Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011957

Physical Location & Seq

Genomic Coordinates Reverse (-)

28881653 .. 28883720

Gene Structure 2068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0165000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAGGTTTTGTGGTGGAAAACTGGAATTGGCCATTGTGTCAACTACATCTACTACAACTACATCTGAAGTTGATGGCCTTGTAAATTCTGCTCTAGTGACCACATTTATGGCAACTCTCCAGTCTCTAATTGTTCAAACTCCAGCCGATTCCCAGTTTTTACCTCAAGATCCTTCCACTGGAGACCAGAACACTGATATTCTCCCACCGTCTGGAGCTTCACAGCCATCATTTCCAGGTTCCGCAGGTCAACCTTCACAGCTAGCTGCAAATATATATAGGAACTTTCAACTGCAGCCAGGACCTATGGTTCCTCAGACTCAAACTGGATTTTCTGGACAACACAGTGGTGGGGCTTTTCCATCGCAGGGAGGACCTACAACACCTATCACTTTACATGCGGCTCCTCAAATGCCAGCAGGACAAGCTTCACAGTATAATAATGGAAATTTCATGTCACAACAAGGGGCACTAGCTTTAGTTGAACAACCACCTAAAGAAAACAAGTTTGAGACCAAATCAGCAGTTTGGGCTGATACACTGAGTAGAGGGCTAGTTAACTTGAACATATCTGGAGCTAAGATTAATCCGTTGAATGATATTGGAATTGATTTTGATGCCATTAATCGGAAGGAAAAGAGGATGGAGAAGCAGCCAACAACTTCTGCAACATCTAGTATTTCCATGGGATCTAGTTCTGGTTTGGGCCGTGCTAGTGCAAGTGTTCTTAGGGCTCCAGCAAACCCTATGGTGGGTTCTGGTATGGGCATGGGTATGGGTCCGGGTCCGGGGATGGGGATGGGGATGGGTATGGGCATGGGTGGTGGTCCTGGTGGGGGAATGGGCATGGGTGGTTATGGAGGCATGAATCAACCCATGGGTGCCGGAATGGGAATGGGGATGAACATGGGTATGAATATGGGCATGGGCATGCAACGACCAAATGGATTACCTCCCGGGTCAAACATGCCCAATGGTTATAACCCTATGATGGGCCAAGGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

335

Amino Acids

34.08

Weight (kDa)

6.73

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21490
fragaria_vesca	FvH4_3g29750 FvH4_4g16960 FvH4_4g16960 FvH4_4g16960 FvH4_4g16960
malus_domestica	MD16G1177100.v1.1
prunus_persica	Prupe.1G144000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0420551
rosa_laevigata	RLG00000007752
rosa_multiflora	Rmu_sc0002248.1_g000057
rosa_roxburghii	Rroxscaffold_5G00363170
rosa_rugosa	Rorug04G0164800 Rorug04G0164900 Rorug04G0165000
rosa_samantha	Rh4AG226400 Rh4CG241200 Rh4DG224700
rosa_wichuraiana	Rw4G019550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	981
Acc36I	ACCTGC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	881
AccB7I	CCANNNNNTGG	1 cut(s)	212
AciI	CCGC	2 cut(s)	243, 401
AclWI	GGATC	2 cut(s)	164, 697
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	85, 448
AcuI	CTGAAG	1 cut(s)	87
AgsI	TTSAA	5 cut(s)	137, 290, 485, 565, 595
AjnI	CCWGG	3 cut(s)	235, 298, 829
AleI	CACNNNNGTG	1 cut(s)	348
AloI	GAACNNNNNNTCC	2 cut(s)	294, 326
AluBI	AGCT	6 cut(s)	218, 262, 266, 428, 476, 578
AluI	AGCT	6 cut(s)	218, 262, 266, 428, 476, 578
Alw26I	GTCTC	3 cut(s)	129, 177, 506
AlwI	GGATC	2 cut(s)	164, 697
Ama87I	CYCGRG	1 cut(s)	956
AoxI	GGCC	4 cut(s)	30, 76, 706, 994
ApeKI	GCWGC	3 cut(s)	266, 295, 652
ApoI	RAATTY	2 cut(s)	85, 448
AseI	ATTAAT	2 cut(s)	585, 624
AspS9I	GGNCC	7 cut(s)	302, 374, 706, 779, 785, 827, 994
AsuC2I	CCSGG	4 cut(s)	783, 789, 957, 958
AsuNHI	GCTAGC	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	956
AvaII	GGWCC	5 cut(s)	302, 374, 779, 785, 827
BaeGI	GKGCMC	1 cut(s)	472
BalI	TGGCCA	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	881
BanII	GRGCYC	1 cut(s)	736
BbvI	GCAGC	3 cut(s)	253, 307, 664
BccI	CCATC	8 cut(s)	68, 235, 370, 637, 787, 793, 799, 985
BceAI	ACGGC	1 cut(s)	693
BciT130I	CCWGG	3 cut(s)	237, 300, 831
BcnI	CCSGG	4 cut(s)	783, 789, 957, 958
BcoDI	GTCTC	3 cut(s)	129, 177, 506
BfaI	CTAG	7 cut(s)	95, 263, 473, 554, 675, 693, 714
BfmI	CTRYAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	236
BisI	GCNGC	4 cut(s)	267, 296, 402, 653
BlsI	GCNGC	4 cut(s)	268, 297, 403, 654
Bme1390I	CCNGG	7 cut(s)	237, 300, 783, 789, 831, 957, 958
Bme18I	GGWCC	5 cut(s)	302, 374, 779, 785, 827
BmeT110I	CYCGRG	1 cut(s)	956
BmgT120I	GGNCC	7 cut(s)	302, 374, 706, 779, 785, 827, 994
BmiI	GGNNCC	7 cut(s)	241, 312, 405, 735, 780, 786, 883
BmrFI	CCNGG	7 cut(s)	237, 300, 783, 789, 831, 957, 958
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	607
BmtI	GCTAGC	1 cut(s)	266
BmuI	ACTGGG	1 cut(s)	148
BpmI	CTGGAG	6 cut(s)	104, 126, 201, 234, 594, 720
BpuEI	CTTGAG	1 cut(s)	150
BpuMI	CCSGG	4 cut(s)	783, 789, 957, 958
BsaI	GGTCTC	2 cut(s)	177, 506
BsaJI	CCNNGG	5 cut(s)	684, 788, 876, 956, 997
Bse1I	ACTGG	5 cut(s)	27, 121, 154, 184, 331
BseBI	CCWGG	3 cut(s)	237, 300, 831
BseDI	CCNNGG	5 cut(s)	684, 788, 876, 956, 997
BseGI	GGATG	5 cut(s)	648, 798, 804, 810, 906
BseMII	CTCAG	2 cut(s)	329, 533
BseNI	ACTGG	5 cut(s)	27, 121, 154, 184, 331
BseRI	GAGGAG	1 cut(s)	396
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	3 cut(s)	253, 307, 664
BshFI	GGCC	4 cut(s)	32, 78, 708, 996
BshNI	GGYRCC	1 cut(s)	881
BsiHKCI	CYCGRG	1 cut(s)	956
BsiSI	CCGG	4 cut(s)	782, 788, 885, 957
BsmAI	GTCTC	3 cut(s)	129, 177, 506
BsnI	GGCC	4 cut(s)	32, 78, 708, 996
Bso31I	GGTCTC	2 cut(s)	177, 506
BsoBI	CYCGRG	1 cut(s)	956
Bsp1286I	GDGCHC	2 cut(s)	472, 736
Bsp143I	GATC	2 cut(s)	169, 689
Bsp19I	CCATGG	2 cut(s)	684, 876
BspACI	CCGC	2 cut(s)	243, 401
BspANI	GGCC	4 cut(s)	32, 78, 708, 996
BspCNI	CTCAG	2 cut(s)	328, 534
BspLI	GGNNCC	7 cut(s)	241, 312, 405, 735, 780, 786, 883
BspMAI	CTGCAG	1 cut(s)	297
BspMI	ACCTGC	1 cut(s)	236
BspOI	GCTAGC	1 cut(s)	266
BspPI	GGATC	2 cut(s)	164, 697
BspT107I	GGYRCC	1 cut(s)	881
BspTNI	GGTCTC	2 cut(s)	177, 506
BsrI	ACTGG	5 cut(s)	27, 121, 154, 184, 331
BssECI	CCNNGG	5 cut(s)	684, 788, 876, 956, 997
BssMI	GATC	2 cut(s)	169, 689
BssT1I	CCWWGG	3 cut(s)	684, 876, 997
Bst2UI	CCWGG	3 cut(s)	237, 300, 831
Bst4CI	ACNGT	3 cut(s)	210, 347, 435
BstC8I	GCNNGC	3 cut(s)	264, 417, 932
BstDEI	CTNAG	4 cut(s)	315, 542, 579, 728
BstDSI	CCRYGG	2 cut(s)	684, 876
BstF5I	GGATG	5 cut(s)	648, 798, 804, 810, 906
BstKTI	GATC	2 cut(s)	172, 692
BstMAI	GTCTC	3 cut(s)	129, 177, 506
BstMBI	GATC	2 cut(s)	169, 689
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 530
BstNI	CCWGG	3 cut(s)	237, 300, 831
BstNSI	RCATGY	3 cut(s)	401, 934, 970
BstSCI	CCNGG	7 cut(s)	235, 298, 781, 787, 829, 955, 956
BstSFI	CTRYAG	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	3 cut(s)	253, 307, 664
BstX2I	RGATCY	2 cut(s)	169, 689
BstXI	CCANNNNNNTGG	1 cut(s)	109
BstYI	RGATCY	2 cut(s)	169, 689
BsuRI	GGCC	4 cut(s)	32, 78, 708, 996
BtgI	CCRYGG	2 cut(s)	684, 876
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	5 cut(s)	648, 798, 804, 810, 906
BtsIMutI	CAGTG	4 cut(s)	177, 192, 352, 539
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	3 cut(s)	264, 417, 932
Cfr13I	GGNCC	7 cut(s)	302, 374, 706, 779, 785, 827, 994
Cfr9I	CCCGGG	1 cut(s)	956
DdeI	CTNAG	4 cut(s)	315, 542, 579, 728
DpnI	GATC	2 cut(s)	171, 691
DpnII	GATC	2 cut(s)	169, 689
EaeI	YGGCCR	1 cut(s)	30
Eco130I	CCWWGG	3 cut(s)	684, 876, 997
Eco24I	GRGCYC	1 cut(s)	736
Eco31I	GGTCTC	2 cut(s)	177, 506
Eco47I	GGWCC	5 cut(s)	302, 374, 779, 785, 827
Eco57I	CTGAAG	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	956
EcoO109I	RGGNCCY	2 cut(s)	302, 374
EcoRII	CCWGG	3 cut(s)	235, 298, 829
EcoT14I	CCWWGG	3 cut(s)	684, 876, 997
EcoT38I	GRGCYC	1 cut(s)	736
ErhI	CCWWGG	3 cut(s)	684, 876, 997
Fnu4HI	GCNGC	4 cut(s)	267, 296, 402, 653
FokI	GGATG	5 cut(s)	655, 805, 811, 817, 913
FriOI	GRGCYC	1 cut(s)	736
Fsp4HI	GCNGC	4 cut(s)	267, 296, 402, 653
FspBI	CTAG	7 cut(s)	95, 263, 473, 554, 675, 693, 714
GluI	GCNGC	4 cut(s)	267, 296, 402, 653
GsuI	CTGGAG	6 cut(s)	104, 126, 201, 234, 594, 720
HaeIII	GGCC	4 cut(s)	32, 78, 708, 996
HapII	CCGG	4 cut(s)	782, 788, 885, 957
HincII	GTYRAC	3 cut(s)	42, 251, 559
HindII	GTYRAC	3 cut(s)	42, 251, 559
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	3 cut(s)	149, 319, 868
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	4 cut(s)	782, 788, 885, 957
Hpy166II	GTNNAC	3 cut(s)	42, 251, 559
Hpy188I	TCNGA	3 cut(s)	67, 318, 630
Hpy188III	TCNNGA	4 cut(s)	167, 213, 336, 573
Hpy8I	GTNNAC	3 cut(s)	42, 251, 559
HpyAV	CCTTC	3 cut(s)	183, 264, 625
HpyCH4III	ACNGT	3 cut(s)	210, 347, 435
HpyCH4V	TGCA	5 cut(s)	269, 295, 668, 719, 934
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 530
HpyF3I	CTNAG	4 cut(s)	315, 542, 579, 728
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	2 cut(s)	169, 689
LmnI	GCTCC	4 cut(s)	215, 409, 575, 739
Lsp1109I	GCAGC	3 cut(s)	253, 307, 664
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	7 cut(s)	95, 263, 473, 554, 675, 693, 714
MaeIII	GTNAC	2 cut(s)	97, 456
MalI	GATC	2 cut(s)	171, 691
MboI	GATC	2 cut(s)	169, 689
MflI	RGATCY	2 cut(s)	169, 689
MhlI	GDGCHC	2 cut(s)	472, 736
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	5 cut(s)	26, 85, 129, 448, 606
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	313
MnlI	CCTC	8 cut(s)	174, 324, 365, 417, 542, 633, 854, 963
Mox20I	TGGCCA	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	3 cut(s)	558, 585, 624
MslI	CAYNNNNRTG	5 cut(s)	107, 348, 773, 911, 929
Msp20I	TGGCCA	1 cut(s)	32
MspI	CCGG	4 cut(s)	782, 788, 885, 957
MspR9I	CCNGG	7 cut(s)	237, 300, 783, 789, 831, 957, 958
MvaI	CCWGG	3 cut(s)	237, 300, 831
MwoI	GCNNNNNNNGC	2 cut(s)	425, 530
NciI	CCSGG	4 cut(s)	783, 789, 957, 958
NcoI	CCATGG	2 cut(s)	684, 876
NdeII	GATC	2 cut(s)	169, 689
NheI	GCTAGC	1 cut(s)	262
NlaIV	GGNNCC	7 cut(s)	241, 312, 405, 735, 780, 786, 883
NmuCI	GTSAC	2 cut(s)	97, 456
NspI	RCATGY	3 cut(s)	401, 934, 970
OliI	CACNNNNGTG	1 cut(s)	348
PaeI	GCATGC	1 cut(s)	934
PfeI	GAWTC	2 cut(s)	149, 868
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	4 cut(s)	268, 297, 403, 654
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PpuMI	RGGWCCY	2 cut(s)	302, 374
PshBI	ATTAAT	2 cut(s)	585, 624
PsiI	TTATAA	1 cut(s)	981
Psp5II	RGGWCCY	2 cut(s)	302, 374
Psp6I	CCWGG	3 cut(s)	235, 298, 829
PspGI	CCWGG	3 cut(s)	235, 298, 829
PspN4I	GGNNCC	7 cut(s)	241, 312, 405, 735, 780, 786, 883
PspPI	GGNCC	7 cut(s)	302, 374, 706, 779, 785, 827, 994
PspPPI	RGGWCCY	2 cut(s)	302, 374
PstI	CTGCAG	1 cut(s)	297
PsuI	RGATCY	2 cut(s)	169, 689
RseI	CAYNNNNRTG	5 cut(s)	107, 348, 773, 911, 929
SaqAI	TTAA	3 cut(s)	558, 585, 624
SatI	GCNGC	4 cut(s)	267, 296, 402, 653
Sau3AI	GATC	2 cut(s)	169, 689
Sau96I	GGNCC	7 cut(s)	302, 374, 706, 779, 785, 827, 994
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	7 cut(s)	237, 300, 783, 789, 831, 957, 958
SduI	GDGCHC	2 cut(s)	472, 736
SfaNI	GCATC	1 cut(s)	607
SfcI	CTRYAG	1 cut(s)	293
SinI	GGWCC	5 cut(s)	302, 374, 779, 785, 827
SmaI	CCCGGG	1 cut(s)	958
SmiMI	CAYNNNNRTG	5 cut(s)	107, 348, 773, 911, 929
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
SphI	GCATGC	1 cut(s)	934
Sse9I	AATT	5 cut(s)	26, 85, 129, 448, 606
SsiI	CCGC	2 cut(s)	243, 401
SspMI	CTAG	7 cut(s)	95, 263, 473, 554, 675, 693, 714
StyD4I	CCNGG	7 cut(s)	235, 298, 781, 787, 829, 955, 956
StyI	CCWWGG	3 cut(s)	684, 876, 997
TaaI	ACNGT	3 cut(s)	210, 347, 435
TasI	AATT	5 cut(s)	26, 85, 129, 448, 606
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	2 cut(s)	149, 868
Tru1I	TTAA	3 cut(s)	558, 585, 624
Tru9I	TTAA	3 cut(s)	558, 585, 624
TscAI	CASTG	4 cut(s)	184, 199, 352, 546
TseFI	GTSAC	2 cut(s)	97, 456
TseI	GCWGC	3 cut(s)	266, 295, 652
Tsp45I	GTSAC	2 cut(s)	97, 456
TspDTI	ATGAA	4 cut(s)	442, 881, 917, 929
TspGWI	ACGGA	1 cut(s)	579
TspMI	CCCGGG	1 cut(s)	956
TspRI	CASTG	4 cut(s)	184, 199, 352, 546
Van91I	CCANNNNNTGG	1 cut(s)	212
VpaK11BI	GGWCC	5 cut(s)	302, 374, 779, 785, 827
VspI	ATTAAT	2 cut(s)	585, 624
XapI	RAATTY	2 cut(s)	85, 448
XceI	RCATGY	3 cut(s)	401, 934, 970
XmaI	CCCGGG	1 cut(s)	956
XspI	CTAG	7 cut(s)	95, 263, 473, 554, 675, 693, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.