Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004115.1

Orthogroup ID

OG0000901

Physical Location & Seq

Genomic Coordinates Forward (+)

81796 .. 83393

Gene Structure 1598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004115.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgctgcaatgggaagtggtgctaaactcacttgttccagaaacaatcccagacagatgtttcgatgttgggatagcagaacggcatgctataacctttgctgctggcctggctgcagaaggccttaaacctctttgtgctatttcctcttcgtttctacagagtgacttacaaaagctcccagtgagatttgctatagacaaggctagttttgtcggtgcagatggtccaccacattggggagcttttgatacaactttcatggcttgtttacctaacatggtggtcatggccccttcttctgagactcaacttagggatggttatagggtggccattttgggttacggaacaatagtacaaagctgtatagcagcggctgagctgcttcaagttctcaacatctccacaactatggctgatgcacgattctgcaagcctcttgatggaaatttgatcagacagctagctcaagaacatgagattctcattaccgtagaagaaggatcaatcggaggattcggctcccacgtttcccaattctttggcttgaatggattacttgatggcaagctcaagtggagggctatgatgcttcctgacagatatattgaacatggatctcagaaagaccaaactgaagcagcagggttgagttccaggcatattgcaacaactgtgttgtcaccttctcaactttcagaccaatactacagagagctagtaatcaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00730 ko00900 ko01100 ko01110 ko01130 map00730 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

DXP_synthase_N Transket_pyr Transketolase_C

Protein Analysis

244

Amino Acids

26.6

Weight (kDa)

5.2

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21500 AT3G21500 AT3G21500 AT4G15560
fragaria_vesca	FvH4_1g19340 FvH4_1g19340 FvH4_1g19340 FvH4_1g19340 FvH4_4g16950 FvH4_4g16950 FvH4_4g16950
malus_domestica	MD01G1041300.v1.1 MD13G1175400.v1.1 MD15G1309900.v1.1 MD16G1177200.v1.1
prunus_persica	Prupe.1G144100_v2.0.a1 Prupe.1G144100_v2.0.a1 Prupe.1G144100_v2.0.a1 Prupe.1G472400_v2.0.a1 Prupe.1G472400_v2.0.a1 Prupe.6G204700_v2.0.a1
pyrus_communis	pycom01g06900 pycom01g06910 pycom04g12340 pycom13g15130 pycom15g10740 pycom15g27390 pycom16g14880
rosa_chinensis	RchiOBHm_Chr2g0110711 RchiOBHm_Chr4g0403671 RchiOBHm_Chr4g0403701 RchiOBHm_Chr4g0420531
rosa_laevigata	RLG00000007753 RLG00000008956 RLG00000008960 RLG00000017835
rosa_multiflora	Rmu_co8068784.1_g000001 Rmu_sc0000389.1_g000047 Rmu_sc0001496.1_g000014 Rmu_sc0002248.1_g000052 Rmu_sc0004115.1_g000015
rosa_roxburghii	Rroxscaffold_2G00133000 Rroxscaffold_5G00348270 Rroxscaffold_5G00348360 Rroxscaffold_5G00363150
rosa_rugosa	Rorug02G0169200 Rorug04G0045300 Rorug04G0164800
rosa_samantha	Rh2BG231400 Rh2CG223700 Rh2DG227600 Rh4AG120600 Rh4AG120700 Rh4BG113400 Rh4BG113500 Rh4BG113700 Rh4BG113800 Rh4BG229100 Rh4CG129000 Rh4DG112700 Rh4DG113600
rosa_wichuraiana	Rw2G017080 Rw4G009750 Rw4G009820 Rw4G019540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	377
AclWI	GGATC	2 cut(s)	514, 628
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	2 cut(s)	239, 446
AgsI	TTSAA	3 cut(s)	392, 553, 614
AjnI	CCWGG	2 cut(s)	108, 659
AluBI	AGCT	8 cut(s)	178, 245, 366, 385, 466, 470, 574, 721
AluI	AGCT	8 cut(s)	178, 245, 366, 385, 466, 470, 574, 721
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	2 cut(s)	514, 628
AlwNI	CAGNNNCTG	1 cut(s)	380
AoxI	GGCC	4 cut(s)	106, 121, 291, 333
ApeKI	GCWGC	6 cut(s)	4, 101, 113, 374, 385, 644
ApoI	RAATTY	1 cut(s)	451
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
AspS9I	GGNCC	2 cut(s)	227, 292
AsuHPI	GGTGA	1 cut(s)	678
AsuNHI	GCTAGC	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	335
BbvI	GCAGC	5 cut(s)	88, 100, 372, 386, 656
BccI	CCATC	4 cut(s)	218, 314, 440, 560
BceAI	ACGGC	1 cut(s)	98
BciT130I	CCWGG	2 cut(s)	110, 661
BclI	TGATCA	1 cut(s)	456
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	3 cut(s)	207, 467, 722
BfmI	CTRYAG	4 cut(s)	114, 158, 195, 712
BisI	GCNGC	7 cut(s)	5, 102, 114, 375, 378, 386, 645
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	7 cut(s)	6, 103, 115, 376, 379, 387, 646
Bme1390I	CCNGG	2 cut(s)	110, 661
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	227, 292
BmiI	GGNNCC	2 cut(s)	294, 526
BmrFI	CCNGG	2 cut(s)	110, 661
BmrI	ACTGGG	1 cut(s)	176
BmsI	GCATC	2 cut(s)	412, 582
BmtI	GCTAGC	1 cut(s)	470
BmuI	ACTGGG	1 cut(s)	176
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	456, 560
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 446
Bse1I	ACTGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	110, 661
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	239, 446
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	3 cut(s)	294, 372, 638
BseNI	ACTGG	1 cut(s)	182
BseXI	GCAGC	5 cut(s)	88, 100, 372, 386, 656
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	4 cut(s)	108, 123, 293, 335
BslI	CCNNNNNNNGG	2 cut(s)	239, 446
BsmAI	GTCTC	1 cut(s)	299
BsnI	GGCC	4 cut(s)	108, 123, 293, 335
Bsp143I	GATC	3 cut(s)	456, 506, 620
Bsp1720I	GCTNAGC	1 cut(s)	381
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	4 cut(s)	108, 123, 293, 335
BspCNI	CTCAG	3 cut(s)	295, 373, 637
BspLI	GGNNCC	2 cut(s)	294, 526
BspMAI	CTGCAG	1 cut(s)	118
BspOI	GCTAGC	1 cut(s)	470
BspPI	GGATC	2 cut(s)	514, 628
BsrDI	GCAATG	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	182
BssMI	GATC	3 cut(s)	456, 506, 620
Bst2UI	CCWGG	2 cut(s)	110, 661
Bst4CI	ACNGT	2 cut(s)	496, 679
Bst6I	CTCTTC	1 cut(s)	154
BstC8I	GCNNGC	5 cut(s)	87, 106, 437, 468, 572
BstDEI	CTNAG	4 cut(s)	303, 314, 381, 624
BstF5I	GGATG	1 cut(s)	325
BstKTI	GATC	3 cut(s)	459, 509, 623
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	3 cut(s)	456, 506, 620
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	2 cut(s)	110, 661
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	108, 659
BstSFI	CTRYAG	4 cut(s)	114, 158, 195, 712
BstV1I	GCAGC	5 cut(s)	88, 100, 372, 386, 656
BstX2I	RGATCY	1 cut(s)	620
BstXI	CCANNNNNNTGG	3 cut(s)	237, 415, 545
BstYI	RGATCY	1 cut(s)	620
BsuRI	GGCC	4 cut(s)	108, 123, 293, 335
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	5 cut(s)	87, 106, 437, 468, 572
CaiI	CAGNNNCTG	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	227, 292
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	6 cut(s)	86, 262, 280, 289, 479, 617
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	4 cut(s)	303, 314, 381, 624
DpnI	GATC	3 cut(s)	458, 508, 622
DpnII	GATC	3 cut(s)	456, 506, 620
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	660
EcoRII	CCWGG	2 cut(s)	108, 659
FaeI	CATG	6 cut(s)	89, 265, 283, 292, 482, 620
FatI	CATG	6 cut(s)	85, 261, 279, 288, 478, 616
FbaI	TGATCA	1 cut(s)	456
Fnu4HI	GCNGC	7 cut(s)	5, 102, 114, 375, 378, 386, 645
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	7 cut(s)	5, 102, 114, 375, 378, 386, 645
FspBI	CTAG	3 cut(s)	207, 467, 722
GluI	GCNGC	7 cut(s)	5, 102, 114, 375, 378, 386, 645
HaeIII	GGCC	4 cut(s)	108, 123, 293, 335
Hin1II	CATG	6 cut(s)	89, 265, 283, 292, 482, 620
HinfI	GANTC	4 cut(s)	307, 429, 484, 519
HphI	GGTGA	1 cut(s)	678
Hpy166II	GTNNAC	2 cut(s)	230, 272
Hpy188I	TCNGA	5 cut(s)	304, 461, 515, 627, 703
Hpy188III	TCNNGA	4 cut(s)	38, 443, 473, 599
Hpy8I	GTNNAC	2 cut(s)	230, 272
HpyAV	CCTTC	4 cut(s)	113, 306, 497, 699
HpyCH4III	ACNGT	2 cut(s)	496, 679
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	6 cut(s)	7, 116, 221, 425, 435, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	4 cut(s)	303, 314, 381, 624
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	6 cut(s)	89, 265, 283, 292, 482, 620
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	3 cut(s)	456, 506, 620
LmnI	GCTCC	3 cut(s)	183, 242, 530
Lsp1109I	GCAGC	5 cut(s)	88, 100, 372, 386, 656
LweI	GCATC	2 cut(s)	412, 582
MaeI	CTAG	3 cut(s)	207, 467, 722
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	3 cut(s)	164, 344, 684
MalI	GATC	3 cut(s)	458, 508, 622
MboI	GATC	3 cut(s)	456, 506, 620
MboII	GAAGA	3 cut(s)	141, 291, 512
MflI	RGATCY	1 cut(s)	620
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	2 cut(s)	451, 539
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	5 cut(s)	141, 157, 450, 509, 576
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	413
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	110, 661
MvaI	CCWGG	2 cut(s)	110, 661
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	3 cut(s)	456, 506, 620
NheI	GCTAGC	1 cut(s)	466
NlaIII	CATG	6 cut(s)	89, 265, 283, 292, 482, 620
NlaIV	GGNNCC	2 cut(s)	294, 526
NmuCI	GTSAC	2 cut(s)	164, 684
NspI	RCATGY	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	89
PceI	AGGCCT	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	528
PfeI	GAWTC	3 cut(s)	429, 484, 519
PkrI	GCNGC	7 cut(s)	6, 103, 115, 376, 379, 387, 646
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp6I	CCWGG	2 cut(s)	108, 659
PspGI	CCWGG	2 cut(s)	108, 659
PspN4I	GGNNCC	2 cut(s)	294, 526
PspPI	GGNCC	2 cut(s)	227, 292
PstI	CTGCAG	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	620
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	7 cut(s)	5, 102, 114, 375, 378, 386, 645
Sau3AI	GATC	3 cut(s)	456, 506, 620
Sau96I	GGNCC	2 cut(s)	227, 292
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	2 cut(s)	110, 661
SfaNI	GCATC	2 cut(s)	412, 582
SfcI	CTRYAG	4 cut(s)	114, 158, 195, 712
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	2 cut(s)	471, 575
SmoI	CTYRAG	2 cut(s)	471, 575
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	2 cut(s)	451, 539
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	377
SspMI	CTAG	3 cut(s)	207, 467, 722
StuI	AGGCCT	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	108, 659
TaaI	ACNGT	2 cut(s)	496, 679
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	1 cut(s)	63
TasI	AATT	2 cut(s)	451, 539
TatI	WGTACW	1 cut(s)	358
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	3 cut(s)	429, 484, 519
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	2 cut(s)	164, 684
TseI	GCWGC	6 cut(s)	4, 101, 113, 374, 385, 644
Tsp45I	GTSAC	2 cut(s)	164, 684
TspDTI	ATGAA	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	451
XceI	RCATGY	1 cut(s)	89
XspI	CTAG	3 cut(s)	207, 467, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.