Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011957

Physical Location & Seq

Genomic Coordinates Reverse (-)

44269005 .. 44269573

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00363170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGAAAGAAGAAGAAAAATGAGCAAGAAACCAAAGTAGTCGTTGCAGAATTCAAAGTCTCAATGCACTGCAATGCATGTGAAAGAATAGTTGCCAAAACCCTATTGAAAATCAAAGGGGTGGAGCAGTTTGCAACAGACATGAACAACCACAAGGTTGTGGTAACGGGGAAGATTGATCCAGAAAAGATTTTGAAGAAACTAAGGAAAAAGACGGGGAAGAAAGTAAAGATTATTGATGACAAGGAAGAAAAACCAAAAGACGCGTCTGATGAAGGAAATTGGGCAAGACCATTAATTGTTCATCCACTCATGTTTGATTGCTGCAAGGAAAGCGATCAGTTACTTATGATGTTTAGTGATGAGAATCCAAATGCTTGTTCCATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

130

Amino Acids

14.8

Weight (kDa)

9.06

Isoelectric Point (pI)

17.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	18 - 75	3.6e-14	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21490
fragaria_vesca	FvH4_3g29750 FvH4_4g16960 FvH4_4g16960 FvH4_4g16960 FvH4_4g16960
malus_domestica	MD16G1177100.v1.1
prunus_persica	Prupe.1G144000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0420551
rosa_laevigata	RLG00000007752
rosa_multiflora	Rmu_sc0002248.1_g000057
rosa_roxburghii	Rroxscaffold_5G00363170
rosa_rugosa	Rorug04G0164800 Rorug04G0164900 Rorug04G0165000
rosa_samantha	Rh4AG226400 Rh4CG241200 Rh4DG224700
rosa_wichuraiana	Rw4G019550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	266
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	50
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	3 cut(s)	55, 109, 196
AjuI	GAANNNNNNNTTGG	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	324
ApoI	RAATTY	1 cut(s)	50
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
AseI	ATTAAT	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	64
BisI	GCNGC	1 cut(s)	325
BlsI	GCNGC	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	79
Bse8I	GATNNNNATC	1 cut(s)	366
BseGI	GGATG	1 cut(s)	304
BseJI	GATNNNNATC	1 cut(s)	366
BseMI	GCAATG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	178, 337
BspFNI	CGCG	1 cut(s)	266
BspPI	GGATC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	79
BssMI	GATC	2 cut(s)	178, 337
BstDEI	CTNAG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	266
BstKTI	GATC	2 cut(s)	181, 340
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	2 cut(s)	178, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	81
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	67
CseI	GACGC	2 cut(s)	255, 272
CviAII	CATG	3 cut(s)	78, 142, 313
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	2 cut(s)	180, 339
DpnII	GATC	2 cut(s)	178, 337
EcoRI	GAATTC	1 cut(s)	50
EcoT22I	ATGCAT	1 cut(s)	79
FaeI	CATG	3 cut(s)	81, 145, 316
FaiI	YATR	5 cut(s)	79, 143, 314, 350, 386
FatI	CATG	3 cut(s)	77, 141, 312
Fnu4HI	GCNGC	1 cut(s)	325
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	325
GluI	GCNGC	1 cut(s)	325
HgaI	GACGC	2 cut(s)	255, 272
Hin1II	CATG	3 cut(s)	81, 145, 316
HinfI	GANTC	1 cut(s)	367
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	269
HpyCH4V	TGCA	6 cut(s)	47, 67, 72, 77, 134, 327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	333
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	81, 145, 316
Kzo9I	GATC	2 cut(s)	178, 337
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	1 cut(s)	195
Lsp1109I	GCAGC	1 cut(s)	311
MaeIII	GTNAC	2 cut(s)	163, 342
MalI	GATC	2 cut(s)	180, 339
MboI	GATC	2 cut(s)	178, 337
MboII	GAAGA	6 cut(s)	22, 25, 184, 208, 232, 260
MluCI	AATT	3 cut(s)	50, 280, 297
MluI	ACGCGT	1 cut(s)	264
Mph1103I	ATGCAT	1 cut(s)	79
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	333
NdeII	GATC	2 cut(s)	178, 337
NlaIII	CATG	3 cut(s)	81, 145, 316
NsiI	ATGCAT	1 cut(s)	79
NspI	RCATGY	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	1 cut(s)	326
PshBI	ATTAAT	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	1 cut(s)	325
Sau3AI	GATC	2 cut(s)	178, 337
SetI	ASST	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	72
Sse9I	AATT	3 cut(s)	50, 280, 297
TasI	AATT	3 cut(s)	50, 280, 297
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	1 cut(s)	74
TseI	GCWGC	1 cut(s)	324
TspDTI	ATGAA	3 cut(s)	158, 288, 293
TspRI	CASTG	1 cut(s)	74
VspI	ATTAAT	1 cut(s)	296
XapI	RAATTY	1 cut(s)	50
XceI	RCATGY	1 cut(s)	81
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.