Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000901

Physical Location & Seq

Genomic Coordinates Reverse (-)

43717371 .. 43717820

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008956

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGTTACGGAACAATAGTAAAATGCTGTATAGCAGCAGCTGAGCTGCTTCAAGTTCTCAACATCTCCACAACTGTGGCTGATGTACCATTCTGCAAGCCTCTTGATGGAAATTTGATCAGACAGCTAGCTCAAGAACATGAGATTCTCATTACCGTTGAAGAAGGATCAACTGGAGTATTCGGCTCCCACATTTCCCAATTCTTAGGCTTGTTTGGATTACTTGATGTGGAGGGCTATATGCTTCCTGACAGATATATTGAACATGGATCACAGAAAGACTTCTCAACTGAAGCAGCAGGGTTGAGTTCCAGGCATATTGTAACAACTGTGTTGTCACGTACTCCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00730 ko00900 ko01100 ko01110 ko01130 map00730 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

DXP_synthase_N Transket_pyr Transketolase_C

Protein Analysis

118

Amino Acids

12.65

Weight (kDa)

4.98

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transketolase_C	PF02780	2 - 107	6.3e-20	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21500 AT3G21500 AT3G21500 AT4G15560
fragaria_vesca	FvH4_1g19340 FvH4_1g19340 FvH4_1g19340 FvH4_1g19340 FvH4_4g16950 FvH4_4g16950 FvH4_4g16950
malus_domestica	MD01G1041300.v1.1 MD13G1175400.v1.1 MD15G1309900.v1.1 MD16G1177200.v1.1
prunus_persica	Prupe.1G144100_v2.0.a1 Prupe.1G144100_v2.0.a1 Prupe.1G144100_v2.0.a1 Prupe.1G472400_v2.0.a1 Prupe.1G472400_v2.0.a1 Prupe.6G204700_v2.0.a1
pyrus_communis	pycom01g06900 pycom01g06910 pycom04g12340 pycom13g15130 pycom15g10740 pycom15g27390 pycom16g14880
rosa_chinensis	RchiOBHm_Chr2g0110711 RchiOBHm_Chr4g0403671 RchiOBHm_Chr4g0403701 RchiOBHm_Chr4g0420531
rosa_laevigata	RLG00000007753 RLG00000008956 RLG00000008960 RLG00000017835
rosa_multiflora	Rmu_co8068784.1_g000001 Rmu_sc0000389.1_g000047 Rmu_sc0001496.1_g000014 Rmu_sc0002248.1_g000052 Rmu_sc0004115.1_g000015
rosa_roxburghii	Rroxscaffold_2G00133000 Rroxscaffold_5G00348270 Rroxscaffold_5G00348360 Rroxscaffold_5G00363150
rosa_rugosa	Rorug02G0169200 Rorug04G0045300 Rorug04G0164800
rosa_samantha	Rh2BG231400 Rh2CG223700 Rh2DG227600 Rh4AG120600 Rh4AG120700 Rh4BG113400 Rh4BG113500 Rh4BG113700 Rh4BG113800 Rh4BG229100 Rh4CG129000 Rh4DG112700 Rh4DG113600
rosa_wichuraiana	Rw2G017080 Rw4G009750 Rw4G009820 Rw4G019540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	175, 277
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	2 cut(s)	87, 343
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	3 cut(s)	53, 161, 263
AjnI	CCWGG	1 cut(s)	311
AleI	CACNNNNGTG	1 cut(s)	74
AluBI	AGCT	4 cut(s)	41, 46, 127, 131
AluI	AGCT	4 cut(s)	41, 46, 127, 131
AlwI	GGATC	2 cut(s)	175, 277
AlwNI	CAGNNNCTG	1 cut(s)	41
ApeKI	GCWGC	4 cut(s)	35, 38, 46, 296
ApoI	RAATTY	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	281
AsuNHI	GCTAGC	1 cut(s)	127
BbvI	GCAGC	4 cut(s)	33, 47, 50, 308
BccI	CCATC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	313
BclI	TGATCA	1 cut(s)	117
BfaI	CTAG	1 cut(s)	128
BisI	GCNGC	4 cut(s)	36, 39, 47, 297
BlpI	GCTNAGC	1 cut(s)	42
BlsI	GCNGC	4 cut(s)	37, 40, 48, 298
Bme1390I	CCNGG	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	313
BmtI	GCTAGC	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	117
BsaAI	YACGTR	2 cut(s)	341, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	313
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	4 cut(s)	33, 47, 50, 308
BslI	CCNNNNNNNGG	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	117, 167, 269
Bsp1720I	GCTNAGC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	187
BspOI	GCTAGC	1 cut(s)	131
BspPI	GGATC	2 cut(s)	175, 277
BsrI	ACTGG	1 cut(s)	178
BssMI	GATC	3 cut(s)	117, 167, 269
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	3 cut(s)	76, 157, 331
BstBAI	YACGTR	2 cut(s)	341, 351
BstC8I	GCNNGC	2 cut(s)	98, 129
BstDEI	CTNAG	2 cut(s)	42, 205
BstKTI	GATC	3 cut(s)	120, 170, 272
BstMBI	GATC	3 cut(s)	117, 167, 269
BstNI	CCWGG	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	311
BstV1I	GCAGC	4 cut(s)	33, 47, 50, 308
BstXI	CCANNNNNNTGG	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	98, 129
CaiI	CAGNNNCTG	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	86, 342
CviAII	CATG	2 cut(s)	140, 266
CviJI	RGCY	9 cut(s)	41, 46, 80, 100, 127, 131, 186, 210, 237
CviKI_1	RGCY	9 cut(s)	41, 46, 80, 100, 127, 131, 186, 210, 237
CviQI	GTAC	2 cut(s)	86, 342
DdeI	CTNAG	2 cut(s)	42, 205
DpnI	GATC	3 cut(s)	119, 169, 271
DpnII	GATC	3 cut(s)	117, 167, 269
Eco57I	CTGAAG	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	311
FaeI	CATG	2 cut(s)	143, 269
FaiI	YATR	7 cut(s)	32, 141, 240, 242, 258, 267, 318
FatI	CATG	2 cut(s)	139, 265
FbaI	TGATCA	1 cut(s)	117
Fnu4HI	GCNGC	4 cut(s)	36, 39, 47, 297
Fsp4HI	GCNGC	4 cut(s)	36, 39, 47, 297
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	4 cut(s)	36, 39, 47, 297
GsuI	CTGGAG	1 cut(s)	195
Hin1II	CATG	2 cut(s)	143, 269
HinfI	GANTC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	3 cut(s)	104, 134, 248
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	3 cut(s)	76, 157, 331
HpyCH4IV	ACGT	2 cut(s)	340, 350
HpyCH4V	TGCA	1 cut(s)	96
HpyF3I	CTNAG	2 cut(s)	42, 205
HpySE526I	ACGT	2 cut(s)	340, 350
Hsp92II	CATG	2 cut(s)	143, 269
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	117, 167, 269
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	5 cut(s)	159, 261, 285, 298, 325
Lsp1109I	GCAGC	4 cut(s)	33, 47, 50, 308
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	2 cut(s)	340, 350
MaeIII	GTNAC	3 cut(s)	5, 322, 336
MalI	GATC	3 cut(s)	119, 169, 271
MboI	GATC	3 cut(s)	117, 167, 269
MboII	GAAGA	1 cut(s)	173
MluCI	AATT	2 cut(s)	112, 200
MnlI	CCTC	2 cut(s)	111, 226
MroXI	GAANNNNTTC	1 cut(s)	281
MslI	CAYNNNNRTG	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	313
NdeII	GATC	3 cut(s)	117, 167, 269
NheI	GCTAGC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	143, 269
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	336
OliI	CACNNNNGTG	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	4 cut(s)	37, 40, 48, 298
Ppu21I	YACGTR	2 cut(s)	341, 351
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	2 cut(s)	87, 343
RsaNI	GTAC	2 cut(s)	86, 342
RseI	CAYNNNNRTG	1 cut(s)	74
SatI	GCNGC	4 cut(s)	36, 39, 47, 297
Sau3AI	GATC	3 cut(s)	117, 167, 269
ScrFI	CCNGG	1 cut(s)	313
SetI	ASST	6 cut(s)	43, 48, 129, 133, 343, 353
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	2 cut(s)	112, 200
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	311
TaaI	ACNGT	3 cut(s)	76, 157, 331
TaiI	ACGT	2 cut(s)	343, 353
TasI	AATT	2 cut(s)	112, 200
TfiI	GAWTC	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	336
TseI	GCWGC	4 cut(s)	35, 38, 46, 296
Tsp45I	GTSAC	1 cut(s)	336
TspGWI	ACGGA	1 cut(s)	24
XapI	RAATTY	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.