Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011957

Physical Location & Seq

Genomic Coordinates Forward (+)

15069862 .. 15070259

Gene Structure 398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1177100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCACTGTAATGCATGCGAAAGAACCGTCGTCAAAACCCTCCGCAAACTCAAAGGGGTGGAGAAATTTACGACAGAAATGAAGAAACACAAAGTTGTGGTGACTGGGAAAATCGACCCACAAAAGGTGTTGAAGAAACTGAGGAAAAAGACGGGCAAGAAAGTGGAGATTGTGGTTGACAAGGAAGAAAAACCAAAAGATGCGTCCGGTGAGGGAAATCTGACAAAACCAAATGTTTATCCGCCATTTTTTGATTGCTGTAAAGAGAGTGAAATTCTTTTCATGTTCAGTGATGAGAACCCAAATGCTTGTTGCATAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

108

Amino Acids

12.2

Weight (kDa)

9.25

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	1 - 53	3.5e-12	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21490
fragaria_vesca	FvH4_3g29750 FvH4_4g16960 FvH4_4g16960 FvH4_4g16960 FvH4_4g16960
malus_domestica	MD16G1177100.v1.1
prunus_persica	Prupe.1G144000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0420551
rosa_laevigata	RLG00000007752
rosa_multiflora	Rmu_sc0002248.1_g000057
rosa_roxburghii	Rroxscaffold_5G00363170
rosa_rugosa	Rorug04G0164800 Rorug04G0164900 Rorug04G0165000
rosa_samantha	Rh4AG226400 Rh4CG241200 Rh4DG224700
rosa_wichuraiana	Rw4G019550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	43, 242
AcsI	RAATTY	2 cut(s)	65, 273
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	133
ApoI	RAATTY	2 cut(s)	65, 273
ArsI	GACNNNNNNTTYG	4 cut(s)	12, 44, 188, 220
AsuHPI	GGTGA	2 cut(s)	112, 221
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	124
BspACI	CCGC	2 cut(s)	43, 242
BspCNI	CTCAG	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	8, 28
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	4, 295
Cac8I	GCNNGC	1 cut(s)	16
CseI	GACGC	1 cut(s)	192
CviAII	CATG	2 cut(s)	15, 283
DdeI	CTNAG	1 cut(s)	140
EciI	GGCGGA	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	16
FaeI	CATG	2 cut(s)	18, 286
FaiI	YATR	3 cut(s)	16, 284, 317
FatI	CATG	2 cut(s)	14, 282
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	18, 286
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	2 cut(s)	112, 221
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	222
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	8, 28
HpyCH4V	TGCA	3 cut(s)	4, 14, 315
HpyF3I	CTNAG	1 cut(s)	140
Hsp92II	CATG	2 cut(s)	18, 286
LpnPI	CCDG	2 cut(s)	90, 220
LweI	GCATC	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	100
MboII	GAAGA	3 cut(s)	94, 145, 197
MluCI	AATT	2 cut(s)	65, 273
MnlI	CCTC	3 cut(s)	50, 135, 205
Mph1103I	ATGCAT	1 cut(s)	16
MslI	CAYNNNNRTG	1 cut(s)	9
MspI	CCGG	1 cut(s)	207
NlaIII	CATG	2 cut(s)	18, 286
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	18
PaeI	GCATGC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	9
SetI	ASST	1 cut(s)	129
SfaNI	GCATC	1 cut(s)	190
SgeI	CNNG	7 cut(s)	27, 117, 165, 169, 193, 219, 295
SmiMI	CAYNNNNRTG	1 cut(s)	9
SphI	GCATGC	1 cut(s)	18
Sse9I	AATT	2 cut(s)	65, 273
SsiI	CCGC	2 cut(s)	43, 242
TaaI	ACNGT	2 cut(s)	8, 28
TaqI	TCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	65, 273
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	95, 271
TspRI	CASTG	1 cut(s)	295
XapI	RAATTY	2 cut(s)	65, 273
XceI	RCATGY	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.