Rroxscaffold_5G00348360

cla,cla1,def,dxps2,dxs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000901
Physical Location & Seq
Forward (+)
20475020 .. 20476779
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00348360.1

Sequence Viewer

Length: 354 bp
ATGGGAACCGGTACTGGACTCAACTTGTTCCAGAAACAATTCGCAGACAGTTGTTTCGATGTTGGGATAACAGAACAGCATGCCATAACCTTTGCTGCTGAAGGCCTTAAACCTTTATATGGTCCACCACATTGCGAAGCCTTTGATACAACTTTCATGGCTTGTTTACCTAACATGGTGGTCATGGACCCTTCTTCTGAGACTGAACTTAGGTATATTGAACATGGATCTCAGAAAGACTTCTCAACTGAAGCAGTAGGGTTGAGTTCCAGGCATATTGTAACAACTGTGTTGTCACTTACTCGTAGAATTTCAATTCATGATCCACTAGCTGGTCCGAGTTCGTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00730 ko00900 ko01100 ko01110 ko01130 map00730 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
DXP_synthase_N Transket_pyr Transketolase_C

Protein Analysis

117

Amino Acids

12.63

Weight (kDa)

5.14

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 332
AclWI GGATC 2 cut(s) 235, 317
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 2 cut(s) 120, 270
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 2 cut(s) 119, 332
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 2 cut(s) 221, 315
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 1 cut(s) 332
AluI AGCT 1 cut(s) 332
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 2 cut(s) 235, 317
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 309
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AsiGI ACCGGT 1 cut(s) 8
Asp700I GAANNNNTTC 2 cut(s) 38, 239
AspS9I GGNCC 3 cut(s) 122, 187, 335
AvaII GGWCC 3 cut(s) 122, 187, 335
BbvI GCAGC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 329
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 3 cut(s) 122, 187, 335
BmgT120I GGNCC 3 cut(s) 122, 187, 335
BmiI GGNNCC 2 cut(s) 7, 189
BmrFI CCNGG 1 cut(s) 271
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 332
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 130
BseBI CCWGG 1 cut(s) 271
BseLI CCNNNNNNNGG 2 cut(s) 119, 332
BseMI GCAATG 1 cut(s) 130
BseMII CTCAG 2 cut(s) 189, 245
BseNI ACTGG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 1 cut(s) 105
BshTI ACCGGT 1 cut(s) 8
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 2 cut(s) 119, 332
BsmAI GTCTC 1 cut(s) 194
BsnI GGCC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 227, 322
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 2 cut(s) 190, 244
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 2 cut(s) 7, 189
BspPI GGATC 2 cut(s) 235, 317
BsrDI GCAATG 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 8
BssMI GATC 2 cut(s) 227, 322
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 2 cut(s) 50, 289
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 3 cut(s) 198, 209, 231
BstKTI GATC 2 cut(s) 230, 325
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 2 cut(s) 227, 322
BstNI CCWGG 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
BsuRI GGCC 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 81
CciI TCATGA 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 3 cut(s) 122, 187, 335
Csp6I GTAC 1 cut(s) 12
CspAI ACCGGT 1 cut(s) 8
CviAII CATG 6 cut(s) 80, 157, 175, 184, 224, 320
CviJI RGCY 4 cut(s) 105, 140, 161, 332
CviKI_1 RGCY 4 cut(s) 105, 140, 161, 332
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 3 cut(s) 198, 209, 231
DpnI GATC 2 cut(s) 229, 324
DpnII GATC 2 cut(s) 227, 322
Eco147I AGGCCT 1 cut(s) 105
Eco47I GGWCC 3 cut(s) 122, 187, 335
Eco57I CTGAAG 2 cut(s) 120, 270
EcoRII CCWGG 1 cut(s) 269
FaeI CATG 6 cut(s) 83, 160, 178, 187, 227, 323
FatI CATG 6 cut(s) 79, 156, 174, 183, 223, 319
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 329
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 105
HapII CCGG 1 cut(s) 9
Hin1II CATG 6 cut(s) 83, 160, 178, 187, 227, 323
HinfI GANTC 1 cut(s) 18
HpaII CCGG 1 cut(s) 9
Hpy166II GTNNAC 2 cut(s) 125, 167
Hpy188I TCNGA 3 cut(s) 199, 234, 339
Hpy188III TCNNGA 2 cut(s) 31, 320
Hpy8I GTNNAC 2 cut(s) 125, 167
HpyAV CCTTC 2 cut(s) 95, 201
HpyCH4III ACNGT 2 cut(s) 50, 289
HpyF3I CTNAG 3 cut(s) 198, 209, 231
Hsp92II CATG 6 cut(s) 83, 160, 178, 187, 227, 323
Kzo9I GATC 2 cut(s) 227, 322
LpnPI CCDG 5 cut(s) 22, 44, 256, 283, 318
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 2 cut(s) 280, 294
MalI GATC 2 cut(s) 229, 324
MboI GATC 2 cut(s) 227, 322
MboII GAAGA 1 cut(s) 186
MflI RGATCY 1 cut(s) 227
MluCI AATT 3 cut(s) 38, 309, 315
MlyI GAGTC 1 cut(s) 12
MroXI GAANNNNTTC 2 cut(s) 38, 239
MseI TTAA 2 cut(s) 108, 352
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 271
MvaI CCWGG 1 cut(s) 271
NdeII GATC 2 cut(s) 227, 322
NlaIII CATG 6 cut(s) 83, 160, 178, 187, 227, 323
NlaIV GGNNCC 2 cut(s) 7, 189
NmuCI GTSAC 1 cut(s) 294
NspI RCATGY 1 cut(s) 83
PaeI GCATGC 1 cut(s) 83
PagI TCATGA 1 cut(s) 319
PceI AGGCCT 1 cut(s) 105
PdmI GAANNNNTTC 2 cut(s) 38, 239
PflMI CCANNNNNTGG 1 cut(s) 332
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 7, 189
PspPI GGNCC 3 cut(s) 122, 187, 335
PsuI RGATCY 1 cut(s) 227
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 108, 352
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 227, 322
Sau96I GGNCC 3 cut(s) 122, 187, 335
SchI GAGTC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 271
SetI ASST 5 cut(s) 92, 115, 172, 215, 334
SinI GGWCC 3 cut(s) 122, 187, 335
SphI GCATGC 1 cut(s) 83
Sse9I AATT 3 cut(s) 38, 309, 315
SseBI AGGCCT 1 cut(s) 105
SspMI CTAG 1 cut(s) 329
StuI AGGCCT 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 2 cut(s) 50, 289
TaqI TCGA 1 cut(s) 57
TasI AATT 3 cut(s) 38, 309, 315
Tru1I TTAA 2 cut(s) 108, 352
Tru9I TTAA 2 cut(s) 108, 352
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 2 cut(s) 145, 308
Van91I CCANNNNNTGG 1 cut(s) 332
VpaK11BI GGWCC 3 cut(s) 122, 187, 335
XapI RAATTY 1 cut(s) 309
XceI RCATGY 1 cut(s) 83
XmnI GAANNNNTTC 2 cut(s) 38, 239
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.