HpySE526I ACGT 2 cut(s) 1374, 1881
HspAI GCGC 3 cut(s) 12, 508, 1756
KpnI GGTACC 1 cut(s) 688
KroI GCCGGC 1 cut(s) 494
KroNI GCCGGC 1 cut(s) 496
Ksp22I TGATCA 2 cut(s) 918, 1981
Kzo9I GATC 9 cut(s) 297, 592, 918, 997, 1053, 1135, 1665, 1856, 1981
LguI GCTCTTC 2 cut(s) 372, 942
LmnI GCTCC 6 cut(s) 259, 352, 391, 776, 1430, 1700
LweI GCATC 6 cut(s) 49, 59, 167, 453, 1298, 1762
MaeI CTAG 5 cut(s) 272, 747, 992, 1170, 1619
MaeII ACGT 2 cut(s) 1374, 1881
MaeIII GTNAC 7 cut(s) 542, 850, 983, 1342, 1465, 1694, 1824
MalI GATC 9 cut(s) 299, 594, 920, 999, 1055, 1137, 1667, 1858, 1983
MbiI CCGCTC 1 cut(s) 820
MboI GATC 9 cut(s) 297, 592, 918, 997, 1053, 1135, 1665, 1856, 1981
MfeI CAATTG 1 cut(s) 1985
MflI RGATCY 2 cut(s) 592, 1856
MhlI GDGCHC 3 cut(s) 357, 793, 1804
MlsI TGGCCA 2 cut(s) 417, 1127
MluCI AATT 7 cut(s) 231, 827, 861, 1026, 1130, 1154, 1985
MluNI TGGCCA 2 cut(s) 417, 1127
MlyI GAGTC 2 cut(s) 686, 1995
MmeI TCCRAC 3 cut(s) 1300, 1325, 1408
Mox20I TGGCCA 2 cut(s) 417, 1127
MroNI GCCGGC 1 cut(s) 494
MroXI GAANNNNTTC 1 cut(s) 1283
MscI TGGCCA 2 cut(s) 417, 1127
MseI TTAA 3 cut(s) 714, 830, 1023
MslI CAYNNNNRTG 2 cut(s) 1472, 1496
Msp20I TGGCCA 2 cut(s) 417, 1127
MspI CCGG 8 cut(s) 495, 770, 974, 1139, 1394, 1452, 1954, 1998
MspR9I CCNGG 3 cut(s) 1453, 1895, 2063
MunI CAATTG 1 cut(s) 1985
Mva1269I GAATGC 2 cut(s) 14, 1447
MvaI CCWGG 2 cut(s) 1895, 2063
MvnI CGCG 1 cut(s) 680
NaeI GCCGGC 1 cut(s) 496
NciI CCSGG 1 cut(s) 1453
NcoI CCATGG 2 cut(s) 1117, 1747
NdeII GATC 9 cut(s) 297, 592, 918, 997, 1053, 1135, 1665, 1856, 1981
NgoMIV GCCGGC 1 cut(s) 494
NlaIV GGNNCC 7 cut(s) 640, 686, 760, 778, 1506, 1858, 1972
NmeAIII GCCGAG 1 cut(s) 2017
NmuCI GTSAC 4 cut(s) 542, 983, 1465, 1824
NsbI TGCGCA 1 cut(s) 13
NspI RCATGY 2 cut(s) 1340, 1482
PaeI GCATGC 2 cut(s) 1340, 1482
PaeR7I CTCGAG 2 cut(s) 909, 1640
PagI TCATGA 1 cut(s) 2075
PciSI GCTCTTC 2 cut(s) 372, 942
PctI GAATGC 2 cut(s) 14, 1447
PdiI GCCGGC 1 cut(s) 496
PdmI GAANNNNTTC 1 cut(s) 1283
PfeI GAWTC 3 cut(s) 399, 1279, 1742
PflMI CCANNNNNTGG 1 cut(s) 1123
PinAI ACCGGT 1 cut(s) 1953
PleI GAGTC 2 cut(s) 686, 1995
PpsI GAGTC 2 cut(s) 686, 1995
PpuMI RGGWCCY 1 cut(s) 1043
Psp124BI GAGCTC 2 cut(s) 357, 1804
Psp5II RGGWCCY 1 cut(s) 1043
Psp6I CCWGG 2 cut(s) 1893, 2061
PspFI CCCAGC 1 cut(s) 1418
PspGI CCWGG 2 cut(s) 1893, 2061
PspN4I GGNNCC 7 cut(s) 640, 686, 760, 778, 1506, 1858, 1972
PspPPI RGGWCCY 1 cut(s) 1043
PspXI VCTCGAGB 1 cut(s) 909
PstI CTGCAG 2 cut(s) 58, 568
PstNI CAGNNNCTG 4 cut(s) 53, 1046, 1220, 1769
PsuI RGATCY 2 cut(s) 592, 1856
RsaI GTAC 6 cut(s) 686, 928, 1115, 1174, 1710, 1958
RsaNI GTAC 6 cut(s) 685, 927, 1114, 1173, 1709, 1957
RseI CAYNNNNRTG 2 cut(s) 1472, 1496
SacI GAGCTC 2 cut(s) 357, 1804
SapI GCTCTTC 2 cut(s) 372, 942
SaqAI TTAA 3 cut(s) 714, 830, 1023
Sau3AI GATC 9 cut(s) 297, 592, 918, 997, 1053, 1135, 1665, 1856, 1981
SchI GAGTC 2 cut(s) 686, 1995
ScrFI CCNGG 3 cut(s) 1453, 1895, 2063
SduI GDGCHC 3 cut(s) 357, 793, 1804
SfaNI GCATC 6 cut(s) 49, 59, 167, 453, 1298, 1762
SfcI CTRYAG 2 cut(s) 54, 564
Sfr274I CTCGAG 2 cut(s) 909, 1640
SinI GGWCC 5 cut(s) 758, 971, 1043, 1439, 1795
SlaI CTCGAG 2 cut(s) 909, 1640
SmiMI CAYNNNNRTG 2 cut(s) 1472, 1496
SmlI CTYRAG 4 cut(s) 781, 909, 1640, 1925
SmoI CTYRAG 4 cut(s) 781, 909, 1640, 1925
SphI GCATGC 2 cut(s) 1340, 1482
Sse9I AATT 7 cut(s) 231, 827, 861, 1026, 1130, 1154, 1985
SsiI CCGC 8 cut(s) 680, 744, 767, 818, 1103, 1226, 1291, 1340
SspI AATATT 1 cut(s) 1662
SspMI CTAG 5 cut(s) 272, 747, 992, 1170, 1619
SstI GAGCTC 2 cut(s) 357, 1804
StyD4I CCNGG 3 cut(s) 1451, 1893, 2061
StyI CCWWGG 3 cut(s) 340, 1117, 1747
TaaI ACNGT 7 cut(s) 165, 361, 548, 1765, 1846, 1970, 2029
TaiI ACGT 2 cut(s) 1377, 1884
TaqI TCGA 6 cut(s) 690, 910, 978, 1530, 1641, 1668
TaqII GACCGA 3 cut(s) 1578, 1812, 1951
TasI AATT 7 cut(s) 231, 827, 861, 1026, 1130, 1154, 1985
TatI WGTACW 2 cut(s) 1172, 1708
TauI GCSGC 2 cut(s) 820, 1106
TfiI GAWTC 3 cut(s) 399, 1279, 1742
Tru1I TTAA 3 cut(s) 714, 830, 1023
Tru9I TTAA 3 cut(s) 714, 830, 1023
TscAI CASTG 7 cut(s) 168, 364, 544, 928, 1072, 1549, 1797
TseFI GTSAC 4 cut(s) 542, 983, 1465, 1824
Tsp45I GTSAC 4 cut(s) 542, 983, 1465, 1824
TspDTI ATGAA 5 cut(s) 254, 678, 686, 1292, 1462
TspGWI ACGGA 3 cut(s) 771, 1077, 1713
TspRI CASTG 7 cut(s) 168, 364, 544, 928, 1072, 1549, 1797
Van91I CCANNNNNTGG 1 cut(s) 1123
VpaK11BI GGWCC 5 cut(s) 758, 971, 1043, 1439, 1795
XapI RAATTY 1 cut(s) 1130
XceI RCATGY 2 cut(s) 1340, 1482
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XhoI CTCGAG 2 cut(s) 909, 1640
XmnI GAANNNNTTC 1 cut(s) 1283
XspI CTAG 5 cut(s) 272, 747, 992, 1170, 1619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.